RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 DCAF8L2P0C7V8 631 aa18.2■□□□□ 0.5
CHD3-201ENST00000330494 SUPT5HO00267 1087 aaKnown RBP17.14■□□□□ 0.33
CHD3-201ENST00000330494 NISCHQ9Y2I1 1504 aa17.13■□□□□ 0.33
CHD3-201ENST00000330494 SHROOM4Q9ULL8 1493 aa17.02■□□□□ 0.32
CHD3-201ENST00000330494 EHMT2Q96KQ7 1210 aa16.88■□□□□ 0.29
CHD3-201ENST00000330494 FAM9AQ8IZU1 332 aaPredicted RBP16.25■□□□□ 0.19
CHD3-201ENST00000330494 TTBK1Q5TCY1 1321 aaPredicted RBP16.24■□□□□ 0.19
CHD3-201ENST00000330494 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.16
CHD3-201ENST00000330494 APLP2Q06481 763 aa16.04■□□□□ 0.16
CHD3-201ENST00000330494 PCGF6Q9BYE7 350 aa15.88■□□□□ 0.13
CHD3-201ENST00000330494 ATP1B4Q9UN42 357 aaPredicted RBP15.83■□□□□ 0.12
CHD3-201ENST00000330494 PELP1Q8IZL8 1130 aaKnown RBP15.82■□□□□ 0.12
CHD3-201ENST00000330494 TRIM41Q8WV44 630 aa15.74■□□□□ 0.11
CHD3-201ENST00000330494 PPARGC1BQ86YN6 1023 aaKnown RBP15.63■□□□□ 0.09
CHD3-201ENST00000330494 UBTFP17480 764 aaKnown RBP15.62■□□□□ 0.09
CHD3-201ENST00000330494 CCER1Q8TC90 406 aaPredicted RBP15.56■□□□□ 0.08
CHD3-201ENST00000330494 MYT1Q01538 1121 aa15.43■□□□□ 0.06
CHD3-201ENST00000330494 ERICH6Q7L0X2 663 aa15.37■□□□□ 0.05
CHD3-201ENST00000330494 YTHDC1Q96MU7 727 aaKnown RBP15.32■□□□□ 0.04
CHD3-201ENST00000330494 ITGAEP38570 1179 aa15.27■□□□□ 0.04
CHD3-201ENST00000330494 LOC105371045A0A1W2PR82 267 aa15.24■□□□□ 0.03
CHD3-201ENST00000330494 ZEB1P37275 1124 aaPredicted RBP15.23■□□□□ 0.03
CHD3-201ENST00000330494 CENPBP07199 599 aaPredicted RBP15.21■□□□□ 0.03
CHD3-201ENST00000330494 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.2■□□□□ 0.02
CHD3-201ENST00000330494 HNRNPUL2Q1KMD3 747 aaKnown RBP15.2■□□□□ 0.02
CHD3-201ENST00000330494 MYT1LQ9UL68 1186 aa15.18■□□□□ 0.02
CHD3-201ENST00000330494 POLR3GLQ9BT43 218 aa15.11■□□□□ 0.01
CHD3-201ENST00000330494 CNGB1Q14028 1251 aaPredicted RBP15.1■□□□□ 0.01
CHD3-201ENST00000330494 CHIC1Q5VXU3 224 aa15.09■□□□□ 0.01
CHD3-201ENST00000330494 PABPN1Q86U42 306 aaKnown RBP eCLIP15.08■□□□□ 0.01
CHD3-201ENST00000330494 ABCC9O60706 1549 aa15.07■□□□□ 0
CHD3-201ENST00000330494 TRIM26Q12899 539 aaPredicted RBP15.04■□□□□ -0
CHD3-201ENST00000330494 NEFLP07196 543 aa14.98□□□□□ -0.01
CHD3-201ENST00000330494 HRCP23327 699 aa14.85□□□□□ -0.03
CHD3-201ENST00000330494 SLC4A1APQ9BWU0 796 aaKnown RBP14.83□□□□□ -0.04
CHD3-201ENST00000330494 FAM50AQ14320 339 aaKnown RBP14.8□□□□□ -0.04
CHD3-201ENST00000330494 FBLN2P98095 1184 aa14.71□□□□□ -0.06
CHD3-201ENST00000330494 NEUROD1Q13562 356 aa14.68□□□□□ -0.06
CHD3-201ENST00000330494 TRIM52Q96A61 297 aa14.68□□□□□ -0.06
CHD3-201ENST00000330494 ARID3CA6NKF2 412 aa14.65□□□□□ -0.06
CHD3-201ENST00000330494 P3H3Q8IVL6 736 aa14.61□□□□□ -0.07
CHD3-201ENST00000330494 ZNF326Q5BKZ1 582 aaKnown RBP14.57□□□□□ -0.08
CHD3-201ENST00000330494 DAXXQ9UER7 740 aaPredicted RBP14.56□□□□□ -0.08
CHD3-201ENST00000330494 DIEXFQ68CQ4 756 aaKnown RBP14.56□□□□□ -0.08
CHD3-201ENST00000330494 SCRIBQ14160 1630 aa14.52□□□□□ -0.09
CHD3-201ENST00000330494 BCANQ96GW7 911 aa14.42□□□□□ -0.1
CHD3-201ENST00000330494 CLSPNQ9HAW4 1339 aa14.4□□□□□ -0.1
CHD3-201ENST00000330494 ZNF777Q9ULD5 760 aaPredicted RBP14.38□□□□□ -0.11
CHD3-201ENST00000330494 BCL11AQ9H165 835 aa14.37□□□□□ -0.11
CHD3-201ENST00000330494 SLC24A1O60721 1099 aa14.33□□□□□ -0.12
CHD3-201ENST00000330494 PLPPR3Q6T4P5 718 aa14.33□□□□□ -0.12
CHD3-201ENST00000330494 CSRNP3Q8WYN3 585 aa14.29□□□□□ -0.12
CHD3-201ENST00000330494 RTL5Q5HYW3 569 aaPredicted RBP14.29□□□□□ -0.12
CHD3-201ENST00000330494 ANP32CO43423 234 aa14.28□□□□□ -0.12
CHD3-201ENST00000330494 ZNF316A6NFI3 1004 aaPredicted RBP14.26□□□□□ -0.13
CHD3-201ENST00000330494 GTF3C3Q9Y5Q9 886 aa14.22□□□□□ -0.13
CHD3-201ENST00000330494 CHGAP10645 457 aaKnown RBP14.16□□□□□ -0.14
CHD3-201ENST00000330494 CANXP27824 592 aaKnown RBP14.13□□□□□ -0.15
CHD3-201ENST00000330494 CHIC2Q9UKJ5 165 aa14.12□□□□□ -0.15
CHD3-201ENST00000330494 ZCCHC6Q5VYS8 1495 aaKnown RBP14.12□□□□□ -0.15
CHD3-201ENST00000330494 SENP3Q9H4L4 574 aaPredicted RBP14.11□□□□□ -0.15
CHD3-201ENST00000330494 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.09□□□□□ -0.155e-6■■□□□ 13.6
CHD3-201ENST00000330494 ZBTB47Q9UFB7 747 aaPredicted RBP14.07□□□□□ -0.16
CHD3-201ENST00000330494 STAG3Q9UJ98 1225 aa14.06□□□□□ -0.16
CHD3-201ENST00000330494 CDK11AQ9UQ88 783 aaPredicted RBP14.06□□□□□ -0.16
CHD3-201ENST00000330494 ESF1Q9H501 851 aaKnown RBP14.05□□□□□ -0.16
CHD3-201ENST00000330494 SALL2Q9Y467 1007 aaPredicted RBP14.05□□□□□ -0.16
CHD3-201ENST00000330494 CCDC180Q9P1Z9 1646 aa14.01□□□□□ -0.17
CHD3-201ENST00000330494 NEFMP07197 916 aa14.01□□□□□ -0.17
CHD3-201ENST00000330494 DDX10Q13206 875 aaKnown RBP13.99□□□□□ -0.17
CHD3-201ENST00000330494 TONSLQ96HA7 1378 aa13.99□□□□□ -0.17
CHD3-201ENST00000330494 HIRIP3Q9BW71 556 aaPredicted RBP13.98□□□□□ -0.17
CHD3-201ENST00000330494 NPM1P06748 294 aaKnown RBP eCLIP13.98□□□□□ -0.17
CHD3-201ENST00000330494 KDM2AQ9Y2K7 1162 aa13.98□□□□□ -0.17
CHD3-201ENST00000330494 FAM9BQ8IZU0 186 aa13.97□□□□□ -0.17
CHD3-201ENST00000330494 EIF5BO60841 1220 aaKnown RBP13.97□□□□□ -0.17
CHD3-201ENST00000330494 NPM2Q86SE8 214 aaKnown RBP13.96□□□□□ -0.17
CHD3-201ENST00000330494 CHMP7Q8WUX9 453 aaPredicted RBP13.94□□□□□ -0.18
CHD3-201ENST00000330494 PLEKHG5O94827 1062 aa13.94□□□□□ -0.18
CHD3-201ENST00000330494 KCNH8Q96L42 1107 aa13.9□□□□□ -0.18
CHD3-201ENST00000330494 ACIN1Q9UKV3 1341 aaKnown RBP13.9□□□□□ -0.18
CHD3-201ENST00000330494 HNRNPUQ00839 825 aaKnown RBP eCLIP13.9□□□□□ -0.19
CHD3-201ENST00000330494 FKBP8Q14318 412 aa13.89□□□□□ -0.19
CHD3-201ENST00000330494 RB1CC1Q8TDY2 1594 aa13.88□□□□□ -0.19
CHD3-201ENST00000330494 RRP7BPQ9NSQ0 103 aa13.88□□□□□ -0.19
CHD3-201ENST00000330494 MYO15BQ96JP2 1530 aa13.88□□□□□ -0.19
CHD3-201ENST00000330494 MTUS2Q5JR59 1369 aa13.87□□□□□ -0.19
CHD3-201ENST00000330494 SCAF1Q9H7N4 1312 aaKnown RBP13.86□□□□□ -0.19
CHD3-201ENST00000330494 SENP3-EIF4A1A0A087X0R7 540 aa13.85□□□□□ -0.19
CHD3-201ENST00000330494 TSPY4P0CV99 314 aa13.82□□□□□ -0.2
CHD3-201ENST00000330494 TSPY10P0CW01 314 aa13.82□□□□□ -0.2
CHD3-201ENST00000330494 DCAF1Q9Y4B6 1507 aa13.82□□□□□ -0.2
CHD3-201ENST00000330494 CLIP1P30622 1438 aa13.8□□□□□ -0.2
CHD3-201ENST00000330494 ZBTB7CA1YPR0 619 aa13.8□□□□□ -0.2
CHD3-201ENST00000330494 IRX6P78412 446 aaPredicted RBP13.79□□□□□ -0.2
CHD3-201ENST00000330494 TMC1Q8TDI8 760 aa13.79□□□□□ -0.2
CHD3-201ENST00000330494 ANP32AP39687 249 aaKnown RBP13.77□□□□□ -0.21
CHD3-201ENST00000330494 A0A0G2JS52 829 aa13.77□□□□□ -0.21
CHD3-201ENST00000330494 RGL3Q3MIN7 710 aa13.76□□□□□ -0.21
CHD3-201ENST00000330494 RSF1Q96T23 1441 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms