RNA–Protein interactions for RNA: ENST00000395577.2

CDKN3-203, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 5 BASIC

Gene CDKN3, Length 637 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-203ENST00000395577 CHIC1Q5VXU3 224 aa23.36■■□□□ 1.33
CDKN3-203ENST00000395577 AEBP2Q6ZN18 517 aaPredicted RBP23.33■■□□□ 1.33
CDKN3-203ENST00000395577 PHF23Q9BUL5 403 aaPredicted RBP20.61■□□□□ 0.89
CDKN3-203ENST00000395577 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
CDKN3-203ENST00000395577 PLPPR3Q6T4P5 718 aa19.24■□□□□ 0.67
CDKN3-203ENST00000395577 FOXD1Q16676 465 aa18.22■□□□□ 0.51
CDKN3-203ENST00000395577 ADRA2BP18089 450 aa18.03■□□□□ 0.48
CDKN3-203ENST00000395577 PPP6R1Q9UPN7 881 aa18■□□□□ 0.47
CDKN3-203ENST00000395577 PIAS4Q8N2W9 510 aaPredicted RBP17.34■□□□□ 0.37
CDKN3-203ENST00000395577 KCNA4P22459 653 aa17.32■□□□□ 0.36
CDKN3-203ENST00000395577 PPP4R3CPQ6ZMV5 832 aa17.05■□□□□ 0.32
CDKN3-203ENST00000395577 EHMT2Q96KQ7 1210 aa16.83■□□□□ 0.28
CDKN3-203ENST00000395577 NCBP3Q53F19 620 aaKnown RBP16.77■□□□□ 0.28
CDKN3-203ENST00000395577 SLC4A1APQ9BWU0 796 aaKnown RBP16.61■□□□□ 0.25
CDKN3-203ENST00000395577 MSH5O43196 834 aa16.56■□□□□ 0.24
CDKN3-203ENST00000395577 NPM3O75607 178 aaKnown RBP16.52■□□□□ 0.24
CDKN3-203ENST00000395577 SCAF1Q9H7N4 1312 aaKnown RBP16.48■□□□□ 0.23
CDKN3-203ENST00000395577 CNKSR2Q8WXI2 1034 aa16.42■□□□□ 0.22
CDKN3-203ENST00000395577 CSRNP3Q8WYN3 585 aa16.34■□□□□ 0.21
CDKN3-203ENST00000395577 MAPK8IP2Q13387 824 aaPredicted RBP16.18■□□□□ 0.18
CDKN3-203ENST00000395577 RNF216Q9NWF9 866 aaPredicted RBP15.95■□□□□ 0.14
CDKN3-203ENST00000395577 ZBTB22O15209 634 aa15.94■□□□□ 0.14
CDKN3-203ENST00000395577 DNAJC5BQ9UF47 199 aa15.9■□□□□ 0.14
CDKN3-203ENST00000395577 DMRT2Q9Y5R5 561 aa15.82■□□□□ 0.12
CDKN3-203ENST00000395577 FOXD4L1Q9NU39 408 aa15.77■□□□□ 0.12
CDKN3-203ENST00000395577 HOXD11P31277 338 aaPredicted RBP15.72■□□□□ 0.11
CDKN3-203ENST00000395577 SLC4A2P04920 1241 aa15.44■□□□□ 0.06
CDKN3-203ENST00000395577 MYCNP04198 464 aaPredicted RBP15.25■□□□□ 0.03
CDKN3-203ENST00000395577 DCAF8L1A6NGE4 600 aa15.15■□□□□ 0.02
CDKN3-203ENST00000395577 ATXN8OSP0DMR3 200 aa15.15■□□□□ 0.02
CDKN3-203ENST00000395577 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.02■□□□□ -0
CDKN3-203ENST00000395577 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.83□□□□□ -0.04
CDKN3-203ENST00000395577 HNRNPUL2Q1KMD3 747 aaKnown RBP14.83□□□□□ -0.04
CDKN3-203ENST00000395577 SAMD1Q6SPF0 538 aaPredicted RBP14.81□□□□□ -0.04
CDKN3-203ENST00000395577 U3KPZ7 1027 aaPredicted RBP14.81□□□□□ -0.04
CDKN3-203ENST00000395577 ATF5Q9Y2D1 282 aaPredicted RBP14.8□□□□□ -0.04
CDKN3-203ENST00000395577 FKBP8Q14318 412 aa14.76□□□□□ -0.05
CDKN3-203ENST00000395577 APLP2Q06481 763 aa14.54□□□□□ -0.08
CDKN3-203ENST00000395577 ZNF219Q9P2Y4 722 aaPredicted RBP14.5□□□□□ -0.09
CDKN3-203ENST00000395577 AMER1Q5JTC6 1135 aaPredicted RBP14.48□□□□□ -0.09
CDKN3-203ENST00000395577 RTN4Q9NQC3 1192 aaKnown RBP14.47□□□□□ -0.09
CDKN3-203ENST00000395577 TRHP20396 242 aaPredicted RBP14.25□□□□□ -0.13
CDKN3-203ENST00000395577 RNF39Q9H2S5 420 aa14.24□□□□□ -0.13
CDKN3-203ENST00000395577 SPINK5Q9NQ38 1064 aaPredicted RBP14.24□□□□□ -0.13
CDKN3-203ENST00000395577 MKRN4PQ13434 485 aaPredicted RBP14.18□□□□□ -0.14
CDKN3-203ENST00000395577 SPDYE4A6NLX3 237 aa14.16□□□□□ -0.14
CDKN3-203ENST00000395577 CAPN15O75808 1086 aa14.16□□□□□ -0.14
CDKN3-203ENST00000395577 FBLN2P98095 1184 aa14.15□□□□□ -0.14
CDKN3-203ENST00000395577 POLA2Q14181 598 aa14.14□□□□□ -0.15
CDKN3-203ENST00000395577 C1QBPQ07021 282 aaKnown RBP14.11□□□□□ -0.15
CDKN3-203ENST00000395577 FBXO3Q9UK99 471 aa14.06□□□□□ -0.16
CDKN3-203ENST00000395577 SLC24A1O60721 1099 aa14.04□□□□□ -0.16
CDKN3-203ENST00000395577 POTEDQ86YR6 584 aa14.04□□□□□ -0.16
CDKN3-203ENST00000395577 PROM2Q8N271 834 aa13.98□□□□□ -0.17
CDKN3-203ENST00000395577 ABCB7O75027 752 aa13.95□□□□□ -0.18
CDKN3-203ENST00000395577 ZBTB12Q9Y330 459 aaPredicted RBP13.94□□□□□ -0.18
CDKN3-203ENST00000395577 VASPP50552 380 aaPredicted RBP13.85□□□□□ -0.19
CDKN3-203ENST00000395577 DSG3P32926 999 aa13.77□□□□□ -0.21
CDKN3-203ENST00000395577 IFNLR1Q8IU57 520 aaPredicted RBP13.7□□□□□ -0.22
CDKN3-203ENST00000395577 ZNF692Q9BU19 519 aaPredicted RBP13.66□□□□□ -0.22
CDKN3-203ENST00000395577 OSCARQ8IYS5 282 aa13.63□□□□□ -0.23
CDKN3-203ENST00000395577 SPDYE2BA6NHP3 402 aa13.61□□□□□ -0.23
CDKN3-203ENST00000395577 SPDYE6P0CI01 402 aa13.61□□□□□ -0.23
CDKN3-203ENST00000395577 SPDYE2Q495Y8 402 aa13.61□□□□□ -0.23
CDKN3-203ENST00000395577 SSUH2Q9Y2M2 353 aa13.56□□□□□ -0.24
CDKN3-203ENST00000395577 STAG3Q9UJ98 1225 aa13.52□□□□□ -0.25
CDKN3-203ENST00000395577 PABPN1Q86U42 306 aaKnown RBP eCLIP13.51□□□□□ -0.25
CDKN3-203ENST00000395577 KLHL34Q8N239 644 aa13.5□□□□□ -0.25
CDKN3-203ENST00000395577 CACNB1Q02641 598 aaPredicted RBP13.47□□□□□ -0.25
CDKN3-203ENST00000395577 PKD2Q13563 968 aa13.47□□□□□ -0.25
CDKN3-203ENST00000395577 DCAF8L2P0C7V8 631 aa13.46□□□□□ -0.25
CDKN3-203ENST00000395577 SPOCK2Q92563 424 aa13.45□□□□□ -0.26
CDKN3-203ENST00000395577 PLCD3Q8N3E9 789 aa13.44□□□□□ -0.26
CDKN3-203ENST00000395577 PLCB2Q00722 1185 aa13.38□□□□□ -0.27
CDKN3-203ENST00000395577 MIER1Q8N108 512 aa13.38□□□□□ -0.27
CDKN3-203ENST00000395577 ECM2O94769 699 aaPredicted RBP13.31□□□□□ -0.28
CDKN3-203ENST00000395577 PLEKHG5O94827 1062 aa13.27□□□□□ -0.29
CDKN3-203ENST00000395577 ZBTB47Q9UFB7 747 aaPredicted RBP13.22□□□□□ -0.29
CDKN3-203ENST00000395577 HAP1P54257 671 aaPredicted RBP13.21□□□□□ -0.29
CDKN3-203ENST00000395577 CIZ1Q9ULV3 898 aaPredicted RBP13.16□□□□□ -0.3
CDKN3-203ENST00000395577 RGL2O15211 777 aa13.15□□□□□ -0.3
CDKN3-203ENST00000395577 BBXQ8WY36 941 aaPredicted RBP13.13□□□□□ -0.31
CDKN3-203ENST00000395577 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.12□□□□□ -0.31
CDKN3-203ENST00000395577 NPM1P06748 294 aaKnown RBP eCLIP13.1□□□□□ -0.31
CDKN3-203ENST00000395577 RBM42Q9BTD8 480 aaKnown RBP13.1□□□□□ -0.31
CDKN3-203ENST00000395577 SPDYE1Q8NFV5 336 aaPredicted RBP13.08□□□□□ -0.32
CDKN3-203ENST00000395577 AKT1S1Q96B36 256 aa13.07□□□□□ -0.32
CDKN3-203ENST00000395577 TRIM41Q8WV44 630 aa13.03□□□□□ -0.32
CDKN3-203ENST00000395577 PAXIP1Q6ZW49 1069 aaPredicted RBP13.02□□□□□ -0.33
CDKN3-203ENST00000395577 CLEC11AQ9Y240 323 aa13.01□□□□□ -0.33
CDKN3-203ENST00000395577 VSIG10Q8N0Z9 540 aa13□□□□□ -0.33
CDKN3-203ENST00000395577 CFAP44Q96MT7 982 aa13□□□□□ -0.33
CDKN3-203ENST00000395577 GSE1Q14687 1217 aa12.99□□□□□ -0.33
CDKN3-203ENST00000395577 PRR29P0C7W0 189 aa12.96□□□□□ -0.33
CDKN3-203ENST00000395577 CHGAP10645 457 aaKnown RBP12.96□□□□□ -0.33
CDKN3-203ENST00000395577 NUBP1P53384 320 aa12.96□□□□□ -0.33
CDKN3-203ENST00000395577 REM2Q8IYK8 340 aaPredicted RBP12.95□□□□□ -0.34
CDKN3-203ENST00000395577 CREBZFQ9NS37 354 aa12.93□□□□□ -0.34
CDKN3-203ENST00000395577 DCAF8Q5TAQ9 597 aa12.92□□□□□ -0.34
CDKN3-203ENST00000395577 SPRYD3Q8NCJ5 442 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms