RNA–Protein interactions for RNA: ENST00000329397.5

PTP4A3-201, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTP4A3, Length 2,785 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-201ENST00000329397 NISCHQ9Y2I1 1504 aa35.31■■■■□ 3.24
PTP4A3-201ENST00000329397 SHROOM4Q9ULL8 1493 aa30.76■■■□□ 2.52
PTP4A3-201ENST00000329397 SUPT5HO00267 1087 aaKnown RBP30.22■■■□□ 2.43
PTP4A3-201ENST00000329397 ZCCHC6Q5VYS8 1495 aaKnown RBP29.88■■■□□ 2.37
PTP4A3-201ENST00000329397 DCAF8L2P0C7V8 631 aa29.73■■■□□ 2.35
PTP4A3-201ENST00000329397 CCDC180Q9P1Z9 1646 aa29.72■■■□□ 2.35
PTP4A3-201ENST00000329397 MYO15BQ96JP2 1530 aa29.34■■■□□ 2.29
PTP4A3-201ENST00000329397 CHIC1Q5VXU3 224 aa29.28■■■□□ 2.28
PTP4A3-201ENST00000329397 PCGF6Q9BYE7 350 aa28.78■■■□□ 2.2
PTP4A3-201ENST00000329397 HRCP23327 699 aa28.73■■■□□ 2.19
PTP4A3-201ENST00000329397 DCAF1Q9Y4B6 1507 aa28.71■■■□□ 2.19
PTP4A3-201ENST00000329397 LOC105371045A0A1W2PR82 267 aa28.64■■■□□ 2.18
PTP4A3-201ENST00000329397 PPARGC1BQ86YN6 1023 aaKnown RBP28.43■■■□□ 2.14
PTP4A3-201ENST00000329397 SCRIBQ14160 1630 aa28.28■■■□□ 2.12
PTP4A3-201ENST00000329397 ABCC9O60706 1549 aa28.25■■■□□ 2.11
PTP4A3-201ENST00000329397 RSF1Q96T23 1441 aaPredicted RBP28.11■■■□□ 2.09
PTP4A3-201ENST00000329397 FAM9AQ8IZU1 332 aaPredicted RBP28.01■■■□□ 2.07
PTP4A3-201ENST00000329397 EHMT2Q96KQ7 1210 aa27.98■■■□□ 2.07
PTP4A3-201ENST00000329397 RB1CC1Q8TDY2 1594 aa27.96■■■□□ 2.07
PTP4A3-201ENST00000329397 TRIM41Q8WV44 630 aa27.95■■■□□ 2.06
PTP4A3-201ENST00000329397 TRIM26Q12899 539 aaPredicted RBP27.93■■■□□ 2.06
PTP4A3-201ENST00000329397 CECR2Q9BXF3 1484 aa27.74■■■□□ 2.03
PTP4A3-201ENST00000329397 MROH2BQ7Z745 1585 aa27.59■■■□□ 2.01
PTP4A3-201ENST00000329397 WIZO95785 1651 aa27.5■■□□□ 1.99
PTP4A3-201ENST00000329397 NACADO15069 1562 aa27.47■■□□□ 1.99
PTP4A3-201ENST00000329397 PELP1Q8IZL8 1130 aaKnown RBP27.31■■□□□ 1.96
PTP4A3-201ENST00000329397 ZEB1P37275 1124 aaPredicted RBP27.24■■□□□ 1.95
PTP4A3-201ENST00000329397 BAZ1AQ9NRL2 1556 aaPredicted RBP27.15■■□□□ 1.94
PTP4A3-201ENST00000329397 TTBK1Q5TCY1 1321 aaPredicted RBP27.1■■□□□ 1.93
PTP4A3-201ENST00000329397 ABCC8Q09428 1581 aa27.05■■□□□ 1.92
PTP4A3-201ENST00000329397 EIF4G1Q04637 1599 aaKnown RBP27.04■■□□□ 1.92
PTP4A3-201ENST00000329397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.03■■□□□ 1.92
PTP4A3-201ENST00000329397 CCDC88BA6NC98 1476 aa26.95■■□□□ 1.9
PTP4A3-201ENST00000329397 TOP2AP11388 1531 aaKnown RBP26.87■■□□□ 1.89
PTP4A3-201ENST00000329397 CCER1Q8TC90 406 aaPredicted RBP26.86■■□□□ 1.89
PTP4A3-201ENST00000329397 SMARCA4P51532 1647 aa26.86■■□□□ 1.89
PTP4A3-201ENST00000329397 SOGA1O94964 1423 aa26.82■■□□□ 1.88
PTP4A3-201ENST00000329397 SMARCA2P51531 1590 aa26.81■■□□□ 1.88
PTP4A3-201ENST00000329397 UNC13AQ9UPW8 1703 aa26.81■■□□□ 1.88
PTP4A3-201ENST00000329397 MYT1Q01538 1121 aa26.79■■□□□ 1.88
PTP4A3-201ENST00000329397 PABPN1Q86U42 306 aaKnown RBP eCLIP26.77■■□□□ 1.88
PTP4A3-201ENST00000329397 SCAF1Q9H7N4 1312 aaKnown RBP26.74■■□□□ 1.87
PTP4A3-201ENST00000329397 RUSC2Q8N2Y8 1516 aa26.72■■□□□ 1.87
PTP4A3-201ENST00000329397 CEP162Q5TB80 1403 aa26.71■■□□□ 1.87
PTP4A3-201ENST00000329397 UBTFP17480 764 aaKnown RBP26.66■■□□□ 1.86
PTP4A3-201ENST00000329397 CSRNP3Q8WYN3 585 aa26.58■■□□□ 1.85
PTP4A3-201ENST00000329397 WRNQ14191 1432 aaPredicted RBP eCLIP26.54■■□□□ 1.845e-7■■□□□ 14.4
PTP4A3-201ENST00000329397 TNIKQ9UKE5 1360 aa26.52■■□□□ 1.84
PTP4A3-201ENST00000329397 BICRAQ9NZM4 1560 aa26.42■■□□□ 1.82
PTP4A3-201ENST00000329397 DIEXFQ68CQ4 756 aaKnown RBP26.41■■□□□ 1.82
PTP4A3-201ENST00000329397 NEUROD1Q13562 356 aa26.37■■□□□ 1.81
PTP4A3-201ENST00000329397 RANGAP1P46060 587 aaPredicted RBP26.37■■□□□ 1.81
PTP4A3-201ENST00000329397 GOLGA3Q08378 1498 aa26.36■■□□□ 1.81
PTP4A3-201ENST00000329397 EEA1Q15075 1411 aa26.36■■□□□ 1.81
PTP4A3-201ENST00000329397 SYNJ1O43426 1573 aa26.32■■□□□ 1.8
PTP4A3-201ENST00000329397 HNRNPUL2Q1KMD3 747 aaKnown RBP26.3■■□□□ 1.8
PTP4A3-201ENST00000329397 ACIN1Q9UKV3 1341 aaKnown RBP26.29■■□□□ 1.8
PTP4A3-201ENST00000329397 CLIP1P30622 1438 aa26.16■■□□□ 1.78
PTP4A3-201ENST00000329397 CEP164Q9UPV0 1460 aa26.16■■□□□ 1.78
PTP4A3-201ENST00000329397 PEG3Q9GZU2 1588 aa26.16■■□□□ 1.78
PTP4A3-201ENST00000329397 ATAD2BQ9ULI0 1458 aa26.14■■□□□ 1.77
PTP4A3-201ENST00000329397 GTF3C3Q9Y5Q9 886 aa26.12■■□□□ 1.77
PTP4A3-201ENST00000329397 BAZ1BQ9UIG0 1483 aaKnown RBP26.11■■□□□ 1.77
PTP4A3-201ENST00000329397 RAPGEF2Q9Y4G8 1499 aa26.11■■□□□ 1.77
PTP4A3-201ENST00000329397 ZNF316A6NFI3 1004 aaPredicted RBP26.08■■□□□ 1.77
PTP4A3-201ENST00000329397 KIF21BO75037 1637 aa26.07■■□□□ 1.76
PTP4A3-201ENST00000329397 YTHDC1Q96MU7 727 aaKnown RBP26.06■■□□□ 1.76
PTP4A3-201ENST00000329397 CENPBP07199 599 aaPredicted RBP26.03■■□□□ 1.76
PTP4A3-201ENST00000329397 VPS8Q8N3P4 1428 aa26■■□□□ 1.75
PTP4A3-201ENST00000329397 APLP2Q06481 763 aa26■■□□□ 1.75
PTP4A3-201ENST00000329397 MIER1Q8N108 512 aa25.89■■□□□ 1.74
PTP4A3-201ENST00000329397 TOP2BQ02880 1626 aa25.83■■□□□ 1.73
PTP4A3-201ENST00000329397 KANK4Q5T7N3 995 aaPredicted RBP25.76■■□□□ 1.71
PTP4A3-201ENST00000329397 ARAP1Q96P48 1450 aa25.69■■□□□ 1.7
PTP4A3-201ENST00000329397 BIVM-ERCC5R4GMW8 1640 aa25.69■■□□□ 1.7
PTP4A3-201ENST00000329397 PRKCSHP14314 528 aaPredicted RBP25.66■■□□□ 1.7
PTP4A3-201ENST00000329397 PRXQ9BXM0 1461 aa25.66■■□□□ 1.7
PTP4A3-201ENST00000329397 CUX1P39880 1505 aa25.64■■□□□ 1.7
PTP4A3-201ENST00000329397 ITGAEP38570 1179 aa25.6■■□□□ 1.69
PTP4A3-201ENST00000329397 DHX57Q6P158 1386 aaKnown RBP25.59■■□□□ 1.69
PTP4A3-201ENST00000329397 ERICH3Q5RHP9 1530 aa25.58■■□□□ 1.69
PTP4A3-201ENST00000329397 KIF27Q86VH2 1401 aa25.52■■□□□ 1.68
PTP4A3-201ENST00000329397 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
PTP4A3-201ENST00000329397 HMGXB3Q12766 1538 aa25.45■■□□□ 1.66
PTP4A3-201ENST00000329397 ARHGAP35Q9NRY4 1499 aa25.44■■□□□ 1.66
PTP4A3-201ENST00000329397 CFTRP13569 1480 aa25.4■■□□□ 1.66
PTP4A3-201ENST00000329397 RRBP1Q9P2E9 1410 aaKnown RBP25.38■■□□□ 1.65
PTP4A3-201ENST00000329397 CCNB3Q8WWL7 1395 aa25.36■■□□□ 1.65
PTP4A3-201ENST00000329397 CUX2O14529 1486 aa25.34■■□□□ 1.65
PTP4A3-201ENST00000329397 CLSPNQ9HAW4 1339 aa25.34■■□□□ 1.65
PTP4A3-201ENST00000329397 P3H3Q8IVL6 736 aa25.28■■□□□ 1.64
PTP4A3-201ENST00000329397 IGF1RP08069 1367 aa25.27■■□□□ 1.64
PTP4A3-201ENST00000329397 ATP1B4Q9UN42 357 aaPredicted RBP25.24■■□□□ 1.63
PTP4A3-201ENST00000329397 RAB3GAP2Q9H2M9 1393 aa25.23■■□□□ 1.63
PTP4A3-201ENST00000329397 CARMIL1Q5VZK9 1371 aa25.18■■□□□ 1.62
PTP4A3-201ENST00000329397 FAM50AQ14320 339 aaKnown RBP25.17■■□□□ 1.62
PTP4A3-201ENST00000329397 FGD5Q6ZNL6 1462 aa25.17■■□□□ 1.62
PTP4A3-201ENST00000329397 KCNH8Q96L42 1107 aa25.16■■□□□ 1.62
PTP4A3-201ENST00000329397 TIAM1Q13009 1591 aa25.14■■□□□ 1.62
PTP4A3-201ENST00000329397 PHLDB1Q86UU1 1377 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms