RNA–Protein interactions for RNA: ENST00000396352.8

HOXA3-202, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA3, Length 3,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-202ENST00000396352 NISCHQ9Y2I1 1504 aa32.41■■■□□ 2.78
HOXA3-202ENST00000396352 SHROOM4Q9ULL8 1493 aa27.61■■■□□ 2.01
HOXA3-202ENST00000396352 CCDC180Q9P1Z9 1646 aa27.57■■■□□ 2
HOXA3-202ENST00000396352 ZCCHC6Q5VYS8 1495 aaKnown RBP27.48■■□□□ 1.99
HOXA3-202ENST00000396352 SUPT5HO00267 1087 aaKnown RBP27.11■■□□□ 1.93
HOXA3-202ENST00000396352 DCAF1Q9Y4B6 1507 aa26.64■■□□□ 1.86
HOXA3-202ENST00000396352 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
HOXA3-202ENST00000396352 MYO15BQ96JP2 1530 aa26.57■■□□□ 1.84
HOXA3-202ENST00000396352 CHIC1Q5VXU3 224 aa26.52■■□□□ 1.84
HOXA3-202ENST00000396352 ABCC9O60706 1549 aa26■■□□□ 1.75
HOXA3-202ENST00000396352 HRCP23327 699 aa25.99■■□□□ 1.75
HOXA3-202ENST00000396352 PCGF6Q9BYE7 350 aa25.8■■□□□ 1.72
HOXA3-202ENST00000396352 SCRIBQ14160 1630 aa25.78■■□□□ 1.72
HOXA3-202ENST00000396352 LOC105371045A0A1W2PR82 267 aa25.7■■□□□ 1.7
HOXA3-202ENST00000396352 RSF1Q96T23 1441 aaPredicted RBP25.69■■□□□ 1.7
HOXA3-202ENST00000396352 RB1CC1Q8TDY2 1594 aa25.5■■□□□ 1.67
HOXA3-202ENST00000396352 PPARGC1BQ86YN6 1023 aaKnown RBP25.39■■□□□ 1.66
HOXA3-202ENST00000396352 NACADO15069 1562 aa25.38■■□□□ 1.65
HOXA3-202ENST00000396352 TRIM26Q12899 539 aaPredicted RBP25.32■■□□□ 1.64
HOXA3-202ENST00000396352 TRIM41Q8WV44 630 aa25.26■■□□□ 1.63
HOXA3-202ENST00000396352 CECR2Q9BXF3 1484 aa25.24■■□□□ 1.63
HOXA3-202ENST00000396352 MROH2BQ7Z745 1585 aa25.2■■□□□ 1.63
HOXA3-202ENST00000396352 WIZO95785 1651 aa25.11■■□□□ 1.61
HOXA3-202ENST00000396352 FAM9AQ8IZU1 332 aaPredicted RBP25.02■■□□□ 1.6
HOXA3-202ENST00000396352 BAZ1AQ9NRL2 1556 aaPredicted RBP24.99■■□□□ 1.59
HOXA3-202ENST00000396352 EIF4G1Q04637 1599 aaKnown RBP24.94■■□□□ 1.58
HOXA3-202ENST00000396352 ZEB1P37275 1124 aaPredicted RBP24.82■■□□□ 1.56
HOXA3-202ENST00000396352 EHMT2Q96KQ7 1210 aa24.76■■□□□ 1.55
HOXA3-202ENST00000396352 TOP2AP11388 1531 aaKnown RBP24.71■■□□□ 1.55
HOXA3-202ENST00000396352 SMARCA4P51532 1647 aa24.68■■□□□ 1.54
HOXA3-202ENST00000396352 UNC13AQ9UPW8 1703 aa24.68■■□□□ 1.54
HOXA3-202ENST00000396352 SMARCA2P51531 1590 aa24.59■■□□□ 1.53
HOXA3-202ENST00000396352 ABCC8Q09428 1581 aa24.57■■□□□ 1.52
HOXA3-202ENST00000396352 CCDC88BA6NC98 1476 aa24.57■■□□□ 1.52
HOXA3-202ENST00000396352 WRNQ14191 1432 aaPredicted RBP eCLIP24.38■■□□□ 1.49
HOXA3-202ENST00000396352 SOGA1O94964 1423 aa24.33■■□□□ 1.49
HOXA3-202ENST00000396352 CEP162Q5TB80 1403 aa24.31■■□□□ 1.48
HOXA3-202ENST00000396352 BICRAQ9NZM4 1560 aa24.29■■□□□ 1.48
HOXA3-202ENST00000396352 EEA1Q15075 1411 aa24.26■■□□□ 1.47
HOXA3-202ENST00000396352 TNIKQ9UKE5 1360 aa24.26■■□□□ 1.47
HOXA3-202ENST00000396352 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.25■■□□□ 1.47
HOXA3-202ENST00000396352 PEG3Q9GZU2 1588 aa24.24■■□□□ 1.47
HOXA3-202ENST00000396352 RUSC2Q8N2Y8 1516 aa24.22■■□□□ 1.47
HOXA3-202ENST00000396352 CCER1Q8TC90 406 aaPredicted RBP24.17■■□□□ 1.46
HOXA3-202ENST00000396352 CSRNP3Q8WYN3 585 aa24.15■■□□□ 1.46
HOXA3-202ENST00000396352 GOLGA3Q08378 1498 aa24.1■■□□□ 1.45
HOXA3-202ENST00000396352 PABPN1Q86U42 306 aaKnown RBP eCLIP24.1■■□□□ 1.45
HOXA3-202ENST00000396352 SYNJ1O43426 1573 aa24.06■■□□□ 1.44
HOXA3-202ENST00000396352 SCAF1Q9H7N4 1312 aaKnown RBP24.05■■□□□ 1.44
HOXA3-202ENST00000396352 TTBK1Q5TCY1 1321 aaPredicted RBP24.03■■□□□ 1.44
HOXA3-202ENST00000396352 UBTFP17480 764 aaKnown RBP24.01■■□□□ 1.43
HOXA3-202ENST00000396352 KIF21BO75037 1637 aa24■■□□□ 1.43
HOXA3-202ENST00000396352 ATAD2BQ9ULI0 1458 aa23.95■■□□□ 1.43
HOXA3-202ENST00000396352 CEP164Q9UPV0 1460 aa23.95■■□□□ 1.42
HOXA3-202ENST00000396352 BAZ1BQ9UIG0 1483 aaKnown RBP23.88■■□□□ 1.41
HOXA3-202ENST00000396352 DIEXFQ68CQ4 756 aaKnown RBP23.82■■□□□ 1.4
HOXA3-202ENST00000396352 CLIP1P30622 1438 aa23.8■■□□□ 1.4
HOXA3-202ENST00000396352 RAPGEF2Q9Y4G8 1499 aa23.76■■□□□ 1.39
HOXA3-202ENST00000396352 VPS8Q8N3P4 1428 aa23.75■■□□□ 1.39
HOXA3-202ENST00000396352 TOP2BQ02880 1626 aa23.75■■□□□ 1.39
HOXA3-202ENST00000396352 ACIN1Q9UKV3 1341 aaKnown RBP23.75■■□□□ 1.39
HOXA3-202ENST00000396352 NEUROD1Q13562 356 aa23.71■■□□□ 1.39
HOXA3-202ENST00000396352 BIVM-ERCC5R4GMW8 1640 aa23.7■■□□□ 1.38
HOXA3-202ENST00000396352 PELP1Q8IZL8 1130 aaKnown RBP23.69■■□□□ 1.38
HOXA3-202ENST00000396352 ZNF316A6NFI3 1004 aaPredicted RBP23.62■■□□□ 1.37
HOXA3-202ENST00000396352 HNRNPUL2Q1KMD3 747 aaKnown RBP23.58■■□□□ 1.37
HOXA3-202ENST00000396352 ERICH3Q5RHP9 1530 aa23.57■■□□□ 1.36
HOXA3-202ENST00000396352 CENPBP07199 599 aaPredicted RBP23.54■■□□□ 1.36
HOXA3-202ENST00000396352 PRXQ9BXM0 1461 aa23.53■■□□□ 1.36
HOXA3-202ENST00000396352 HMGXB3Q12766 1538 aa23.52■■□□□ 1.36
HOXA3-202ENST00000396352 APLP2Q06481 763 aa23.48■■□□□ 1.35
HOXA3-202ENST00000396352 ARAP1Q96P48 1450 aa23.47■■□□□ 1.35
HOXA3-202ENST00000396352 CUX1P39880 1505 aa23.46■■□□□ 1.35
HOXA3-202ENST00000396352 NCAPD3P42695 1498 aa23.46■■□□□ 1.35
HOXA3-202ENST00000396352 GTF3C3Q9Y5Q9 886 aa23.46■■□□□ 1.35
HOXA3-202ENST00000396352 RANGAP1P46060 587 aaPredicted RBP23.44■■□□□ 1.34
HOXA3-202ENST00000396352 CFTRP13569 1480 aa23.33■■□□□ 1.33
HOXA3-202ENST00000396352 KIF27Q86VH2 1401 aa23.32■■□□□ 1.32
HOXA3-202ENST00000396352 MIER1Q8N108 512 aa23.3■■□□□ 1.32
HOXA3-202ENST00000396352 PRDM2Q13029 1718 aa23.29■■□□□ 1.32
HOXA3-202ENST00000396352 KANK4Q5T7N3 995 aaPredicted RBP23.27■■□□□ 1.32
HOXA3-202ENST00000396352 DHX57Q6P158 1386 aaKnown RBP23.27■■□□□ 1.32
HOXA3-202ENST00000396352 CLSPNQ9HAW4 1339 aa23.26■■□□□ 1.31
HOXA3-202ENST00000396352 RRBP1Q9P2E9 1410 aaKnown RBP23.25■■□□□ 1.31
HOXA3-202ENST00000396352 ARHGAP35Q9NRY4 1499 aa23.22■■□□□ 1.31
HOXA3-202ENST00000396352 YTHDC1Q96MU7 727 aaKnown RBP23.21■■□□□ 1.31
HOXA3-202ENST00000396352 CUX2O14529 1486 aa23.17■■□□□ 1.3
HOXA3-202ENST00000396352 CCNB3Q8WWL7 1395 aa23.08■■□□□ 1.29
HOXA3-202ENST00000396352 IGF1RP08069 1367 aa23.06■■□□□ 1.28
HOXA3-202ENST00000396352 TIAM1Q13009 1591 aa23.03■■□□□ 1.28
HOXA3-202ENST00000396352 MAP3K1Q13233 1512 aa23.02■■□□□ 1.28
HOXA3-202ENST00000396352 CADPSQ9ULU8 1353 aa22.98■■□□□ 1.27
HOXA3-202ENST00000396352 FGD5Q6ZNL6 1462 aa22.98■■□□□ 1.27
HOXA3-202ENST00000396352 CARMIL1Q5VZK9 1371 aa22.94■■□□□ 1.26
HOXA3-202ENST00000396352 MAPKBP1O60336 1514 aa22.92■■□□□ 1.26
HOXA3-202ENST00000396352 LRRC9Q6ZRR7 1453 aa22.9■■□□□ 1.26
HOXA3-202ENST00000396352 CFAP43Q8NDM7 1665 aa22.9■■□□□ 1.26
HOXA3-202ENST00000396352 RAB3GAP2Q9H2M9 1393 aa22.89■■□□□ 1.26
HOXA3-202ENST00000396352 ITGAEP38570 1179 aa22.87■■□□□ 1.25
HOXA3-202ENST00000396352 PCF11O94913 1555 aaKnown RBP22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms