RNA–Protein interactions for RNA: ENST00000301732.9

ABCA3-201, Transcript of ATP binding cassette subfamily A member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ABCA3, Length 6,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-201ENST00000301732 DCAF8L2P0C7V8 631 aa21.34■■□□□ 1.01
ABCA3-201ENST00000301732 EHMT2Q96KQ7 1210 aa20.7■□□□□ 0.9
ABCA3-201ENST00000301732 SUPT5HO00267 1087 aaKnown RBP20.41■□□□□ 0.86
ABCA3-201ENST00000301732 TTBK1Q5TCY1 1321 aaPredicted RBP19.97■□□□□ 0.79
ABCA3-201ENST00000301732 SHROOM4Q9ULL8 1493 aa19.9■□□□□ 0.78
ABCA3-201ENST00000301732 PELP1Q8IZL8 1130 aaKnown RBP19.74■□□□□ 0.75
ABCA3-201ENST00000301732 PCGF6Q9BYE7 350 aa19.56■□□□□ 0.72
ABCA3-201ENST00000301732 FAM9AQ8IZU1 332 aaPredicted RBP19.53■□□□□ 0.72
ABCA3-201ENST00000301732 ERICH6Q7L0X2 663 aa19.5■□□□□ 0.71
ABCA3-201ENST00000301732 RANGAP1P46060 587 aaPredicted RBP19.41■□□□□ 0.7
ABCA3-201ENST00000301732 MYT1Q01538 1121 aa19.4■□□□□ 0.7
ABCA3-201ENST00000301732 YTHDC1Q96MU7 727 aaKnown RBP19.38■□□□□ 0.69
ABCA3-201ENST00000301732 APLP2Q06481 763 aa19.19■□□□□ 0.66
ABCA3-201ENST00000301732 PPARGC1BQ86YN6 1023 aaKnown RBP19.05■□□□□ 0.64
ABCA3-201ENST00000301732 CENPBP07199 599 aaPredicted RBP19.04■□□□□ 0.64
ABCA3-201ENST00000301732 CCER1Q8TC90 406 aaPredicted RBP19.02■□□□□ 0.63
ABCA3-201ENST00000301732 ATP1B4Q9UN42 357 aaPredicted RBP18.96■□□□□ 0.63
ABCA3-201ENST00000301732 CNGB1Q14028 1251 aaPredicted RBP18.8■□□□□ 0.6
ABCA3-201ENST00000301732 NEFLP07196 543 aa18.72■□□□□ 0.59
ABCA3-201ENST00000301732 POLR3GLQ9BT43 218 aa18.58■□□□□ 0.56
ABCA3-201ENST00000301732 UBTFP17480 764 aaKnown RBP18.47■□□□□ 0.55
ABCA3-201ENST00000301732 ZEB1P37275 1124 aaPredicted RBP18.45■□□□□ 0.54
ABCA3-201ENST00000301732 TRIM41Q8WV44 630 aa18.45■□□□□ 0.54
ABCA3-201ENST00000301732 ITGAEP38570 1179 aa18.44■□□□□ 0.54
ABCA3-201ENST00000301732 NISCHQ9Y2I1 1504 aa18.39■□□□□ 0.53
ABCA3-201ENST00000301732 DAXXQ9UER7 740 aaPredicted RBP18.38■□□□□ 0.53
ABCA3-201ENST00000301732 CHIC1Q5VXU3 224 aa18.31■□□□□ 0.52
ABCA3-201ENST00000301732 HRCP23327 699 aa18.28■□□□□ 0.52
ABCA3-201ENST00000301732 BCANQ96GW7 911 aa18.24■□□□□ 0.51
ABCA3-201ENST00000301732 LOC105371045A0A1W2PR82 267 aa18.15■□□□□ 0.5
ABCA3-201ENST00000301732 HNRNPUL2Q1KMD3 747 aaKnown RBP18.15■□□□□ 0.5
ABCA3-201ENST00000301732 BCL11AQ9H165 835 aa18.09■□□□□ 0.49
ABCA3-201ENST00000301732 SLC4A1APQ9BWU0 796 aaKnown RBP18.08■□□□□ 0.48
ABCA3-201ENST00000301732 MYT1LQ9UL68 1186 aa18.08■□□□□ 0.48
ABCA3-201ENST00000301732 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.04■□□□□ 0.48
ABCA3-201ENST00000301732 CLSPNQ9HAW4 1339 aa18.02■□□□□ 0.47
ABCA3-201ENST00000301732 TRIM26Q12899 539 aaPredicted RBP18.01■□□□□ 0.47
ABCA3-201ENST00000301732 RTL5Q5HYW3 569 aaPredicted RBP18.01■□□□□ 0.47
ABCA3-201ENST00000301732 ZNF316A6NFI3 1004 aaPredicted RBP18.01■□□□□ 0.47
ABCA3-201ENST00000301732 GTF3C3Q9Y5Q9 886 aa17.91■□□□□ 0.46
ABCA3-201ENST00000301732 DIEXFQ68CQ4 756 aaKnown RBP17.88■□□□□ 0.45
ABCA3-201ENST00000301732 NEUROD1Q13562 356 aa17.73■□□□□ 0.43
ABCA3-201ENST00000301732 EIF5BO60841 1220 aaKnown RBP17.72■□□□□ 0.43
ABCA3-201ENST00000301732 NPM2Q86SE8 214 aaKnown RBP17.64■□□□□ 0.41
ABCA3-201ENST00000301732 ZNF326Q5BKZ1 582 aaKnown RBP17.61■□□□□ 0.41
ABCA3-201ENST00000301732 SLC24A1O60721 1099 aa17.59■□□□□ 0.41
ABCA3-201ENST00000301732 FAM50AQ14320 339 aaKnown RBP17.56■□□□□ 0.4
ABCA3-201ENST00000301732 ARXQ96QS3 562 aa17.53■□□□□ 0.4
ABCA3-201ENST00000301732 CDK11AQ9UQ88 783 aaPredicted RBP17.51■□□□□ 0.39
ABCA3-201ENST00000301732 TRIM52Q96A61 297 aa17.49■□□□□ 0.39
ABCA3-201ENST00000301732 NBR1Q14596 966 aa17.41■□□□□ 0.38
ABCA3-201ENST00000301732 CANXP27824 592 aaKnown RBP17.35■□□□□ 0.37
ABCA3-201ENST00000301732 ANP32CO43423 234 aa17.31■□□□□ 0.36
ABCA3-201ENST00000301732 ARID3CA6NKF2 412 aa17.3■□□□□ 0.36
ABCA3-201ENST00000301732 SALL2Q9Y467 1007 aaPredicted RBP17.3■□□□□ 0.36
ABCA3-201ENST00000301732 ZBTB47Q9UFB7 747 aaPredicted RBP17.28■□□□□ 0.36
ABCA3-201ENST00000301732 ACIN1Q9UKV3 1341 aaKnown RBP17.27■□□□□ 0.36
ABCA3-201ENST00000301732 FKBP8Q14318 412 aa17.27■□□□□ 0.36
ABCA3-201ENST00000301732 ANP32AP39687 249 aaKnown RBP17.22■□□□□ 0.35
ABCA3-201ENST00000301732 IRX6P78412 446 aaPredicted RBP17.19■□□□□ 0.34
ABCA3-201ENST00000301732 SENP3-EIF4A1A0A087X0R7 540 aa17.18■□□□□ 0.34
ABCA3-201ENST00000301732 P3H3Q8IVL6 736 aa17.08■□□□□ 0.33
ABCA3-201ENST00000301732 PLPPR3Q6T4P5 718 aa17.08■□□□□ 0.32
ABCA3-201ENST00000301732 HSP90AA1P07900 732 aaKnown RBP17.07■□□□□ 0.32
ABCA3-201ENST00000301732 FAM9BQ8IZU0 186 aa17.06■□□□□ 0.32
ABCA3-201ENST00000301732 SENP3Q9H4L4 574 aaPredicted RBP17.04■□□□□ 0.32
ABCA3-201ENST00000301732 RTN4Q9NQC3 1192 aaKnown RBP17.04■□□□□ 0.32
ABCA3-201ENST00000301732 TPRNQ4KMQ1 711 aa16.99■□□□□ 0.31
ABCA3-201ENST00000301732 HNRNPUQ00839 825 aaKnown RBP eCLIP16.99■□□□□ 0.31
ABCA3-201ENST00000301732 HIRIP3Q9BW71 556 aaPredicted RBP16.99■□□□□ 0.31
ABCA3-201ENST00000301732 SCAF1Q9H7N4 1312 aaKnown RBP16.98■□□□□ 0.31
ABCA3-201ENST00000301732 FBLN2P98095 1184 aa16.96■□□□□ 0.31
ABCA3-201ENST00000301732 DDX10Q13206 875 aaKnown RBP16.96■□□□□ 0.3
ABCA3-201ENST00000301732 ANP32BQ92688 251 aaKnown RBP16.95■□□□□ 0.3
ABCA3-201ENST00000301732 PLEKHG5O94827 1062 aa16.92■□□□□ 0.3
ABCA3-201ENST00000301732 ZNF777Q9ULD5 760 aaPredicted RBP16.9■□□□□ 0.3
ABCA3-201ENST00000301732 AMER1Q5JTC6 1135 aaPredicted RBP16.88■□□□□ 0.29
ABCA3-201ENST00000301732 GLIPR1L2Q4G1C9 344 aa16.84■□□□□ 0.29
ABCA3-201ENST00000301732 NEFMP07197 916 aa16.83■□□□□ 0.29
ABCA3-201ENST00000301732 CCDC136Q96JN2 1154 aa16.82■□□□□ 0.28
ABCA3-201ENST00000301732 CHGAP10645 457 aaKnown RBP16.8■□□□□ 0.28
ABCA3-201ENST00000301732 PABPN1Q86U42 306 aaKnown RBP eCLIP16.79■□□□□ 0.28
ABCA3-201ENST00000301732 MIER1Q8N108 512 aa16.74■□□□□ 0.27
ABCA3-201ENST00000301732 TAOK2Q9UL54 1235 aa16.74■□□□□ 0.27
ABCA3-201ENST00000301732 UPF2Q9HAU5 1272 aaKnown RBP16.73■□□□□ 0.27
ABCA3-201ENST00000301732 TULP1O00294 542 aaPredicted RBP16.73■□□□□ 0.27
ABCA3-201ENST00000301732 ARID4BQ4LE39 1312 aaPredicted RBP16.71■□□□□ 0.27
ABCA3-201ENST00000301732 A0A0G2JS52 829 aa16.7■□□□□ 0.26
ABCA3-201ENST00000301732 LAS1LQ9Y4W2 734 aaKnown RBP16.67■□□□□ 0.26
ABCA3-201ENST00000301732 NCLP19338 710 aaKnown RBP16.66■□□□□ 0.26
ABCA3-201ENST00000301732 CHIC2Q9UKJ5 165 aa16.65■□□□□ 0.26
ABCA3-201ENST00000301732 ZBTB7CA1YPR0 619 aa16.65■□□□□ 0.26
ABCA3-201ENST00000301732 KDM2AQ9Y2K7 1162 aa16.65■□□□□ 0.26
ABCA3-201ENST00000301732 TMC1Q8TDI8 760 aa16.61■□□□□ 0.25
ABCA3-201ENST00000301732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.61■□□□□ 0.25
ABCA3-201ENST00000301732 MRS2Q9HD23 443 aa16.59■□□□□ 0.25
ABCA3-201ENST00000301732 ARID3AQ99856 593 aa16.58■□□□□ 0.24
ABCA3-201ENST00000301732 NAP1L5Q96NT1 182 aaPredicted RBP16.57■□□□□ 0.24
ABCA3-201ENST00000301732 TRIM44Q96DX7 344 aaPredicted RBP16.55■□□□□ 0.24
ABCA3-201ENST00000301732 TONSLQ96HA7 1378 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms