RNA–Protein interactions for RNA: ENST00000375663.7

VARS-215, Transcript of valyl-tRNA synthetase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS, Length 4,312 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-215ENST00000375663 NISCHQ9Y2I1 1504 aa29.66■■■□□ 2.34
VARS-215ENST00000375663 DCAF8L2P0C7V8 631 aa28.6■■■□□ 2.17
VARS-215ENST00000375663 SUPT5HO00267 1087 aaKnown RBP28.25■■■□□ 2.11
VARS-215ENST00000375663 SHROOM4Q9ULL8 1493 aa27.94■■■□□ 2.06
VARS-215ENST00000375663 PCGF6Q9BYE7 350 aa26.95■■□□□ 1.9
VARS-215ENST00000375663 EHMT2Q96KQ7 1210 aa26.8■■□□□ 1.88
VARS-215ENST00000375663 FAM9AQ8IZU1 332 aaPredicted RBP26.46■■□□□ 1.83
VARS-215ENST00000375663 HRCP23327 699 aa26.24■■□□□ 1.79
VARS-215ENST00000375663 ZEB1P37275 1124 aaPredicted RBP26.17■■□□□ 1.78
VARS-215ENST00000375663 TRIM41Q8WV44 630 aa26.13■■□□□ 1.77
VARS-215ENST00000375663 CHIC1Q5VXU3 224 aa26.08■■□□□ 1.77
VARS-215ENST00000375663 TTBK1Q5TCY1 1321 aaPredicted RBP25.98■■□□□ 1.75
VARS-215ENST00000375663 TRIM26Q12899 539 aaPredicted RBP25.89■■□□□ 1.73
VARS-215ENST00000375663 CCER1Q8TC90 406 aaPredicted RBP25.86■■□□□ 1.73
VARS-215ENST00000375663 APLP2Q06481 763 aa25.85■■□□□ 1.73
VARS-215ENST00000375663 LOC105371045A0A1W2PR82 267 aa25.85■■□□□ 1.73
VARS-215ENST00000375663 CENPBP07199 599 aaPredicted RBP25.78■■□□□ 1.72
VARS-215ENST00000375663 PELP1Q8IZL8 1130 aaKnown RBP25.77■■□□□ 1.72
VARS-215ENST00000375663 PPARGC1BQ86YN6 1023 aaKnown RBP25.74■■□□□ 1.71
VARS-215ENST00000375663 UBTFP17480 764 aaKnown RBP25.44■■□□□ 1.66
VARS-215ENST00000375663 RANGAP1P46060 587 aaPredicted RBP25.39■■□□□ 1.66
VARS-215ENST00000375663 YTHDC1Q96MU7 727 aaKnown RBP25.29■■□□□ 1.64
VARS-215ENST00000375663 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.05■■□□□ 1.6
VARS-215ENST00000375663 MYT1Q01538 1121 aa25.03■■□□□ 1.6
VARS-215ENST00000375663 DIEXFQ68CQ4 756 aaKnown RBP24.89■■□□□ 1.58
VARS-215ENST00000375663 HNRNPUL2Q1KMD3 747 aaKnown RBP24.85■■□□□ 1.57
VARS-215ENST00000375663 ATP1B4Q9UN42 357 aaPredicted RBP24.82■■□□□ 1.56
VARS-215ENST00000375663 ZCCHC6Q5VYS8 1495 aaKnown RBP24.78■■□□□ 1.56
VARS-215ENST00000375663 NEFLP07196 543 aa24.72■■□□□ 1.55
VARS-215ENST00000375663 DCAF1Q9Y4B6 1507 aa24.71■■□□□ 1.55
VARS-215ENST00000375663 ERICH6Q7L0X2 663 aa24.67■■□□□ 1.54
VARS-215ENST00000375663 MYO15BQ96JP2 1530 aa24.61■■□□□ 1.53
VARS-215ENST00000375663 GTF3C3Q9Y5Q9 886 aa24.6■■□□□ 1.53
VARS-215ENST00000375663 ITGAEP38570 1179 aa24.59■■□□□ 1.53
VARS-215ENST00000375663 ACIN1Q9UKV3 1341 aaKnown RBP24.46■■□□□ 1.51
VARS-215ENST00000375663 ZNF316A6NFI3 1004 aaPredicted RBP24.37■■□□□ 1.49
VARS-215ENST00000375663 ABCC9O60706 1549 aa24.35■■□□□ 1.49
VARS-215ENST00000375663 CSRNP3Q8WYN3 585 aa24.21■■□□□ 1.47
VARS-215ENST00000375663 CCDC180Q9P1Z9 1646 aa24.18■■□□□ 1.46
VARS-215ENST00000375663 SCAF1Q9H7N4 1312 aaKnown RBP24.17■■□□□ 1.46
VARS-215ENST00000375663 PABPN1Q86U42 306 aaKnown RBP eCLIP24.12■■□□□ 1.453e-7■■■■■ 28.6
VARS-215ENST00000375663 NEUROD1Q13562 356 aa24.11■■□□□ 1.45
VARS-215ENST00000375663 SCRIBQ14160 1630 aa24.09■■□□□ 1.45
VARS-215ENST00000375663 FAM50AQ14320 339 aaKnown RBP24■■□□□ 1.43
VARS-215ENST00000375663 BCANQ96GW7 911 aa23.96■■□□□ 1.43
VARS-215ENST00000375663 RSF1Q96T23 1441 aaPredicted RBP23.92■■□□□ 1.42
VARS-215ENST00000375663 POLR3GLQ9BT43 218 aa23.91■■□□□ 1.42
VARS-215ENST00000375663 CNGB1Q14028 1251 aaPredicted RBP23.85■■□□□ 1.41
VARS-215ENST00000375663 ANP32CO43423 234 aa23.77■■□□□ 1.4
VARS-215ENST00000375663 MIER1Q8N108 512 aa23.72■■□□□ 1.39
VARS-215ENST00000375663 CLSPNQ9HAW4 1339 aa23.64■■□□□ 1.38
VARS-215ENST00000375663 TRIM52Q96A61 297 aa23.64■■□□□ 1.37
VARS-215ENST00000375663 CEP162Q5TB80 1403 aa23.59■■□□□ 1.37
VARS-215ENST00000375663 P3H3Q8IVL6 736 aa23.55■■□□□ 1.36
VARS-215ENST00000375663 CDK11AQ9UQ88 783 aaPredicted RBP23.55■■□□□ 1.36
VARS-215ENST00000375663 DAXXQ9UER7 740 aaPredicted RBP23.54■■□□□ 1.36
VARS-215ENST00000375663 FKBP8Q14318 412 aa23.51■■□□□ 1.35
VARS-215ENST00000375663 CLIP1P30622 1438 aa23.49■■□□□ 1.35
VARS-215ENST00000375663 DDX10Q13206 875 aaKnown RBP23.49■■□□□ 1.35
VARS-215ENST00000375663 RTL5Q5HYW3 569 aaPredicted RBP23.46■■□□□ 1.35
VARS-215ENST00000375663 RB1CC1Q8TDY2 1594 aa23.46■■□□□ 1.35
VARS-215ENST00000375663 EEA1Q15075 1411 aa23.44■■□□□ 1.34
VARS-215ENST00000375663 TNIKQ9UKE5 1360 aa23.42■■□□□ 1.34
VARS-215ENST00000375663 GOLGA3Q08378 1498 aa23.39■■□□□ 1.33
VARS-215ENST00000375663 CECR2Q9BXF3 1484 aa23.33■■□□□ 1.33
VARS-215ENST00000375663 ZNF326Q5BKZ1 582 aaKnown RBP23.33■■□□□ 1.33
VARS-215ENST00000375663 MYT1LQ9UL68 1186 aa23.33■■□□□ 1.32
VARS-215ENST00000375663 TONSLQ96HA7 1378 aa23.31■■□□□ 1.32
VARS-215ENST00000375663 HNRNPUQ00839 825 aaKnown RBP eCLIP23.27■■□□□ 1.32
VARS-215ENST00000375663 WRNQ14191 1432 aaPredicted RBP eCLIP23.25■■□□□ 1.31
VARS-215ENST00000375663 HIRIP3Q9BW71 556 aaPredicted RBP23.18■■□□□ 1.3
VARS-215ENST00000375663 NACADO15069 1562 aa23.18■■□□□ 1.3
VARS-215ENST00000375663 ARID3CA6NKF2 412 aa23.17■■□□□ 1.3
VARS-215ENST00000375663 SOGA1O94964 1423 aa23.16■■□□□ 1.3
VARS-215ENST00000375663 CEP164Q9UPV0 1460 aa23.15■■□□□ 1.3
VARS-215ENST00000375663 BAZ1AQ9NRL2 1556 aaPredicted RBP23.09■■□□□ 1.29
VARS-215ENST00000375663 FAM9BQ8IZU0 186 aa23.09■■□□□ 1.29
VARS-215ENST00000375663 MROH2BQ7Z745 1585 aa23.09■■□□□ 1.29
VARS-215ENST00000375663 ANP32AP39687 249 aaKnown RBP23.05■■□□□ 1.28
VARS-215ENST00000375663 SUPT16HQ9Y5B9 1047 aaKnown RBP23.01■■□□□ 1.27
VARS-215ENST00000375663 CHIC2Q9UKJ5 165 aa23■■□□□ 1.27
VARS-215ENST00000375663 IRX6P78412 446 aaPredicted RBP22.99■■□□□ 1.27
VARS-215ENST00000375663 CCDC88BA6NC98 1476 aa22.99■■□□□ 1.27
VARS-215ENST00000375663 SLC4A1APQ9BWU0 796 aaKnown RBP22.99■■□□□ 1.27
VARS-215ENST00000375663 ABCC8Q09428 1581 aa22.96■■□□□ 1.27
VARS-215ENST00000375663 MTUS2Q5JR59 1369 aa22.93■■□□□ 1.26
VARS-215ENST00000375663 MRS2Q9HD23 443 aa22.93■■□□□ 1.26
VARS-215ENST00000375663 ZNF777Q9ULD5 760 aaPredicted RBP22.93■■□□□ 1.26
VARS-215ENST00000375663 ANP32EQ9BTT0 268 aa22.92■■□□□ 1.26
VARS-215ENST00000375663 NPM2Q86SE8 214 aaKnown RBP22.91■■□□□ 1.26
VARS-215ENST00000375663 SIN3AQ96ST3 1273 aa22.89■■□□□ 1.26
VARS-215ENST00000375663 VPS8Q8N3P4 1428 aa22.89■■□□□ 1.26
VARS-215ENST00000375663 FBLN2P98095 1184 aa22.89■■□□□ 1.25
VARS-215ENST00000375663 KIF27Q86VH2 1401 aa22.86■■□□□ 1.25
VARS-215ENST00000375663 BAZ1BQ9UIG0 1483 aaKnown RBP22.85■■□□□ 1.25
VARS-215ENST00000375663 CCDC136Q96JN2 1154 aa22.85■■□□□ 1.25
VARS-215ENST00000375663 EIF4G2P78344 907 aaKnown RBP eCLIP22.84■■□□□ 1.25
VARS-215ENST00000375663 CCNB3Q8WWL7 1395 aa22.84■■□□□ 1.25
VARS-215ENST00000375663 RRP7BPQ9NSQ0 103 aa22.8■■□□□ 1.24
VARS-215ENST00000375663 TMC1Q8TDI8 760 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms