RNA–Protein interactions for RNA: ENST00000372409.7

PCIF1-201, Transcript of PDX1 C-terminal inhibiting factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCIF1, Length 2,747 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1-201ENST00000372409 NISCHQ9Y2I1 1504 aa34.41■■■■□ 3.1
PCIF1-201ENST00000372409 SHROOM4Q9ULL8 1493 aa29.56■■■□□ 2.32
PCIF1-201ENST00000372409 CCDC180Q9P1Z9 1646 aa29.19■■■□□ 2.26
PCIF1-201ENST00000372409 ZCCHC6Q5VYS8 1495 aaKnown RBP29.1■■■□□ 2.25
PCIF1-201ENST00000372409 SUPT5HO00267 1087 aaKnown RBP29.02■■■□□ 2.24
PCIF1-201ENST00000372409 DCAF8L2P0C7V8 631 aa28.77■■■□□ 2.2
PCIF1-201ENST00000372409 DCAF1Q9Y4B6 1507 aa28.15■■■□□ 2.1
PCIF1-201ENST00000372409 CHIC1Q5VXU3 224 aa28.14■■■□□ 2.1
PCIF1-201ENST00000372409 MYO15BQ96JP2 1530 aa28.03■■■□□ 2.08
PCIF1-201ENST00000372409 SCRIBQ14160 1630 aa27.49■■□□□ 1.99
PCIF1-201ENST00000372409 ABCC9O60706 1549 aa27.48■■□□□ 1.99
PCIF1-201ENST00000372409 PCGF6Q9BYE7 350 aa27.41■■□□□ 1.98
PCIF1-201ENST00000372409 LOC105371045A0A1W2PR82 267 aa27.38■■□□□ 1.97
PCIF1-201ENST00000372409 HRCP23327 699 aa27.37■■□□□ 1.97
PCIF1-201ENST00000372409 RSF1Q96T23 1441 aaPredicted RBP27.27■■□□□ 1.96
PCIF1-201ENST00000372409 RB1CC1Q8TDY2 1594 aa27.03■■□□□ 1.92
PCIF1-201ENST00000372409 NACADO15069 1562 aa27■■□□□ 1.91
PCIF1-201ENST00000372409 TRIM41Q8WV44 630 aa26.99■■□□□ 1.91
PCIF1-201ENST00000372409 CECR2Q9BXF3 1484 aa26.88■■□□□ 1.89
PCIF1-201ENST00000372409 PPARGC1BQ86YN6 1023 aaKnown RBP26.87■■□□□ 1.89
PCIF1-201ENST00000372409 FAM9AQ8IZU1 332 aaPredicted RBP26.85■■□□□ 1.89
PCIF1-201ENST00000372409 TRIM26Q12899 539 aaPredicted RBP26.82■■□□□ 1.88
PCIF1-201ENST00000372409 MROH2BQ7Z745 1585 aa26.79■■□□□ 1.88
PCIF1-201ENST00000372409 EHMT2Q96KQ7 1210 aa26.69■■□□□ 1.86
PCIF1-201ENST00000372409 WIZO95785 1651 aa26.67■■□□□ 1.86
PCIF1-201ENST00000372409 BAZ1AQ9NRL2 1556 aaPredicted RBP26.45■■□□□ 1.83
PCIF1-201ENST00000372409 ZEB1P37275 1124 aaPredicted RBP26.24■■□□□ 1.79
PCIF1-201ENST00000372409 EIF4G1Q04637 1599 aaKnown RBP26.23■■□□□ 1.79
PCIF1-201ENST00000372409 SMARCA4P51532 1647 aa26.21■■□□□ 1.79
PCIF1-201ENST00000372409 TOP2AP11388 1531 aaKnown RBP26.2■■□□□ 1.79
PCIF1-201ENST00000372409 UNC13AQ9UPW8 1703 aa26.18■■□□□ 1.78
PCIF1-201ENST00000372409 CCDC88BA6NC98 1476 aa26.13■■□□□ 1.77
PCIF1-201ENST00000372409 ABCC8Q09428 1581 aa26.12■■□□□ 1.77
PCIF1-201ENST00000372409 SMARCA2P51531 1590 aa26.07■■□□□ 1.76
PCIF1-201ENST00000372409 PABPN1Q86U42 306 aaKnown RBP eCLIP26.01■■□□□ 1.76
PCIF1-201ENST00000372409 SOGA1O94964 1423 aa25.88■■□□□ 1.73
PCIF1-201ENST00000372409 TTBK1Q5TCY1 1321 aaPredicted RBP25.83■■□□□ 1.73
PCIF1-201ENST00000372409 BICRAQ9NZM4 1560 aa25.82■■□□□ 1.72
PCIF1-201ENST00000372409 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.8■■□□□ 1.72
PCIF1-201ENST00000372409 CEP162Q5TB80 1403 aa25.78■■□□□ 1.72
PCIF1-201ENST00000372409 CCER1Q8TC90 406 aaPredicted RBP25.75■■□□□ 1.71
PCIF1-201ENST00000372409 CSRNP3Q8WYN3 585 aa25.75■■□□□ 1.71
PCIF1-201ENST00000372409 RUSC2Q8N2Y8 1516 aa25.74■■□□□ 1.71
PCIF1-201ENST00000372409 UBTFP17480 764 aaKnown RBP25.74■■□□□ 1.71
PCIF1-201ENST00000372409 TNIKQ9UKE5 1360 aa25.7■■□□□ 1.71
PCIF1-201ENST00000372409 EEA1Q15075 1411 aa25.7■■□□□ 1.7
PCIF1-201ENST00000372409 WRNQ14191 1432 aaPredicted RBP eCLIP25.69■■□□□ 1.7
PCIF1-201ENST00000372409 PEG3Q9GZU2 1588 aa25.62■■□□□ 1.69
PCIF1-201ENST00000372409 GOLGA3Q08378 1498 aa25.57■■□□□ 1.68
PCIF1-201ENST00000372409 ATAD2BQ9ULI0 1458 aa25.52■■□□□ 1.68
PCIF1-201ENST00000372409 BAZ1BQ9UIG0 1483 aaKnown RBP25.5■■□□□ 1.67
PCIF1-201ENST00000372409 SYNJ1O43426 1573 aa25.5■■□□□ 1.67
PCIF1-201ENST00000372409 CEP164Q9UPV0 1460 aa25.41■■□□□ 1.66
PCIF1-201ENST00000372409 KIF21BO75037 1637 aa25.34■■□□□ 1.65
PCIF1-201ENST00000372409 CLIP1P30622 1438 aa25.31■■□□□ 1.64
PCIF1-201ENST00000372409 RANGAP1P46060 587 aaPredicted RBP25.3■■□□□ 1.64
PCIF1-201ENST00000372409 SCAF1Q9H7N4 1312 aaKnown RBP25.26■■□□□ 1.63
PCIF1-201ENST00000372409 RAPGEF2Q9Y4G8 1499 aa25.23■■□□□ 1.63
PCIF1-201ENST00000372409 DIEXFQ68CQ4 756 aaKnown RBP25.23■■□□□ 1.63
PCIF1-201ENST00000372409 HNRNPUL2Q1KMD3 747 aaKnown RBP25.21■■□□□ 1.63
PCIF1-201ENST00000372409 APLP2Q06481 763 aa25.2■■□□□ 1.62
PCIF1-201ENST00000372409 VPS8Q8N3P4 1428 aa25.17■■□□□ 1.62
PCIF1-201ENST00000372409 TOP2BQ02880 1626 aa25.16■■□□□ 1.62
PCIF1-201ENST00000372409 BIVM-ERCC5R4GMW8 1640 aa25.05■■□□□ 1.6
PCIF1-201ENST00000372409 ACIN1Q9UKV3 1341 aaKnown RBP25.02■■□□□ 1.6
PCIF1-201ENST00000372409 ZNF316A6NFI3 1004 aaPredicted RBP25.01■■□□□ 1.59
PCIF1-201ENST00000372409 NEUROD1Q13562 356 aa25■■□□□ 1.59
PCIF1-201ENST00000372409 NCAPD3P42695 1498 aa24.99■■□□□ 1.59
PCIF1-201ENST00000372409 HMGXB3Q12766 1538 aa24.98■■□□□ 1.59
PCIF1-201ENST00000372409 CUX1P39880 1505 aa24.93■■□□□ 1.58
PCIF1-201ENST00000372409 PRXQ9BXM0 1461 aa24.93■■□□□ 1.58
PCIF1-201ENST00000372409 CENPBP07199 599 aaPredicted RBP24.92■■□□□ 1.58
PCIF1-201ENST00000372409 ERICH3Q5RHP9 1530 aa24.92■■□□□ 1.58
PCIF1-201ENST00000372409 KIF27Q86VH2 1401 aa24.86■■□□□ 1.57
PCIF1-201ENST00000372409 ARAP1Q96P48 1450 aa24.85■■□□□ 1.57
PCIF1-201ENST00000372409 CFTRP13569 1480 aa24.82■■□□□ 1.56
PCIF1-201ENST00000372409 KANK4Q5T7N3 995 aaPredicted RBP24.79■■□□□ 1.56
PCIF1-201ENST00000372409 GTF3C3Q9Y5Q9 886 aa24.77■■□□□ 1.56
PCIF1-201ENST00000372409 PELP1Q8IZL8 1130 aaKnown RBP24.74■■□□□ 1.55
PCIF1-201ENST00000372409 YTHDC1Q96MU7 727 aaKnown RBP24.73■■□□□ 1.55
PCIF1-201ENST00000372409 MIER1Q8N108 512 aa24.68■■□□□ 1.54
PCIF1-201ENST00000372409 CUX2O14529 1486 aa24.63■■□□□ 1.53
PCIF1-201ENST00000372409 ARHGAP35Q9NRY4 1499 aa24.63■■□□□ 1.53
PCIF1-201ENST00000372409 DHX57Q6P158 1386 aaKnown RBP24.61■■□□□ 1.53
PCIF1-201ENST00000372409 PRDM2Q13029 1718 aa24.6■■□□□ 1.53
PCIF1-201ENST00000372409 ITGAEP38570 1179 aa24.57■■□□□ 1.52
PCIF1-201ENST00000372409 CADPSQ9ULU8 1353 aa24.57■■□□□ 1.52
PCIF1-201ENST00000372409 IGF1RP08069 1367 aa24.56■■□□□ 1.52
PCIF1-201ENST00000372409 RRBP1Q9P2E9 1410 aaKnown RBP24.56■■□□□ 1.52
PCIF1-201ENST00000372409 CLSPNQ9HAW4 1339 aa24.56■■□□□ 1.52
PCIF1-201ENST00000372409 CCNB3Q8WWL7 1395 aa24.52■■□□□ 1.52
PCIF1-201ENST00000372409 FGD5Q6ZNL6 1462 aa24.51■■□□□ 1.51
PCIF1-201ENST00000372409 CARMIL1Q5VZK9 1371 aa24.49■■□□□ 1.51
PCIF1-201ENST00000372409 P3H3Q8IVL6 736 aa24.38■■□□□ 1.49
PCIF1-201ENST00000372409 CC2D2AQ9P2K1 1620 aa24.38■■□□□ 1.49
PCIF1-201ENST00000372409 TIAM1Q13009 1591 aa24.37■■□□□ 1.49
PCIF1-201ENST00000372409 ATP1B4Q9UN42 357 aaPredicted RBP24.37■■□□□ 1.49
PCIF1-201ENST00000372409 FANCD2Q9BXW9 1451 aa24.35■■□□□ 1.49
PCIF1-201ENST00000372409 RAB3GAP2Q9H2M9 1393 aa24.31■■□□□ 1.48
PCIF1-201ENST00000372409 LRRC9Q6ZRR7 1453 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms