RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 DCAF8L2P0C7V8 631 aa24.03■■□□□ 1.44
PRKCB-201ENST00000303531 SUPT5HO00267 1087 aaKnown RBP23.01■■□□□ 1.27
PRKCB-201ENST00000303531 NISCHQ9Y2I1 1504 aa22.85■■□□□ 1.25
PRKCB-201ENST00000303531 SHROOM4Q9ULL8 1493 aa22.58■■□□□ 1.2
PRKCB-201ENST00000303531 EHMT2Q96KQ7 1210 aa22.33■■□□□ 1.16
PRKCB-201ENST00000303531 PELP1Q8IZL8 1130 aaKnown RBP21.94■■□□□ 1.1
PRKCB-201ENST00000303531 APLP2Q06481 763 aa21.83■■□□□ 1.09
PRKCB-201ENST00000303531 FAM9AQ8IZU1 332 aaPredicted RBP21.73■■□□□ 1.07
PRKCB-201ENST00000303531 PCGF6Q9BYE7 350 aa21.66■■□□□ 1.06
PRKCB-201ENST00000303531 TTBK1Q5TCY1 1321 aaPredicted RBP21.61■■□□□ 1.05
PRKCB-201ENST00000303531 RANGAP1P46060 587 aaPredicted RBP21.29■■□□□ 1
PRKCB-201ENST00000303531 TRIM41Q8WV44 630 aa21.27■■□□□ 1
PRKCB-201ENST00000303531 CENPBP07199 599 aaPredicted RBP21.26■□□□□ 0.99
PRKCB-201ENST00000303531 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
PRKCB-201ENST00000303531 CCER1Q8TC90 406 aaPredicted RBP21.24■□□□□ 0.99
PRKCB-201ENST00000303531 ERICH6Q7L0X2 663 aa21.07■□□□□ 0.96
PRKCB-201ENST00000303531 ATP1B4Q9UN42 357 aaPredicted RBP21.06■□□□□ 0.96
PRKCB-201ENST00000303531 UBTFP17480 764 aaKnown RBP21.03■□□□□ 0.96
PRKCB-201ENST00000303531 YTHDC1Q96MU7 727 aaKnown RBP20.87■□□□□ 0.93
PRKCB-201ENST00000303531 PPARGC1BQ86YN6 1023 aaKnown RBP20.81■□□□□ 0.92
PRKCB-201ENST00000303531 NEFLP07196 543 aa20.78■□□□□ 0.92
PRKCB-201ENST00000303531 TRIM26Q12899 539 aaPredicted RBP20.68■□□□□ 0.9
PRKCB-201ENST00000303531 HRCP23327 699 aa20.54■□□□□ 0.88
PRKCB-201ENST00000303531 MYT1Q01538 1121 aa20.48■□□□□ 0.87
PRKCB-201ENST00000303531 LOC105371045A0A1W2PR82 267 aa20.45■□□□□ 0.86
PRKCB-201ENST00000303531 ITGAEP38570 1179 aa20.43■□□□□ 0.86
PRKCB-201ENST00000303531 CHIC1Q5VXU3 224 aa20.38■□□□□ 0.85
PRKCB-201ENST00000303531 HNRNPUL2Q1KMD3 747 aaKnown RBP20.31■□□□□ 0.84
PRKCB-201ENST00000303531 POLR3GLQ9BT43 218 aa20.28■□□□□ 0.84
PRKCB-201ENST00000303531 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.25■□□□□ 0.83
PRKCB-201ENST00000303531 DAXXQ9UER7 740 aaPredicted RBP20.16■□□□□ 0.82
PRKCB-201ENST00000303531 MYT1LQ9UL68 1186 aa20.16■□□□□ 0.82
PRKCB-201ENST00000303531 CNGB1Q14028 1251 aaPredicted RBP20.12■□□□□ 0.81
PRKCB-201ENST00000303531 DIEXFQ68CQ4 756 aaKnown RBP20.03■□□□□ 0.8
PRKCB-201ENST00000303531 FAM50AQ14320 339 aaKnown RBP19.87■□□□□ 0.77
PRKCB-201ENST00000303531 SLC4A1APQ9BWU0 796 aaKnown RBP19.83■□□□□ 0.77
PRKCB-201ENST00000303531 NEUROD1Q13562 356 aa19.76■□□□□ 0.75
PRKCB-201ENST00000303531 TRIM52Q96A61 297 aa19.75■□□□□ 0.75
PRKCB-201ENST00000303531 RTL5Q5HYW3 569 aaPredicted RBP19.74■□□□□ 0.75
PRKCB-201ENST00000303531 CLSPNQ9HAW4 1339 aa19.73■□□□□ 0.75
PRKCB-201ENST00000303531 ZNF316A6NFI3 1004 aaPredicted RBP19.72■□□□□ 0.75
PRKCB-201ENST00000303531 PABPN1Q86U42 306 aaKnown RBP eCLIP19.68■□□□□ 0.74
PRKCB-201ENST00000303531 GTF3C3Q9Y5Q9 886 aa19.67■□□□□ 0.74
PRKCB-201ENST00000303531 BCANQ96GW7 911 aa19.66■□□□□ 0.74
PRKCB-201ENST00000303531 ABCC9O60706 1549 aa19.63■□□□□ 0.73
PRKCB-201ENST00000303531 ANP32CO43423 234 aa19.59■□□□□ 0.73
PRKCB-201ENST00000303531 ZNF326Q5BKZ1 582 aaKnown RBP19.56■□□□□ 0.72
PRKCB-201ENST00000303531 CDK11AQ9UQ88 783 aaPredicted RBP19.46■□□□□ 0.71
PRKCB-201ENST00000303531 ACIN1Q9UKV3 1341 aaKnown RBP19.36■□□□□ 0.69
PRKCB-201ENST00000303531 FBLN2P98095 1184 aa19.35■□□□□ 0.69
PRKCB-201ENST00000303531 P3H3Q8IVL6 736 aa19.35■□□□□ 0.69
PRKCB-201ENST00000303531 CSRNP3Q8WYN3 585 aa19.34■□□□□ 0.69
PRKCB-201ENST00000303531 ZBTB47Q9UFB7 747 aaPredicted RBP19.29■□□□□ 0.68
PRKCB-201ENST00000303531 ARID3CA6NKF2 412 aa19.29■□□□□ 0.68
PRKCB-201ENST00000303531 CANXP27824 592 aaKnown RBP19.27■□□□□ 0.68
PRKCB-201ENST00000303531 BCL11AQ9H165 835 aa19.2■□□□□ 0.66
PRKCB-201ENST00000303531 ZNF777Q9ULD5 760 aaPredicted RBP19.16■□□□□ 0.66
PRKCB-201ENST00000303531 ANP32AP39687 249 aaKnown RBP19.14■□□□□ 0.66
PRKCB-201ENST00000303531 SLC24A1O60721 1099 aa19.14■□□□□ 0.65
PRKCB-201ENST00000303531 NEFMP07197 916 aa19.12■□□□□ 0.65
PRKCB-201ENST00000303531 NPM2Q86SE8 214 aaKnown RBP19.08■□□□□ 0.65
PRKCB-201ENST00000303531 FKBP8Q14318 412 aa19.08■□□□□ 0.65
PRKCB-201ENST00000303531 TONSLQ96HA7 1378 aa19.07■□□□□ 0.64
PRKCB-201ENST00000303531 DCAF1Q9Y4B6 1507 aa19.07■□□□□ 0.64
PRKCB-201ENST00000303531 SCRIBQ14160 1630 aa19.03■□□□□ 0.64
PRKCB-201ENST00000303531 HNRNPUQ00839 825 aaKnown RBP eCLIP19.01■□□□□ 0.639e-7■□□□□ 11
PRKCB-201ENST00000303531 DDX10Q13206 875 aaKnown RBP19■□□□□ 0.63
PRKCB-201ENST00000303531 FAM9BQ8IZU0 186 aa18.96■□□□□ 0.63
PRKCB-201ENST00000303531 ZCCHC6Q5VYS8 1495 aaKnown RBP18.91■□□□□ 0.62
PRKCB-201ENST00000303531 SALL2Q9Y467 1007 aaPredicted RBP18.87■□□□□ 0.61
PRKCB-201ENST00000303531 CHGAP10645 457 aaKnown RBP18.87■□□□□ 0.61
PRKCB-201ENST00000303531 CHIC2Q9UKJ5 165 aa18.86■□□□□ 0.61
PRKCB-201ENST00000303531 HSP90AA1P07900 732 aaKnown RBP18.81■□□□□ 0.6
PRKCB-201ENST00000303531 TMC1Q8TDI8 760 aa18.8■□□□□ 0.6
PRKCB-201ENST00000303531 UPF2Q9HAU5 1272 aaKnown RBP18.8■□□□□ 0.6
PRKCB-201ENST00000303531 CCDC136Q96JN2 1154 aa18.79■□□□□ 0.6
PRKCB-201ENST00000303531 ESF1Q9H501 851 aaKnown RBP18.77■□□□□ 0.6
PRKCB-201ENST00000303531 STAG3Q9UJ98 1225 aa18.77■□□□□ 0.6
PRKCB-201ENST00000303531 ANP32BQ92688 251 aaKnown RBP18.77■□□□□ 0.59
PRKCB-201ENST00000303531 MIER1Q8N108 512 aa18.76■□□□□ 0.59
PRKCB-201ENST00000303531 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.75■□□□□ 0.592e-7■□□□□ 8.8
PRKCB-201ENST00000303531 MRS2Q9HD23 443 aa18.75■□□□□ 0.59
PRKCB-201ENST00000303531 EIF5BO60841 1220 aaKnown RBP18.73■□□□□ 0.59
PRKCB-201ENST00000303531 SCAF1Q9H7N4 1312 aaKnown RBP18.72■□□□□ 0.59
PRKCB-201ENST00000303531 HIRIP3Q9BW71 556 aaPredicted RBP18.71■□□□□ 0.59
PRKCB-201ENST00000303531 KDM2AQ9Y2K7 1162 aa18.7■□□□□ 0.58
PRKCB-201ENST00000303531 MTUS2Q5JR59 1369 aa18.7■□□□□ 0.58
PRKCB-201ENST00000303531 CLIP1P30622 1438 aa18.7■□□□□ 0.58
PRKCB-201ENST00000303531 NBR1Q14596 966 aa18.7■□□□□ 0.58
PRKCB-201ENST00000303531 WDR43Q15061 677 aaKnown RBP eCLIP18.69■□□□□ 0.58
PRKCB-201ENST00000303531 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.69■□□□□ 0.58
PRKCB-201ENST00000303531 IRX6P78412 446 aaPredicted RBP18.68■□□□□ 0.58
PRKCB-201ENST00000303531 TSPY4P0CV99 314 aa18.65■□□□□ 0.58
PRKCB-201ENST00000303531 TSPY10P0CW01 314 aa18.65■□□□□ 0.58
PRKCB-201ENST00000303531 NPM1P06748 294 aaKnown RBP eCLIP18.63■□□□□ 0.57
PRKCB-201ENST00000303531 MYO15BQ96JP2 1530 aa18.63■□□□□ 0.57
PRKCB-201ENST00000303531 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
PRKCB-201ENST00000303531 EIF4G2P78344 907 aaKnown RBP eCLIP18.6■□□□□ 0.572e-7■■■■□ 19.3
PRKCB-201ENST00000303531 RRP7BPQ9NSQ0 103 aa18.58■□□□□ 0.57
PRKCB-201ENST00000303531 ARXQ96QS3 562 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms