RNA–Protein interactions for RNA: ENST00000381077.9

PUDP-201, Transcript of pseudouridine 5'-phosphatase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PUDP, Length 2,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PUDP-201ENST00000381077 NISCHQ9Y2I1 1504 aa26.98■■□□□ 1.91
PUDP-201ENST00000381077 CCDC180Q9P1Z9 1646 aa23.27■■□□□ 1.31
PUDP-201ENST00000381077 ZCCHC6Q5VYS8 1495 aaKnown RBP22.83■■□□□ 1.25
PUDP-201ENST00000381077 DCAF1Q9Y4B6 1507 aa22.42■■□□□ 1.18
PUDP-201ENST00000381077 SHROOM4Q9ULL8 1493 aa22.3■■□□□ 1.16
PUDP-201ENST00000381077 MYO15BQ96JP2 1530 aa21.92■■□□□ 1.1
PUDP-201ENST00000381077 DCAF8L2P0C7V8 631 aa21.84■■□□□ 1.09
PUDP-201ENST00000381077 SUPT5HO00267 1087 aaKnown RBP21.83■■□□□ 1.08
PUDP-201ENST00000381077 ABCC9O60706 1549 aa21.5■■□□□ 1.03
PUDP-201ENST00000381077 NACADO15069 1562 aa21.49■■□□□ 1.03
PUDP-201ENST00000381077 CHIC1Q5VXU3 224 aa21.36■■□□□ 1.01
PUDP-201ENST00000381077 SCRIBQ14160 1630 aa21.34■■□□□ 1.01
PUDP-201ENST00000381077 RSF1Q96T23 1441 aaPredicted RBP21.17■□□□□ 0.98
PUDP-201ENST00000381077 RB1CC1Q8TDY2 1594 aa21.11■□□□□ 0.97
PUDP-201ENST00000381077 CECR2Q9BXF3 1484 aa20.81■□□□□ 0.92
PUDP-201ENST00000381077 MROH2BQ7Z745 1585 aa20.81■□□□□ 0.92
PUDP-201ENST00000381077 BAZ1AQ9NRL2 1556 aaPredicted RBP20.81■□□□□ 0.92
PUDP-201ENST00000381077 WIZO95785 1651 aa20.67■□□□□ 0.9
PUDP-201ENST00000381077 UNC13AQ9UPW8 1703 aa20.66■□□□□ 0.9
PUDP-201ENST00000381077 SMARCA4P51532 1647 aa20.58■□□□□ 0.89
PUDP-201ENST00000381077 TRIM41Q8WV44 630 aa20.56■□□□□ 0.88
PUDP-201ENST00000381077 TOP2AP11388 1531 aaKnown RBP20.55■□□□□ 0.88
PUDP-201ENST00000381077 EIF4G1Q04637 1599 aaKnown RBP20.5■□□□□ 0.87
PUDP-201ENST00000381077 LOC105371045A0A1W2PR82 267 aa20.47■□□□□ 0.87
PUDP-201ENST00000381077 BICRAQ9NZM4 1560 aa20.41■□□□□ 0.86
PUDP-201ENST00000381077 HRCP23327 699 aa20.4■□□□□ 0.86
PUDP-201ENST00000381077 PEG3Q9GZU2 1588 aa20.39■□□□□ 0.85
PUDP-201ENST00000381077 SMARCA2P51531 1590 aa20.35■□□□□ 0.85
PUDP-201ENST00000381077 PCGF6Q9BYE7 350 aa20.31■□□□□ 0.84
PUDP-201ENST00000381077 CCDC88BA6NC98 1476 aa20.3■□□□□ 0.84
PUDP-201ENST00000381077 TRIM26Q12899 539 aaPredicted RBP20.26■□□□□ 0.83
PUDP-201ENST00000381077 EEA1Q15075 1411 aa20.12■□□□□ 0.81
PUDP-201ENST00000381077 FAM9AQ8IZU1 332 aaPredicted RBP20.08■□□□□ 0.8
PUDP-201ENST00000381077 ATAD2BQ9ULI0 1458 aa20.07■□□□□ 0.8
PUDP-201ENST00000381077 PABPN1Q86U42 306 aaKnown RBP eCLIP20.06■□□□□ 0.8
PUDP-201ENST00000381077 ABCC8Q09428 1581 aa20.04■□□□□ 0.8
PUDP-201ENST00000381077 BAZ1BQ9UIG0 1483 aaKnown RBP19.98■□□□□ 0.79
PUDP-201ENST00000381077 WRNQ14191 1432 aaPredicted RBP eCLIP19.92■□□□□ 0.78
PUDP-201ENST00000381077 ZEB1P37275 1124 aaPredicted RBP19.91■□□□□ 0.78
PUDP-201ENST00000381077 TNIKQ9UKE5 1360 aa19.87■□□□□ 0.77
PUDP-201ENST00000381077 HMGXB3Q12766 1538 aa19.87■□□□□ 0.77
PUDP-201ENST00000381077 SOGA1O94964 1423 aa19.83■□□□□ 0.76
PUDP-201ENST00000381077 NCAPD3P42695 1498 aa19.82■□□□□ 0.76
PUDP-201ENST00000381077 CSRNP3Q8WYN3 585 aa19.81■□□□□ 0.76
PUDP-201ENST00000381077 GOLGA3Q08378 1498 aa19.79■□□□□ 0.76
PUDP-201ENST00000381077 SYNJ1O43426 1573 aa19.77■□□□□ 0.76
PUDP-201ENST00000381077 KIF21BO75037 1637 aa19.76■□□□□ 0.75
PUDP-201ENST00000381077 CEP162Q5TB80 1403 aa19.76■□□□□ 0.75
PUDP-201ENST00000381077 CEP164Q9UPV0 1460 aa19.73■□□□□ 0.75
PUDP-201ENST00000381077 TOP2BQ02880 1626 aa19.71■□□□□ 0.75
PUDP-201ENST00000381077 BIVM-ERCC5R4GMW8 1640 aa19.69■□□□□ 0.74
PUDP-201ENST00000381077 RUSC2Q8N2Y8 1516 aa19.67■□□□□ 0.74
PUDP-201ENST00000381077 EHMT2Q96KQ7 1210 aa19.66■□□□□ 0.74
PUDP-201ENST00000381077 PPARGC1BQ86YN6 1023 aaKnown RBP19.63■□□□□ 0.73
PUDP-201ENST00000381077 CFTRP13569 1480 aa19.56■□□□□ 0.72
PUDP-201ENST00000381077 UBTFP17480 764 aaKnown RBP19.55■□□□□ 0.72
PUDP-201ENST00000381077 PRDM2Q13029 1718 aa19.54■□□□□ 0.72
PUDP-201ENST00000381077 ERICH3Q5RHP9 1530 aa19.52■□□□□ 0.72
PUDP-201ENST00000381077 CLIP1P30622 1438 aa19.45■□□□□ 0.7
PUDP-201ENST00000381077 PRXQ9BXM0 1461 aa19.43■□□□□ 0.7
PUDP-201ENST00000381077 CUX1P39880 1505 aa19.43■□□□□ 0.7
PUDP-201ENST00000381077 VPS8Q8N3P4 1428 aa19.43■□□□□ 0.7
PUDP-201ENST00000381077 RAPGEF2Q9Y4G8 1499 aa19.42■□□□□ 0.7
PUDP-201ENST00000381077 KIF27Q86VH2 1401 aa19.37■□□□□ 0.69
PUDP-201ENST00000381077 CADPSQ9ULU8 1353 aa19.32■□□□□ 0.68
PUDP-201ENST00000381077 CCER1Q8TC90 406 aaPredicted RBP19.27■□□□□ 0.67
PUDP-201ENST00000381077 CC2D2AQ9P2K1 1620 aa19.25■□□□□ 0.67
PUDP-201ENST00000381077 APLP2Q06481 763 aa19.21■□□□□ 0.67
PUDP-201ENST00000381077 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.19■□□□□ 0.66
PUDP-201ENST00000381077 ARAP1Q96P48 1450 aa19.17■□□□□ 0.66
PUDP-201ENST00000381077 CUX2O14529 1486 aa19.11■□□□□ 0.65
PUDP-201ENST00000381077 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
PUDP-201ENST00000381077 FANCD2Q9BXW9 1451 aa19.09■□□□□ 0.65
PUDP-201ENST00000381077 IGF1RP08069 1367 aa19.09■□□□□ 0.65
PUDP-201ENST00000381077 DNMBPQ6XZF7 1577 aa19.09■□□□□ 0.65
PUDP-201ENST00000381077 MAP3K1Q13233 1512 aa19.06■□□□□ 0.64
PUDP-201ENST00000381077 ARHGAP35Q9NRY4 1499 aa19.04■□□□□ 0.64
PUDP-201ENST00000381077 TTBK1Q5TCY1 1321 aaPredicted RBP19.04■□□□□ 0.64
PUDP-201ENST00000381077 LAMC3Q9Y6N6 1575 aa19.04■□□□□ 0.64
PUDP-201ENST00000381077 ABCA10Q8WWZ4 1543 aa19.02■□□□□ 0.63
PUDP-201ENST00000381077 CARMIL1Q5VZK9 1371 aa19.02■□□□□ 0.63
PUDP-201ENST00000381077 CLSPNQ9HAW4 1339 aa18.99■□□□□ 0.63
PUDP-201ENST00000381077 RRBP1Q9P2E9 1410 aaKnown RBP18.99■□□□□ 0.63
PUDP-201ENST00000381077 TOPBP1Q92547 1522 aa18.97■□□□□ 0.63
PUDP-201ENST00000381077 CUL7Q14999 1698 aa18.96■□□□□ 0.63
PUDP-201ENST00000381077 POLA1P09884 1462 aaPredicted RBP18.93■□□□□ 0.62
PUDP-201ENST00000381077 FHAD1B1AJZ9 1412 aa18.92■□□□□ 0.62
PUDP-201ENST00000381077 EFCAB5A4FU69 1503 aa18.9■□□□□ 0.62
PUDP-201ENST00000381077 HNRNPUL2Q1KMD3 747 aaKnown RBP18.89■□□□□ 0.61
PUDP-201ENST00000381077 WDR97A6NE52 1622 aa18.88■□□□□ 0.61
PUDP-201ENST00000381077 TIAM1Q13009 1591 aa18.87■□□□□ 0.61
PUDP-201ENST00000381077 RANGAP1P46060 587 aaPredicted RBP18.87■□□□□ 0.61
PUDP-201ENST00000381077 PDS5BQ9NTI5 1447 aa18.84■□□□□ 0.61
PUDP-201ENST00000381077 KANK4Q5T7N3 995 aaPredicted RBP18.83■□□□□ 0.61
PUDP-201ENST00000381077 CCNB3Q8WWL7 1395 aa18.83■□□□□ 0.6
PUDP-201ENST00000381077 AQRO60306 1485 aaKnown RBP eCLIP18.82■□□□□ 0.6
PUDP-201ENST00000381077 CFAP43Q8NDM7 1665 aa18.82■□□□□ 0.6
PUDP-201ENST00000381077 CTTNBP2Q8WZ74 1663 aa18.82■□□□□ 0.6
PUDP-201ENST00000381077 NESP48681 1621 aa18.82■□□□□ 0.6
PUDP-201ENST00000381077 ZNF316A6NFI3 1004 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms