RNA–Protein interactions for RNA: ENST00000397030.5

MCF2L-208, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 2 BASIC

Gene MCF2L, Length 6,580 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-208ENST00000397030 DCAF8L2P0C7V8 631 aa31.1■■■□□ 2.57
MCF2L-208ENST00000397030 EHMT2Q96KQ7 1210 aa28.73■■■□□ 2.19
MCF2L-208ENST00000397030 SUPT5HO00267 1087 aaKnown RBP28.63■■■□□ 2.17
MCF2L-208ENST00000397030 SHROOM4Q9ULL8 1493 aa28.12■■■□□ 2.09
MCF2L-208ENST00000397030 APLP2Q06481 763 aa27.71■■■□□ 2.03
MCF2L-208ENST00000397030 FAM9AQ8IZU1 332 aaPredicted RBP27.71■■■□□ 2.03
MCF2L-208ENST00000397030 TTBK1Q5TCY1 1321 aaPredicted RBP27.63■■■□□ 2.01
MCF2L-208ENST00000397030 RANGAP1P46060 587 aaPredicted RBP27.49■■□□□ 1.99
MCF2L-208ENST00000397030 PELP1Q8IZL8 1130 aaKnown RBP27.38■■□□□ 1.97
MCF2L-208ENST00000397030 ATP1B4Q9UN42 357 aaPredicted RBP27.33■■□□□ 1.97
MCF2L-208ENST00000397030 NISCHQ9Y2I1 1504 aa26.85■■□□□ 1.89
MCF2L-208ENST00000397030 MYT1LQ9UL68 1186 aa26.72■■□□□ 1.87
MCF2L-208ENST00000397030 PCGF6Q9BYE7 350 aa26.68■■□□□ 1.86
MCF2L-208ENST00000397030 ERICH6Q7L0X2 663 aa26.67■■□□□ 1.86
MCF2L-208ENST00000397030 CHIC1Q5VXU3 224 aa26.5■■□□□ 1.83
MCF2L-208ENST00000397030 UBTFP17480 764 aaKnown RBP26.41■■□□□ 1.82
MCF2L-208ENST00000397030 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.31■■□□□ 1.8
MCF2L-208ENST00000397030 HNRNPUL2Q1KMD3 747 aaKnown RBP26.31■■□□□ 1.8
MCF2L-208ENST00000397030 TRIM41Q8WV44 630 aa26.28■■□□□ 1.8
MCF2L-208ENST00000397030 CCER1Q8TC90 406 aaPredicted RBP26.27■■□□□ 1.8
MCF2L-208ENST00000397030 POLR3GLQ9BT43 218 aa26.18■■□□□ 1.78
MCF2L-208ENST00000397030 YTHDC1Q96MU7 727 aaKnown RBP26.05■■□□□ 1.76
MCF2L-208ENST00000397030 PPARGC1BQ86YN6 1023 aaKnown RBP26.03■■□□□ 1.76
MCF2L-208ENST00000397030 CNGB1Q14028 1251 aaPredicted RBP26.01■■□□□ 1.75
MCF2L-208ENST00000397030 SLC4A1APQ9BWU0 796 aaKnown RBP26.01■■□□□ 1.75
MCF2L-208ENST00000397030 NEFLP07196 543 aa25.95■■□□□ 1.75
MCF2L-208ENST00000397030 CENPBP07199 599 aaPredicted RBP25.94■■□□□ 1.74
MCF2L-208ENST00000397030 ITGAEP38570 1179 aa25.94■■□□□ 1.74
MCF2L-208ENST00000397030 DAXXQ9UER7 740 aaPredicted RBP25.62■■□□□ 1.69
MCF2L-208ENST00000397030 MYT1Q01538 1121 aa25.59■■□□□ 1.69
MCF2L-208ENST00000397030 ZEB1P37275 1124 aaPredicted RBP25.56■■□□□ 1.68
MCF2L-208ENST00000397030 SLC24A1O60721 1099 aa25.32■■□□□ 1.64
MCF2L-208ENST00000397030 BCANQ96GW7 911 aa25.25■■□□□ 1.63
MCF2L-208ENST00000397030 FBLN2P98095 1184 aa25.22■■□□□ 1.63
MCF2L-208ENST00000397030 CLSPNQ9HAW4 1339 aa25.18■■□□□ 1.62
MCF2L-208ENST00000397030 PLPPR3Q6T4P5 718 aa25.15■■□□□ 1.62
MCF2L-208ENST00000397030 BCL11AQ9H165 835 aa25.14■■□□□ 1.61
MCF2L-208ENST00000397030 TRIM52Q96A61 297 aa25.08■■□□□ 1.61
MCF2L-208ENST00000397030 FAM50AQ14320 339 aaKnown RBP25.07■■□□□ 1.6
MCF2L-208ENST00000397030 PABPN1Q86U42 306 aaKnown RBP eCLIP25.02■■□□□ 1.61e-6■■■□□ 17.1
MCF2L-208ENST00000397030 ZNF316A6NFI3 1004 aaPredicted RBP24.99■■□□□ 1.59
MCF2L-208ENST00000397030 ZNF326Q5BKZ1 582 aaKnown RBP24.97■■□□□ 1.59
MCF2L-208ENST00000397030 ARID3CA6NKF2 412 aa24.84■■□□□ 1.57
MCF2L-208ENST00000397030 NEUROD1Q13562 356 aa24.82■■□□□ 1.56
MCF2L-208ENST00000397030 ZBTB47Q9UFB7 747 aaPredicted RBP24.8■■□□□ 1.56
MCF2L-208ENST00000397030 LOC105371045A0A1W2PR82 267 aa24.77■■□□□ 1.56
MCF2L-208ENST00000397030 TRIM26Q12899 539 aaPredicted RBP24.76■■□□□ 1.55
MCF2L-208ENST00000397030 ESF1Q9H501 851 aaKnown RBP24.68■■□□□ 1.54
MCF2L-208ENST00000397030 ABCC9O60706 1549 aa24.63■■□□□ 1.53
MCF2L-208ENST00000397030 CANXP27824 592 aaKnown RBP24.59■■□□□ 1.53
MCF2L-208ENST00000397030 NEFMP07197 916 aa24.54■■□□□ 1.52
MCF2L-208ENST00000397030 RTL5Q5HYW3 569 aaPredicted RBP24.53■■□□□ 1.52
MCF2L-208ENST00000397030 ZNF777Q9ULD5 760 aaPredicted RBP24.52■■□□□ 1.52
MCF2L-208ENST00000397030 STAG3Q9UJ98 1225 aa24.51■■□□□ 1.51
MCF2L-208ENST00000397030 P3H3Q8IVL6 736 aa24.49■■□□□ 1.51
MCF2L-208ENST00000397030 SCAF1Q9H7N4 1312 aaKnown RBP24.47■■□□□ 1.51
MCF2L-208ENST00000397030 HRCP23327 699 aa24.47■■□□□ 1.51
MCF2L-208ENST00000397030 A0A0G2JS52 829 aa24.46■■□□□ 1.51
MCF2L-208ENST00000397030 CHGAP10645 457 aaKnown RBP24.45■■□□□ 1.51
MCF2L-208ENST00000397030 PLEKHG5O94827 1062 aa24.35■■□□□ 1.49
MCF2L-208ENST00000397030 NPM1P06748 294 aaKnown RBP eCLIP24.23■■□□□ 1.47
MCF2L-208ENST00000397030 SENP3Q9H4L4 574 aaPredicted RBP24.23■■□□□ 1.47
MCF2L-208ENST00000397030 ANP32CO43423 234 aa24.2■■□□□ 1.46
MCF2L-208ENST00000397030 ZBTB7CA1YPR0 619 aa24.19■■□□□ 1.46
MCF2L-208ENST00000397030 DIEXFQ68CQ4 756 aaKnown RBP24.16■■□□□ 1.46
MCF2L-208ENST00000397030 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.01■■□□□ 1.437e-7■■□□□ 14.2
MCF2L-208ENST00000397030 C14orf37Q86TY3 774 aa23.97■■□□□ 1.43
MCF2L-208ENST00000397030 CDK11AQ9UQ88 783 aaPredicted RBP23.94■■□□□ 1.42
MCF2L-208ENST00000397030 NPM2Q86SE8 214 aaKnown RBP23.94■■□□□ 1.42
MCF2L-208ENST00000397030 SALL2Q9Y467 1007 aaPredicted RBP23.85■■□□□ 1.41
MCF2L-208ENST00000397030 HAP1P54257 671 aaPredicted RBP23.85■■□□□ 1.41
MCF2L-208ENST00000397030 HSP90AA1P07900 732 aaKnown RBP23.84■■□□□ 1.41
MCF2L-208ENST00000397030 ARID4BQ4LE39 1312 aaPredicted RBP23.77■■□□□ 1.4
MCF2L-208ENST00000397030 ARXQ96QS3 562 aa23.76■■□□□ 1.39
MCF2L-208ENST00000397030 TULP1O00294 542 aaPredicted RBP23.7■■□□□ 1.39
MCF2L-208ENST00000397030 CHIC2Q9UKJ5 165 aa23.7■■□□□ 1.38
MCF2L-208ENST00000397030 PPP1R15AO75807 674 aaPredicted RBP23.7■■□□□ 1.38
MCF2L-208ENST00000397030 KDM2AQ9Y2K7 1162 aa23.66■■□□□ 1.38
MCF2L-208ENST00000397030 KCNH8Q96L42 1107 aa23.61■■□□□ 1.37
MCF2L-208ENST00000397030 CDK11BP21127 795 aaKnown RBP23.6■■□□□ 1.37
MCF2L-208ENST00000397030 ANP32AP39687 249 aaKnown RBP23.6■■□□□ 1.37
MCF2L-208ENST00000397030 ANP32BQ92688 251 aaKnown RBP23.57■■□□□ 1.36
MCF2L-208ENST00000397030 FAM9BQ8IZU0 186 aa23.57■■□□□ 1.36
MCF2L-208ENST00000397030 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
MCF2L-208ENST00000397030 NPHP1O15259 732 aa23.53■■□□□ 1.36
MCF2L-208ENST00000397030 GTF3C3Q9Y5Q9 886 aa23.52■■□□□ 1.36
MCF2L-208ENST00000397030 LMOD2Q6P5Q4 547 aa23.51■■□□□ 1.35
MCF2L-208ENST00000397030 TRHP20396 242 aaPredicted RBP23.51■■□□□ 1.35
MCF2L-208ENST00000397030 UPF2Q9HAU5 1272 aaKnown RBP23.5■■□□□ 1.35
MCF2L-208ENST00000397030 TONSLQ96HA7 1378 aa23.49■■□□□ 1.35
MCF2L-208ENST00000397030 WDR43Q15061 677 aaKnown RBP eCLIP23.49■■□□□ 1.35
MCF2L-208ENST00000397030 CSRNP3Q8WYN3 585 aa23.42■■□□□ 1.34
MCF2L-208ENST00000397030 TSPY4P0CV99 314 aa23.41■■□□□ 1.34
MCF2L-208ENST00000397030 TSPY10P0CW01 314 aa23.41■■□□□ 1.34
MCF2L-208ENST00000397030 TMC1Q8TDI8 760 aa23.4■■□□□ 1.34
MCF2L-208ENST00000397030 TAOK2Q9UL54 1235 aa23.38■■□□□ 1.33
MCF2L-208ENST00000397030 MYH16Q9H6N6 1097 aa23.37■■□□□ 1.33
MCF2L-208ENST00000397030 PPM1GO15355 546 aaPredicted RBP23.36■■□□□ 1.33
MCF2L-208ENST00000397030 HNRNPUQ00839 825 aaKnown RBP eCLIP23.36■■□□□ 1.33
MCF2L-208ENST00000397030 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms