RNA–Protein interactions for RNA: ENST00000376545.7

ABCF1-202, Transcript of ATP binding cassette subfamily F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ABCF1, Length 3,131 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCF1-202ENST00000376545 NISCHQ9Y2I1 1504 aa22.41■■□□□ 1.18
ABCF1-202ENST00000376545 CCDC180Q9P1Z9 1646 aa19.18■□□□□ 0.66
ABCF1-202ENST00000376545 ZCCHC6Q5VYS8 1495 aaKnown RBP19■□□□□ 0.63
ABCF1-202ENST00000376545 SHROOM4Q9ULL8 1493 aa18.78■□□□□ 0.6
ABCF1-202ENST00000376545 DCAF1Q9Y4B6 1507 aa18.53■□□□□ 0.56
ABCF1-202ENST00000376545 SUPT5HO00267 1087 aaKnown RBP18.41■□□□□ 0.54
ABCF1-202ENST00000376545 DCAF8L2P0C7V8 631 aa18.13■□□□□ 0.49
ABCF1-202ENST00000376545 CHIC1Q5VXU3 224 aa18.09■□□□□ 0.49
ABCF1-202ENST00000376545 MYO15BQ96JP2 1530 aa18.07■□□□□ 0.48
ABCF1-202ENST00000376545 ABCC9O60706 1549 aa17.93■□□□□ 0.46
ABCF1-202ENST00000376545 SCRIBQ14160 1630 aa17.74■□□□□ 0.43
ABCF1-202ENST00000376545 RSF1Q96T23 1441 aaPredicted RBP17.69■□□□□ 0.42
ABCF1-202ENST00000376545 NACADO15069 1562 aa17.65■□□□□ 0.42
ABCF1-202ENST00000376545 HRCP23327 699 aa17.57■□□□□ 0.4
ABCF1-202ENST00000376545 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
ABCF1-202ENST00000376545 LOC105371045A0A1W2PR82 267 aa17.44■□□□□ 0.38
ABCF1-202ENST00000376545 PCGF6Q9BYE7 350 aa17.41■□□□□ 0.38
ABCF1-202ENST00000376545 CECR2Q9BXF3 1484 aa17.38■□□□□ 0.37
ABCF1-202ENST00000376545 MROH2BQ7Z745 1585 aa17.37■□□□□ 0.37
ABCF1-202ENST00000376545 WIZO95785 1651 aa17.29■□□□□ 0.36
ABCF1-202ENST00000376545 BAZ1AQ9NRL2 1556 aaPredicted RBP17.26■□□□□ 0.35
ABCF1-202ENST00000376545 TRIM41Q8WV44 630 aa17.24■□□□□ 0.35
ABCF1-202ENST00000376545 EIF4G1Q04637 1599 aaKnown RBP17.22■□□□□ 0.35
ABCF1-202ENST00000376545 TRIM26Q12899 539 aaPredicted RBP17.22■□□□□ 0.35
ABCF1-202ENST00000376545 UNC13AQ9UPW8 1703 aa17.14■□□□□ 0.33
ABCF1-202ENST00000376545 SMARCA4P51532 1647 aa17.08■□□□□ 0.32
ABCF1-202ENST00000376545 TOP2AP11388 1531 aaKnown RBP17.08■□□□□ 0.32
ABCF1-202ENST00000376545 PPARGC1BQ86YN6 1023 aaKnown RBP17.05■□□□□ 0.32
ABCF1-202ENST00000376545 SMARCA2P51531 1590 aa16.97■□□□□ 0.31
ABCF1-202ENST00000376545 FAM9AQ8IZU1 332 aaPredicted RBP16.96■□□□□ 0.31
ABCF1-202ENST00000376545 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
ABCF1-202ENST00000376545 BICRAQ9NZM4 1560 aa16.88■□□□□ 0.29
ABCF1-202ENST00000376545 ZEB1P37275 1124 aaPredicted RBP16.88■□□□□ 0.29
ABCF1-202ENST00000376545 PEG3Q9GZU2 1588 aa16.86■□□□□ 0.29
ABCF1-202ENST00000376545 ABCC8Q09428 1581 aa16.84■□□□□ 0.29
ABCF1-202ENST00000376545 WRNQ14191 1432 aaPredicted RBP eCLIP16.74■□□□□ 0.27
ABCF1-202ENST00000376545 EEA1Q15075 1411 aa16.72■□□□□ 0.27
ABCF1-202ENST00000376545 EHMT2Q96KQ7 1210 aa16.68■□□□□ 0.26
ABCF1-202ENST00000376545 SOGA1O94964 1423 aa16.67■□□□□ 0.26
ABCF1-202ENST00000376545 TNIKQ9UKE5 1360 aa16.66■□□□□ 0.26
ABCF1-202ENST00000376545 CEP162Q5TB80 1403 aa16.62■□□□□ 0.25
ABCF1-202ENST00000376545 RUSC2Q8N2Y8 1516 aa16.6■□□□□ 0.25
ABCF1-202ENST00000376545 ATAD2BQ9ULI0 1458 aa16.59■□□□□ 0.25
ABCF1-202ENST00000376545 PABPN1Q86U42 306 aaKnown RBP eCLIP16.57■□□□□ 0.24
ABCF1-202ENST00000376545 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
ABCF1-202ENST00000376545 SYNJ1O43426 1573 aa16.55■□□□□ 0.24
ABCF1-202ENST00000376545 GOLGA3Q08378 1498 aa16.54■□□□□ 0.24
ABCF1-202ENST00000376545 KIF21BO75037 1637 aa16.53■□□□□ 0.24
ABCF1-202ENST00000376545 BAZ1BQ9UIG0 1483 aaKnown RBP16.49■□□□□ 0.23
ABCF1-202ENST00000376545 CEP164Q9UPV0 1460 aa16.46■□□□□ 0.22
ABCF1-202ENST00000376545 TOP2BQ02880 1626 aa16.41■□□□□ 0.22
ABCF1-202ENST00000376545 BIVM-ERCC5R4GMW8 1640 aa16.4■□□□□ 0.22
ABCF1-202ENST00000376545 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.39■□□□□ 0.21
ABCF1-202ENST00000376545 UBTFP17480 764 aaKnown RBP16.36■□□□□ 0.21
ABCF1-202ENST00000376545 CCER1Q8TC90 406 aaPredicted RBP16.36■□□□□ 0.21
ABCF1-202ENST00000376545 HMGXB3Q12766 1538 aa16.35■□□□□ 0.21
ABCF1-202ENST00000376545 NCAPD3P42695 1498 aa16.3■□□□□ 0.2
ABCF1-202ENST00000376545 CLIP1P30622 1438 aa16.29■□□□□ 0.2
ABCF1-202ENST00000376545 RAPGEF2Q9Y4G8 1499 aa16.29■□□□□ 0.2
ABCF1-202ENST00000376545 VPS8Q8N3P4 1428 aa16.29■□□□□ 0.2
ABCF1-202ENST00000376545 ERICH3Q5RHP9 1530 aa16.26■□□□□ 0.19
ABCF1-202ENST00000376545 PRXQ9BXM0 1461 aa16.22■□□□□ 0.19
ABCF1-202ENST00000376545 CUX1P39880 1505 aa16.19■□□□□ 0.18
ABCF1-202ENST00000376545 PRDM2Q13029 1718 aa16.19■□□□□ 0.18
ABCF1-202ENST00000376545 PELP1Q8IZL8 1130 aaKnown RBP16.18■□□□□ 0.18
ABCF1-202ENST00000376545 TTBK1Q5TCY1 1321 aaPredicted RBP16.18■□□□□ 0.18
ABCF1-202ENST00000376545 CFTRP13569 1480 aa16.17■□□□□ 0.18
ABCF1-202ENST00000376545 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
ABCF1-202ENST00000376545 ARAP1Q96P48 1450 aa16.11■□□□□ 0.17
ABCF1-202ENST00000376545 DIEXFQ68CQ4 756 aaKnown RBP16.1■□□□□ 0.17
ABCF1-202ENST00000376545 KIF27Q86VH2 1401 aa16.06■□□□□ 0.16
ABCF1-202ENST00000376545 ZNF316A6NFI3 1004 aaPredicted RBP16.03■□□□□ 0.16
ABCF1-202ENST00000376545 ACIN1Q9UKV3 1341 aaKnown RBP16.02■□□□□ 0.16
ABCF1-202ENST00000376545 APLP2Q06481 763 aa16.01■□□□□ 0.15
ABCF1-202ENST00000376545 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
ABCF1-202ENST00000376545 RRBP1Q9P2E9 1410 aaKnown RBP15.96■□□□□ 0.15
ABCF1-202ENST00000376545 ARHGAP35Q9NRY4 1499 aa15.96■□□□□ 0.14
ABCF1-202ENST00000376545 NEUROD1Q13562 356 aa15.95■□□□□ 0.14
ABCF1-202ENST00000376545 CLSPNQ9HAW4 1339 aa15.95■□□□□ 0.14
ABCF1-202ENST00000376545 CUX2O14529 1486 aa15.93■□□□□ 0.14
ABCF1-202ENST00000376545 CADPSQ9ULU8 1353 aa15.92■□□□□ 0.14
ABCF1-202ENST00000376545 MAP3K1Q13233 1512 aa15.9■□□□□ 0.14
ABCF1-202ENST00000376545 IGF1RP08069 1367 aa15.9■□□□□ 0.14
ABCF1-202ENST00000376545 KANK4Q5T7N3 995 aaPredicted RBP15.9■□□□□ 0.14
ABCF1-202ENST00000376545 DHX57Q6P158 1386 aaKnown RBP15.88■□□□□ 0.13
ABCF1-202ENST00000376545 CENPBP07199 599 aaPredicted RBP15.88■□□□□ 0.13
ABCF1-202ENST00000376545 RANGAP1P46060 587 aaPredicted RBP15.87■□□□□ 0.13
ABCF1-202ENST00000376545 FGD5Q6ZNL6 1462 aa15.85■□□□□ 0.13
ABCF1-202ENST00000376545 CC2D2AQ9P2K1 1620 aa15.83■□□□□ 0.13
ABCF1-202ENST00000376545 TIAM1Q13009 1591 aa15.82■□□□□ 0.12
ABCF1-202ENST00000376545 CARMIL1Q5VZK9 1371 aa15.79■□□□□ 0.12
ABCF1-202ENST00000376545 CCNB3Q8WWL7 1395 aa15.79■□□□□ 0.12
ABCF1-202ENST00000376545 CFAP43Q8NDM7 1665 aa15.77■□□□□ 0.12
ABCF1-202ENST00000376545 DNMBPQ6XZF7 1577 aa15.77■□□□□ 0.11
ABCF1-202ENST00000376545 GTF3C3Q9Y5Q9 886 aa15.76■□□□□ 0.11
ABCF1-202ENST00000376545 MIER1Q8N108 512 aa15.75■□□□□ 0.11
ABCF1-202ENST00000376545 FANCD2Q9BXW9 1451 aa15.75■□□□□ 0.11
ABCF1-202ENST00000376545 ABCA10Q8WWZ4 1543 aa15.74■□□□□ 0.11
ABCF1-202ENST00000376545 LRRC9Q6ZRR7 1453 aa15.73■□□□□ 0.11
ABCF1-202ENST00000376545 CUL7Q14999 1698 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms