RNA–Protein interactions for RNA: ENST00000376895.2

SSX3-203, Transcript of SSX family member 3, humanhuman

TSL 5

Gene SSX3, Length 799 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3-203ENST00000376895 CHIC1Q5VXU3 224 aa21.05■□□□□ 0.96
SSX3-203ENST00000376895 AEBP2Q6ZN18 517 aaPredicted RBP20.88■□□□□ 0.93
SSX3-203ENST00000376895 PHF23Q9BUL5 403 aaPredicted RBP18.52■□□□□ 0.56
SSX3-203ENST00000376895 SENP3Q9H4L4 574 aaPredicted RBP17.7■□□□□ 0.42
SSX3-203ENST00000376895 PLPPR3Q6T4P5 718 aa17.4■□□□□ 0.38
SSX3-203ENST00000376895 FOXD1Q16676 465 aa16.29■□□□□ 0.2
SSX3-203ENST00000376895 ADRA2BP18089 450 aa16.19■□□□□ 0.18
SSX3-203ENST00000376895 PPP6R1Q9UPN7 881 aa16.11■□□□□ 0.17
SSX3-203ENST00000376895 KCNA4P22459 653 aa15.71■□□□□ 0.11
SSX3-203ENST00000376895 PIAS4Q8N2W9 510 aaPredicted RBP15.57■□□□□ 0.08
SSX3-203ENST00000376895 PPP4R3CPQ6ZMV5 832 aa15.38■□□□□ 0.05
SSX3-203ENST00000376895 EHMT2Q96KQ7 1210 aa15.38■□□□□ 0.05
SSX3-203ENST00000376895 NCBP3Q53F19 620 aaKnown RBP15.2■□□□□ 0.02
SSX3-203ENST00000376895 SLC4A1APQ9BWU0 796 aaKnown RBP15.1■□□□□ 0.01
SSX3-203ENST00000376895 NPM3O75607 178 aaKnown RBP14.93□□□□□ -0.02
SSX3-203ENST00000376895 CSRNP3Q8WYN3 585 aa14.87□□□□□ -0.03
SSX3-203ENST00000376895 SCAF1Q9H7N4 1312 aaKnown RBP14.87□□□□□ -0.03
SSX3-203ENST00000376895 MSH5O43196 834 aa14.85□□□□□ -0.03
SSX3-203ENST00000376895 CNKSR2Q8WXI2 1034 aa14.83□□□□□ -0.04
SSX3-203ENST00000376895 ZBTB22O15209 634 aa14.45□□□□□ -0.1
SSX3-203ENST00000376895 MAPK8IP2Q13387 824 aaPredicted RBP14.45□□□□□ -0.1
SSX3-203ENST00000376895 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
SSX3-203ENST00000376895 RNF216Q9NWF9 866 aaPredicted RBP14.39□□□□□ -0.11
SSX3-203ENST00000376895 FOXD4L1Q9NU39 408 aa14.33□□□□□ -0.12
SSX3-203ENST00000376895 DMRT2Q9Y5R5 561 aa14.2□□□□□ -0.14
SSX3-203ENST00000376895 HOXD11P31277 338 aaPredicted RBP14.16□□□□□ -0.14
SSX3-203ENST00000376895 POTEDQ86YR6 584 aa13.94□□□□□ -0.18
SSX3-203ENST00000376895 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
SSX3-203ENST00000376895 MYCNP04198 464 aaPredicted RBP13.84□□□□□ -0.19
SSX3-203ENST00000376895 ATXN8OSP0DMR3 200 aa13.77□□□□□ -0.21
SSX3-203ENST00000376895 DCAF8L1A6NGE4 600 aa13.58□□□□□ -0.24
SSX3-203ENST00000376895 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.5□□□□□ -0.25
SSX3-203ENST00000376895 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.45□□□□□ -0.26
SSX3-203ENST00000376895 FKBP8Q14318 412 aa13.45□□□□□ -0.26
SSX3-203ENST00000376895 HNRNPUL2Q1KMD3 747 aaKnown RBP13.45□□□□□ -0.26
SSX3-203ENST00000376895 SAMD1Q6SPF0 538 aaPredicted RBP13.41□□□□□ -0.26
SSX3-203ENST00000376895 AMER1Q5JTC6 1135 aaPredicted RBP13.39□□□□□ -0.27
SSX3-203ENST00000376895 U3KPZ7 1027 aaPredicted RBP13.35□□□□□ -0.27
SSX3-203ENST00000376895 ATF5Q9Y2D1 282 aaPredicted RBP13.32□□□□□ -0.28
SSX3-203ENST00000376895 RTN4Q9NQC3 1192 aaKnown RBP13.31□□□□□ -0.28
SSX3-203ENST00000376895 APLP2Q06481 763 aa13.19□□□□□ -0.3
SSX3-203ENST00000376895 SLC24A1O60721 1099 aa13.09□□□□□ -0.31
SSX3-203ENST00000376895 ZNF219Q9P2Y4 722 aaPredicted RBP13.08□□□□□ -0.32
SSX3-203ENST00000376895 SPDYE4A6NLX3 237 aa12.85□□□□□ -0.35
SSX3-203ENST00000376895 FBXO3Q9UK99 471 aa12.84□□□□□ -0.35
SSX3-203ENST00000376895 FBLN2P98095 1184 aa12.82□□□□□ -0.36
SSX3-203ENST00000376895 TRHP20396 242 aaPredicted RBP12.8□□□□□ -0.36
SSX3-203ENST00000376895 MKRN4PQ13434 485 aaPredicted RBP12.79□□□□□ -0.36
SSX3-203ENST00000376895 SPINK5Q9NQ38 1064 aaPredicted RBP12.77□□□□□ -0.37
SSX3-203ENST00000376895 RNF39Q9H2S5 420 aa12.75□□□□□ -0.37
SSX3-203ENST00000376895 CAPN15O75808 1086 aa12.72□□□□□ -0.37
SSX3-203ENST00000376895 POLA2Q14181 598 aa12.71□□□□□ -0.37
SSX3-203ENST00000376895 PROM2Q8N271 834 aa12.71□□□□□ -0.37
SSX3-203ENST00000376895 C1QBPQ07021 282 aaKnown RBP12.65□□□□□ -0.38
SSX3-203ENST00000376895 VASPP50552 380 aaPredicted RBP12.63□□□□□ -0.39
SSX3-203ENST00000376895 ZBTB12Q9Y330 459 aaPredicted RBP12.63□□□□□ -0.39
SSX3-203ENST00000376895 ABCB7O75027 752 aa12.52□□□□□ -0.41
SSX3-203ENST00000376895 IFNLR1Q8IU57 520 aaPredicted RBP12.46□□□□□ -0.41
SSX3-203ENST00000376895 DCAF8L2P0C7V8 631 aa12.34□□□□□ -0.43
SSX3-203ENST00000376895 DSG3P32926 999 aa12.33□□□□□ -0.44
SSX3-203ENST00000376895 ZNF692Q9BU19 519 aaPredicted RBP12.33□□□□□ -0.44
SSX3-203ENST00000376895 PLCB2Q00722 1185 aa12.32□□□□□ -0.44
SSX3-203ENST00000376895 SPDYE2BA6NHP3 402 aa12.31□□□□□ -0.44
SSX3-203ENST00000376895 SPDYE6P0CI01 402 aa12.31□□□□□ -0.44
SSX3-203ENST00000376895 SPDYE2Q495Y8 402 aa12.31□□□□□ -0.44
SSX3-203ENST00000376895 OSCARQ8IYS5 282 aa12.29□□□□□ -0.44
SSX3-203ENST00000376895 PKD2Q13563 968 aa12.28□□□□□ -0.44
SSX3-203ENST00000376895 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
SSX3-203ENST00000376895 KLHL34Q8N239 644 aa12.26□□□□□ -0.45
SSX3-203ENST00000376895 SSUH2Q9Y2M2 353 aa12.26□□□□□ -0.45
SSX3-203ENST00000376895 SPOCK2Q92563 424 aa12.24□□□□□ -0.45
SSX3-203ENST00000376895 PABPN1Q86U42 306 aaKnown RBP eCLIP12.19□□□□□ -0.46
SSX3-203ENST00000376895 PLCD3Q8N3E9 789 aa12.19□□□□□ -0.46
SSX3-203ENST00000376895 HAP1P54257 671 aaPredicted RBP12.16□□□□□ -0.46
SSX3-203ENST00000376895 ECM2O94769 699 aaPredicted RBP12.14□□□□□ -0.47
SSX3-203ENST00000376895 NISCHQ9Y2I1 1504 aa12.12□□□□□ -0.47
SSX3-203ENST00000376895 MIER1Q8N108 512 aa12.1□□□□□ -0.47
SSX3-203ENST00000376895 PLEKHG5O94827 1062 aa12.07□□□□□ -0.48
SSX3-203ENST00000376895 ZBTB47Q9UFB7 747 aaPredicted RBP12.06□□□□□ -0.48
SSX3-203ENST00000376895 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.05□□□□□ -0.48
SSX3-203ENST00000376895 BBXQ8WY36 941 aaPredicted RBP12.02□□□□□ -0.49
SSX3-203ENST00000376895 CACNB1Q02641 598 aaPredicted RBP11.98□□□□□ -0.49
SSX3-203ENST00000376895 RGL2O15211 777 aa11.97□□□□□ -0.49
SSX3-203ENST00000376895 VSIG10Q8N0Z9 540 aa11.97□□□□□ -0.49
SSX3-203ENST00000376895 CIZ1Q9ULV3 898 aaPredicted RBP11.95□□□□□ -0.5
SSX3-203ENST00000376895 NPM1P06748 294 aaKnown RBP eCLIP11.92□□□□□ -0.5
SSX3-203ENST00000376895 PAXIP1Q6ZW49 1069 aaPredicted RBP11.91□□□□□ -0.5
SSX3-203ENST00000376895 TRIM41Q8WV44 630 aa11.91□□□□□ -0.5
SSX3-203ENST00000376895 BCANQ96GW7 911 aa11.91□□□□□ -0.5
SSX3-203ENST00000376895 CFAP44Q96MT7 982 aa11.89□□□□□ -0.51
SSX3-203ENST00000376895 SPRYD3Q8NCJ5 442 aa11.82□□□□□ -0.52
SSX3-203ENST00000376895 RBM42Q9BTD8 480 aaKnown RBP11.82□□□□□ -0.52
SSX3-203ENST00000376895 CHGAP10645 457 aaKnown RBP11.81□□□□□ -0.52
SSX3-203ENST00000376895 GSE1Q14687 1217 aa11.81□□□□□ -0.52
SSX3-203ENST00000376895 SPDYE1Q8NFV5 336 aaPredicted RBP11.8□□□□□ -0.52
SSX3-203ENST00000376895 AKT1S1Q96B36 256 aa11.76□□□□□ -0.53
SSX3-203ENST00000376895 HS6ST3Q8IZP7 471 aa11.75□□□□□ -0.53
SSX3-203ENST00000376895 KDM2AQ9Y2K7 1162 aa11.75□□□□□ -0.53
SSX3-203ENST00000376895 NUBP1P53384 320 aa11.72□□□□□ -0.53
SSX3-203ENST00000376895 TAOK2Q9UL54 1235 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms