RNA–Protein interactions for RNA: ENST00000299366.11

CDH23-202, Transcript of cadherin related 23, humanhuman

TSL 5 BASIC

Gene CDH23, Length 3,954 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH23-202ENST00000299366 DCAF8L2P0C7V8 631 aa26.18■■□□□ 1.78
CDH23-202ENST00000299366 NISCHQ9Y2I1 1504 aa25.81■■□□□ 1.72
CDH23-202ENST00000299366 SUPT5HO00267 1087 aaKnown RBP25.48■■□□□ 1.67
CDH23-202ENST00000299366 SHROOM4Q9ULL8 1493 aa25.28■■□□□ 1.64
CDH23-202ENST00000299366 EHMT2Q96KQ7 1210 aa24.77■■□□□ 1.56
CDH23-202ENST00000299366 PCGF6Q9BYE7 350 aa24.07■■□□□ 1.44
CDH23-202ENST00000299366 FAM9AQ8IZU1 332 aaPredicted RBP24.04■■□□□ 1.44
CDH23-202ENST00000299366 TTBK1Q5TCY1 1321 aaPredicted RBP23.87■■□□□ 1.41
CDH23-202ENST00000299366 PPARGC1BQ86YN6 1023 aaKnown RBP23.41■■□□□ 1.34
CDH23-202ENST00000299366 HRCP23327 699 aa23.38■■□□□ 1.33
CDH23-202ENST00000299366 RANGAP1P46060 587 aaPredicted RBP23.33■■□□□ 1.33
CDH23-202ENST00000299366 LOC105371045A0A1W2PR82 267 aa23.26■■□□□ 1.31
CDH23-202ENST00000299366 TRIM41Q8WV44 630 aa23.23■■□□□ 1.31
CDH23-202ENST00000299366 CHIC1Q5VXU3 224 aa23.03■■□□□ 1.28
CDH23-202ENST00000299366 CCER1Q8TC90 406 aaPredicted RBP22.98■■□□□ 1.27
CDH23-202ENST00000299366 APLP2Q06481 763 aa22.92■■□□□ 1.26
CDH23-202ENST00000299366 YTHDC1Q96MU7 727 aaKnown RBP22.78■■□□□ 1.24
CDH23-202ENST00000299366 UBTFP17480 764 aaKnown RBP22.78■■□□□ 1.24
CDH23-202ENST00000299366 TRIM26Q12899 539 aaPredicted RBP22.65■■□□□ 1.22
CDH23-202ENST00000299366 ATP1B4Q9UN42 357 aaPredicted RBP22.58■■□□□ 1.21
CDH23-202ENST00000299366 ZEB1P37275 1124 aaPredicted RBP22.55■■□□□ 1.2
CDH23-202ENST00000299366 MYO15BQ96JP2 1530 aa22.47■■□□□ 1.19
CDH23-202ENST00000299366 CENPBP07199 599 aaPredicted RBP22.46■■□□□ 1.19
CDH23-202ENST00000299366 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.45■■□□□ 1.18
CDH23-202ENST00000299366 PELP1Q8IZL8 1130 aaKnown RBP22.39■■□□□ 1.17
CDH23-202ENST00000299366 HNRNPUL2Q1KMD3 747 aaKnown RBP22.34■■□□□ 1.17
CDH23-202ENST00000299366 ITGAEP38570 1179 aa22.32■■□□□ 1.16
CDH23-202ENST00000299366 SCAF1Q9H7N4 1312 aaKnown RBP22.03■■□□□ 1.12
CDH23-202ENST00000299366 CNGB1Q14028 1251 aaPredicted RBP21.98■■□□□ 1.11
CDH23-202ENST00000299366 PABPN1Q86U42 306 aaKnown RBP eCLIP21.97■■□□□ 1.11
CDH23-202ENST00000299366 DIEXFQ68CQ4 756 aaKnown RBP21.94■■□□□ 1.1
CDH23-202ENST00000299366 ABCC9O60706 1549 aa21.88■■□□□ 1.09
CDH23-202ENST00000299366 GTF3C3Q9Y5Q9 886 aa21.86■■□□□ 1.09
CDH23-202ENST00000299366 DCAF1Q9Y4B6 1507 aa21.82■■□□□ 1.08
CDH23-202ENST00000299366 POLR3GLQ9BT43 218 aa21.72■■□□□ 1.07
CDH23-202ENST00000299366 NEUROD1Q13562 356 aa21.71■■□□□ 1.07
CDH23-202ENST00000299366 ACIN1Q9UKV3 1341 aaKnown RBP21.7■■□□□ 1.07
CDH23-202ENST00000299366 ERICH6Q7L0X2 663 aa21.7■■□□□ 1.06
CDH23-202ENST00000299366 NEFLP07196 543 aa21.7■■□□□ 1.06
CDH23-202ENST00000299366 ZCCHC6Q5VYS8 1495 aaKnown RBP21.68■■□□□ 1.06
CDH23-202ENST00000299366 BCANQ96GW7 911 aa21.58■■□□□ 1.04
CDH23-202ENST00000299366 FAM50AQ14320 339 aaKnown RBP21.5■■□□□ 1.03
CDH23-202ENST00000299366 MYT1Q01538 1121 aa21.46■■□□□ 1.03
CDH23-202ENST00000299366 P3H3Q8IVL6 736 aa21.4■■□□□ 1.02
CDH23-202ENST00000299366 CSRNP3Q8WYN3 585 aa21.36■■□□□ 1.01
CDH23-202ENST00000299366 ZNF316A6NFI3 1004 aaPredicted RBP21.35■■□□□ 1.01
CDH23-202ENST00000299366 ARID3CA6NKF2 412 aa21.31■■□□□ 1
CDH23-202ENST00000299366 CCDC180Q9P1Z9 1646 aa21.3■■□□□ 1
CDH23-202ENST00000299366 SCRIBQ14160 1630 aa21.25■□□□□ 0.99
CDH23-202ENST00000299366 TRIM52Q96A61 297 aa21.18■□□□□ 0.98
CDH23-202ENST00000299366 ZNF326Q5BKZ1 582 aaKnown RBP21.13■□□□□ 0.97
CDH23-202ENST00000299366 MYT1LQ9UL68 1186 aa21.12■□□□□ 0.97
CDH23-202ENST00000299366 MIER1Q8N108 512 aa21.09■□□□□ 0.97
CDH23-202ENST00000299366 HIRIP3Q9BW71 556 aaPredicted RBP21.07■□□□□ 0.96
CDH23-202ENST00000299366 DDX10Q13206 875 aaKnown RBP20.96■□□□□ 0.95
CDH23-202ENST00000299366 RSF1Q96T23 1441 aaPredicted RBP20.96■□□□□ 0.95
CDH23-202ENST00000299366 ANP32CO43423 234 aa20.92■□□□□ 0.94
CDH23-202ENST00000299366 FBLN2P98095 1184 aa20.91■□□□□ 0.94
CDH23-202ENST00000299366 SLC4A1APQ9BWU0 796 aaKnown RBP20.87■□□□□ 0.93
CDH23-202ENST00000299366 FKBP8Q14318 412 aa20.84■□□□□ 0.93
CDH23-202ENST00000299366 SENP3-EIF4A1A0A087X0R7 540 aa20.83■□□□□ 0.93
CDH23-202ENST00000299366 CHIC2Q9UKJ5 165 aa20.77■□□□□ 0.92
CDH23-202ENST00000299366 IRX6P78412 446 aaPredicted RBP20.75■□□□□ 0.91
CDH23-202ENST00000299366 CECR2Q9BXF3 1484 aa20.74■□□□□ 0.91
CDH23-202ENST00000299366 ZNF777Q9ULD5 760 aaPredicted RBP20.74■□□□□ 0.91
CDH23-202ENST00000299366 DAXXQ9UER7 740 aaPredicted RBP20.72■□□□□ 0.91
CDH23-202ENST00000299366 RB1CC1Q8TDY2 1594 aa20.7■□□□□ 0.9
CDH23-202ENST00000299366 SALL2Q9Y467 1007 aaPredicted RBP20.69■□□□□ 0.9
CDH23-202ENST00000299366 HNRNPUQ00839 825 aaKnown RBP eCLIP20.67■□□□□ 0.9
CDH23-202ENST00000299366 CEP162Q5TB80 1403 aa20.66■□□□□ 0.9
CDH23-202ENST00000299366 FAM9BQ8IZU0 186 aa20.66■□□□□ 0.9
CDH23-202ENST00000299366 CLSPNQ9HAW4 1339 aa20.63■□□□□ 0.89
CDH23-202ENST00000299366 BCL11AQ9H165 835 aa20.63■□□□□ 0.89
CDH23-202ENST00000299366 CDK11AQ9UQ88 783 aaPredicted RBP20.61■□□□□ 0.89
CDH23-202ENST00000299366 CLIP1P30622 1438 aa20.61■□□□□ 0.89
CDH23-202ENST00000299366 RTL5Q5HYW3 569 aaPredicted RBP20.54■□□□□ 0.88
CDH23-202ENST00000299366 TONSLQ96HA7 1378 aa20.53■□□□□ 0.88
CDH23-202ENST00000299366 NPM2Q86SE8 214 aaKnown RBP20.53■□□□□ 0.88
CDH23-202ENST00000299366 SIN3AQ96ST3 1273 aa20.51■□□□□ 0.87
CDH23-202ENST00000299366 SUPT16HQ9Y5B9 1047 aaKnown RBP20.51■□□□□ 0.87
CDH23-202ENST00000299366 SOGA1O94964 1423 aa20.51■□□□□ 0.87
CDH23-202ENST00000299366 RRP7BPQ9NSQ0 103 aa20.47■□□□□ 0.87
CDH23-202ENST00000299366 KDM2AQ9Y2K7 1162 aa20.39■□□□□ 0.86
CDH23-202ENST00000299366 WRNQ14191 1432 aaPredicted RBP eCLIP20.36■□□□□ 0.85
CDH23-202ENST00000299366 SENP3Q9H4L4 574 aaPredicted RBP20.36■□□□□ 0.85
CDH23-202ENST00000299366 ANP32EQ9BTT0 268 aa20.36■□□□□ 0.85
CDH23-202ENST00000299366 MROH2BQ7Z745 1585 aa20.35■□□□□ 0.85
CDH23-202ENST00000299366 MRS2Q9HD23 443 aa20.34■□□□□ 0.85
CDH23-202ENST00000299366 CCDC88BA6NC98 1476 aa20.32■□□□□ 0.84
CDH23-202ENST00000299366 NBR1Q14596 966 aa20.32■□□□□ 0.84
CDH23-202ENST00000299366 ABCC8Q09428 1581 aa20.32■□□□□ 0.84
CDH23-202ENST00000299366 KANK4Q5T7N3 995 aaPredicted RBP20.31■□□□□ 0.84
CDH23-202ENST00000299366 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.31■□□□□ 0.84
CDH23-202ENST00000299366 TNIKQ9UKE5 1360 aa20.31■□□□□ 0.84
CDH23-202ENST00000299366 GOLGA3Q08378 1498 aa20.3■□□□□ 0.84
CDH23-202ENST00000299366 TSHZ2Q9NRE2 1034 aa20.29■□□□□ 0.84
CDH23-202ENST00000299366 KCNH8Q96L42 1107 aa20.28■□□□□ 0.84
CDH23-202ENST00000299366 MTUS2Q5JR59 1369 aa20.28■□□□□ 0.84
CDH23-202ENST00000299366 TMC1Q8TDI8 760 aa20.2■□□□□ 0.82
CDH23-202ENST00000299366 CCDC136Q96JN2 1154 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms