RNA–Protein interactions for RNA: ENST00000393408.7

CBX1-202, Transcript of chromobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX1, Length 2,422 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX1-202ENST00000393408 NISCHQ9Y2I1 1504 aa38.95■■■■□ 3.83
CBX1-202ENST00000393408 CCDC180Q9P1Z9 1646 aa33.14■■■□□ 2.9
CBX1-202ENST00000393408 SHROOM4Q9ULL8 1493 aa33.11■■■□□ 2.89
CBX1-202ENST00000393408 ZCCHC6Q5VYS8 1495 aaKnown RBP32.99■■■□□ 2.87
CBX1-202ENST00000393408 SUPT5HO00267 1087 aaKnown RBP32.53■■■□□ 2.8
CBX1-202ENST00000393408 DCAF1Q9Y4B6 1507 aa32.03■■■□□ 2.72
CBX1-202ENST00000393408 DCAF8L2P0C7V8 631 aa31.99■■■□□ 2.71
CBX1-202ENST00000393408 CHIC1Q5VXU3 224 aa31.79■■■□□ 2.68
CBX1-202ENST00000393408 MYO15BQ96JP2 1530 aa31.74■■■□□ 2.67
CBX1-202ENST00000393408 ABCC9O60706 1549 aa31.18■■■□□ 2.58
CBX1-202ENST00000393408 HRCP23327 699 aa31.06■■■□□ 2.56
CBX1-202ENST00000393408 SCRIBQ14160 1630 aa30.96■■■□□ 2.55
CBX1-202ENST00000393408 PCGF6Q9BYE7 350 aa30.87■■■□□ 2.53
CBX1-202ENST00000393408 RSF1Q96T23 1441 aaPredicted RBP30.84■■■□□ 2.53
CBX1-202ENST00000393408 LOC105371045A0A1W2PR82 267 aa30.78■■■□□ 2.52
CBX1-202ENST00000393408 RB1CC1Q8TDY2 1594 aa30.57■■■□□ 2.48
CBX1-202ENST00000393408 NACADO15069 1562 aa30.56■■■□□ 2.48
CBX1-202ENST00000393408 TRIM26Q12899 539 aaPredicted RBP30.34■■■□□ 2.45
CBX1-202ENST00000393408 TRIM41Q8WV44 630 aa30.34■■■□□ 2.45
CBX1-202ENST00000393408 CECR2Q9BXF3 1484 aa30.31■■■□□ 2.44
CBX1-202ENST00000393408 PPARGC1BQ86YN6 1023 aaKnown RBP30.3■■■□□ 2.44
CBX1-202ENST00000393408 MROH2BQ7Z745 1585 aa30.26■■■□□ 2.43
CBX1-202ENST00000393408 WIZO95785 1651 aa30.12■■■□□ 2.41
CBX1-202ENST00000393408 FAM9AQ8IZU1 332 aaPredicted RBP30.02■■■□□ 2.4
CBX1-202ENST00000393408 BAZ1AQ9NRL2 1556 aaPredicted RBP29.99■■■□□ 2.39
CBX1-202ENST00000393408 EIF4G1Q04637 1599 aaKnown RBP29.86■■■□□ 2.37
CBX1-202ENST00000393408 ZEB1P37275 1124 aaPredicted RBP29.76■■■□□ 2.35
CBX1-202ENST00000393408 EHMT2Q96KQ7 1210 aa29.69■■■□□ 2.34
CBX1-202ENST00000393408 TOP2AP11388 1531 aaKnown RBP29.68■■■□□ 2.34
CBX1-202ENST00000393408 SMARCA4P51532 1647 aa29.65■■■□□ 2.34
CBX1-202ENST00000393408 UNC13AQ9UPW8 1703 aa29.63■■■□□ 2.33
CBX1-202ENST00000393408 SMARCA2P51531 1590 aa29.52■■■□□ 2.32
CBX1-202ENST00000393408 CCDC88BA6NC98 1476 aa29.51■■■□□ 2.31
CBX1-202ENST00000393408 ABCC8Q09428 1581 aa29.46■■■□□ 2.31
CBX1-202ENST00000393408 WRNQ14191 1432 aaPredicted RBP eCLIP29.22■■■□□ 2.27
CBX1-202ENST00000393408 BICRAQ9NZM4 1560 aa29.21■■■□□ 2.27
CBX1-202ENST00000393408 SOGA1O94964 1423 aa29.19■■■□□ 2.26
CBX1-202ENST00000393408 EEA1Q15075 1411 aa29.15■■■□□ 2.26
CBX1-202ENST00000393408 CEP162Q5TB80 1403 aa29.14■■■□□ 2.26
CBX1-202ENST00000393408 PEG3Q9GZU2 1588 aa29.12■■■□□ 2.25
CBX1-202ENST00000393408 TNIKQ9UKE5 1360 aa29.12■■■□□ 2.25
CBX1-202ENST00000393408 RUSC2Q8N2Y8 1516 aa29.04■■■□□ 2.24
CBX1-202ENST00000393408 PABPN1Q86U42 306 aaKnown RBP eCLIP29.03■■■□□ 2.24
CBX1-202ENST00000393408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.02■■■□□ 2.24
CBX1-202ENST00000393408 CSRNP3Q8WYN3 585 aa29.02■■■□□ 2.24
CBX1-202ENST00000393408 CCER1Q8TC90 406 aaPredicted RBP28.97■■■□□ 2.23
CBX1-202ENST00000393408 GOLGA3Q08378 1498 aa28.93■■■□□ 2.22
CBX1-202ENST00000393408 UBTFP17480 764 aaKnown RBP28.86■■■□□ 2.21
CBX1-202ENST00000393408 SYNJ1O43426 1573 aa28.84■■■□□ 2.21
CBX1-202ENST00000393408 ATAD2BQ9ULI0 1458 aa28.81■■■□□ 2.2
CBX1-202ENST00000393408 TTBK1Q5TCY1 1321 aaPredicted RBP28.8■■■□□ 2.2
CBX1-202ENST00000393408 KIF21BO75037 1637 aa28.78■■■□□ 2.2
CBX1-202ENST00000393408 CEP164Q9UPV0 1460 aa28.75■■■□□ 2.19
CBX1-202ENST00000393408 BAZ1BQ9UIG0 1483 aaKnown RBP28.73■■■□□ 2.19
CBX1-202ENST00000393408 SCAF1Q9H7N4 1312 aaKnown RBP28.66■■■□□ 2.18
CBX1-202ENST00000393408 CLIP1P30622 1438 aa28.57■■■□□ 2.16
CBX1-202ENST00000393408 TOP2BQ02880 1626 aa28.51■■■□□ 2.15
CBX1-202ENST00000393408 DIEXFQ68CQ4 756 aaKnown RBP28.5■■■□□ 2.15
CBX1-202ENST00000393408 VPS8Q8N3P4 1428 aa28.49■■■□□ 2.15
CBX1-202ENST00000393408 RAPGEF2Q9Y4G8 1499 aa28.49■■■□□ 2.15
CBX1-202ENST00000393408 BIVM-ERCC5R4GMW8 1640 aa28.44■■■□□ 2.14
CBX1-202ENST00000393408 ACIN1Q9UKV3 1341 aaKnown RBP28.38■■■□□ 2.13
CBX1-202ENST00000393408 NEUROD1Q13562 356 aa28.3■■■□□ 2.12
CBX1-202ENST00000393408 HMGXB3Q12766 1538 aa28.3■■■□□ 2.12
CBX1-202ENST00000393408 ERICH3Q5RHP9 1530 aa28.29■■■□□ 2.12
CBX1-202ENST00000393408 ZNF316A6NFI3 1004 aaPredicted RBP28.29■■■□□ 2.12
CBX1-202ENST00000393408 HNRNPUL2Q1KMD3 747 aaKnown RBP28.29■■■□□ 2.12
CBX1-202ENST00000393408 PELP1Q8IZL8 1130 aaKnown RBP28.27■■■□□ 2.12
CBX1-202ENST00000393408 APLP2Q06481 763 aa28.26■■■□□ 2.11
CBX1-202ENST00000393408 NCAPD3P42695 1498 aa28.25■■■□□ 2.11
CBX1-202ENST00000393408 PRXQ9BXM0 1461 aa28.25■■■□□ 2.11
CBX1-202ENST00000393408 CENPBP07199 599 aaPredicted RBP28.19■■■□□ 2.1
CBX1-202ENST00000393408 CUX1P39880 1505 aa28.17■■■□□ 2.1
CBX1-202ENST00000393408 RANGAP1P46060 587 aaPredicted RBP28.16■■■□□ 2.1
CBX1-202ENST00000393408 ARAP1Q96P48 1450 aa28.13■■■□□ 2.09
CBX1-202ENST00000393408 CFTRP13569 1480 aa28.06■■■□□ 2.08
CBX1-202ENST00000393408 KIF27Q86VH2 1401 aa28.05■■■□□ 2.08
CBX1-202ENST00000393408 GTF3C3Q9Y5Q9 886 aa28.01■■■□□ 2.07
CBX1-202ENST00000393408 PRDM2Q13029 1718 aa27.95■■■□□ 2.07
CBX1-202ENST00000393408 KANK4Q5T7N3 995 aaPredicted RBP27.91■■■□□ 2.06
CBX1-202ENST00000393408 CLSPNQ9HAW4 1339 aa27.91■■■□□ 2.06
CBX1-202ENST00000393408 RRBP1Q9P2E9 1410 aaKnown RBP27.87■■■□□ 2.05
CBX1-202ENST00000393408 DHX57Q6P158 1386 aaKnown RBP27.87■■■□□ 2.05
CBX1-202ENST00000393408 MIER1Q8N108 512 aa27.87■■■□□ 2.05
CBX1-202ENST00000393408 ARHGAP35Q9NRY4 1499 aa27.86■■■□□ 2.05
CBX1-202ENST00000393408 CUX2O14529 1486 aa27.76■■■□□ 2.03
CBX1-202ENST00000393408 YTHDC1Q96MU7 727 aaKnown RBP27.75■■■□□ 2.03
CBX1-202ENST00000393408 IGF1RP08069 1367 aa27.72■■■□□ 2.03
CBX1-202ENST00000393408 CCNB3Q8WWL7 1395 aa27.7■■■□□ 2.02
CBX1-202ENST00000393408 CADPSQ9ULU8 1353 aa27.68■■■□□ 2.02
CBX1-202ENST00000393408 MAP3K1Q13233 1512 aa27.63■■■□□ 2.01
CBX1-202ENST00000393408 FGD5Q6ZNL6 1462 aa27.63■■■□□ 2.01
CBX1-202ENST00000393408 TIAM1Q13009 1591 aa27.61■■■□□ 2.01
CBX1-202ENST00000393408 CARMIL1Q5VZK9 1371 aa27.59■■■□□ 2.01
CBX1-202ENST00000393408 LRRC9Q6ZRR7 1453 aa27.48■■□□□ 1.99
CBX1-202ENST00000393408 ITGAEP38570 1179 aa27.45■■□□□ 1.98
CBX1-202ENST00000393408 RAB3GAP2Q9H2M9 1393 aa27.45■■□□□ 1.98
CBX1-202ENST00000393408 CFAP43Q8NDM7 1665 aa27.45■■□□□ 1.98
CBX1-202ENST00000393408 CC2D2AQ9P2K1 1620 aa27.44■■□□□ 1.98
CBX1-202ENST00000393408 FHAD1B1AJZ9 1412 aa27.42■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms