RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 DCAF8L2P0C7V8 631 aa27.59■■■□□ 2.01
SSRP1-202ENST00000293880 SUPT5HO00267 1087 aaKnown RBP26.37■■□□□ 1.81
SSRP1-202ENST00000293880 EHMT2Q96KQ7 1210 aa26.37■■□□□ 1.81
SSRP1-202ENST00000293880 PELP1Q8IZL8 1130 aaKnown RBP25.94■■□□□ 1.74
SSRP1-202ENST00000293880 SHROOM4Q9ULL8 1493 aa25.85■■□□□ 1.73
SSRP1-202ENST00000293880 TTBK1Q5TCY1 1321 aaPredicted RBP25.49■■□□□ 1.67
SSRP1-202ENST00000293880 NISCHQ9Y2I1 1504 aa25.47■■□□□ 1.67
SSRP1-202ENST00000293880 ERICH6Q7L0X2 663 aa25.43■■□□□ 1.66
SSRP1-202ENST00000293880 MYT1Q01538 1121 aa25.16■■□□□ 1.62
SSRP1-202ENST00000293880 FAM9AQ8IZU1 332 aaPredicted RBP25.11■■□□□ 1.61
SSRP1-202ENST00000293880 PCGF6Q9BYE7 350 aa25.1■■□□□ 1.61
SSRP1-202ENST00000293880 APLP2Q06481 763 aa25.09■■□□□ 1.61
SSRP1-202ENST00000293880 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
SSRP1-202ENST00000293880 YTHDC1Q96MU7 727 aaKnown RBP24.77■■□□□ 1.56
SSRP1-202ENST00000293880 CCER1Q8TC90 406 aaPredicted RBP24.74■■□□□ 1.55
SSRP1-202ENST00000293880 CENPBP07199 599 aaPredicted RBP24.73■■□□□ 1.55
SSRP1-202ENST00000293880 ATP1B4Q9UN42 357 aaPredicted RBP24.52■■□□□ 1.52
SSRP1-202ENST00000293880 PPARGC1BQ86YN6 1023 aaKnown RBP24.31■■□□□ 1.48
SSRP1-202ENST00000293880 NEFLP07196 543 aa24.3■■□□□ 1.48
SSRP1-202ENST00000293880 ZEB1P37275 1124 aaPredicted RBP24.26■■□□□ 1.47
SSRP1-202ENST00000293880 TRIM41Q8WV44 630 aa24.11■■□□□ 1.45
SSRP1-202ENST00000293880 UBTFP17480 764 aaKnown RBP24.02■■□□□ 1.44
SSRP1-202ENST00000293880 CNGB1Q14028 1251 aaPredicted RBP23.89■■□□□ 1.41
SSRP1-202ENST00000293880 POLR3GLQ9BT43 218 aa23.88■■□□□ 1.41
SSRP1-202ENST00000293880 DAXXQ9UER7 740 aaPredicted RBP23.82■■□□□ 1.4
SSRP1-202ENST00000293880 ITGAEP38570 1179 aa23.73■■□□□ 1.39
SSRP1-202ENST00000293880 HRCP23327 699 aa23.59■■□□□ 1.37
SSRP1-202ENST00000293880 TRIM26Q12899 539 aaPredicted RBP23.53■■□□□ 1.36
SSRP1-202ENST00000293880 CHIC1Q5VXU3 224 aa23.5■■□□□ 1.35
SSRP1-202ENST00000293880 MYT1LQ9UL68 1186 aa23.48■■□□□ 1.35
SSRP1-202ENST00000293880 RTL5Q5HYW3 569 aaPredicted RBP23.46■■□□□ 1.35
SSRP1-202ENST00000293880 HNRNPUL2Q1KMD3 747 aaKnown RBP23.42■■□□□ 1.34
SSRP1-202ENST00000293880 LOC105371045A0A1W2PR82 267 aa23.36■■□□□ 1.33
SSRP1-202ENST00000293880 ZNF316A6NFI3 1004 aaPredicted RBP23.35■■□□□ 1.33
SSRP1-202ENST00000293880 SLC4A1APQ9BWU0 796 aaKnown RBP23.35■■□□□ 1.33
SSRP1-202ENST00000293880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.34■■□□□ 1.33
SSRP1-202ENST00000293880 BCANQ96GW7 911 aa23.29■■□□□ 1.32
SSRP1-202ENST00000293880 CLSPNQ9HAW4 1339 aa23.24■■□□□ 1.31
SSRP1-202ENST00000293880 DIEXFQ68CQ4 756 aaKnown RBP23.12■■□□□ 1.29
SSRP1-202ENST00000293880 EIF5BO60841 1220 aaKnown RBP23.08■■□□□ 1.29
SSRP1-202ENST00000293880 BCL11AQ9H165 835 aa22.98■■□□□ 1.27
SSRP1-202ENST00000293880 GTF3C3Q9Y5Q9 886 aa22.98■■□□□ 1.27
SSRP1-202ENST00000293880 NEUROD1Q13562 356 aa22.92■■□□□ 1.26
SSRP1-202ENST00000293880 FAM50AQ14320 339 aaKnown RBP22.86■■□□□ 1.25
SSRP1-202ENST00000293880 ABCC9O60706 1549 aa22.82■■□□□ 1.24
SSRP1-202ENST00000293880 PABPN1Q86U42 306 aaKnown RBP eCLIP22.8■■□□□ 1.24
SSRP1-202ENST00000293880 TRIM52Q96A61 297 aa22.78■■□□□ 1.24
SSRP1-202ENST00000293880 ZNF326Q5BKZ1 582 aaKnown RBP22.73■■□□□ 1.23
SSRP1-202ENST00000293880 CDK11AQ9UQ88 783 aaPredicted RBP22.72■■□□□ 1.23
SSRP1-202ENST00000293880 SLC24A1O60721 1099 aa22.65■■□□□ 1.22
SSRP1-202ENST00000293880 NPM2Q86SE8 214 aaKnown RBP22.63■■□□□ 1.21
SSRP1-202ENST00000293880 ANP32CO43423 234 aa22.57■■□□□ 1.2
SSRP1-202ENST00000293880 CANXP27824 592 aaKnown RBP22.56■■□□□ 1.2
SSRP1-202ENST00000293880 ZBTB47Q9UFB7 747 aaPredicted RBP22.52■■□□□ 1.2
SSRP1-202ENST00000293880 GLIPR1L2Q4G1C9 344 aa22.42■■□□□ 1.18
SSRP1-202ENST00000293880 ANP32AP39687 249 aaKnown RBP22.36■■□□□ 1.17
SSRP1-202ENST00000293880 ACIN1Q9UKV3 1341 aaKnown RBP22.34■■□□□ 1.17
SSRP1-202ENST00000293880 ARXQ96QS3 562 aa22.32■■□□□ 1.16
SSRP1-202ENST00000293880 ARID3CA6NKF2 412 aa22.31■■□□□ 1.16
SSRP1-202ENST00000293880 NBR1Q14596 966 aa22.29■■□□□ 1.16
SSRP1-202ENST00000293880 FBLN2P98095 1184 aa22.27■■□□□ 1.16
SSRP1-202ENST00000293880 FKBP8Q14318 412 aa22.25■■□□□ 1.15
SSRP1-202ENST00000293880 P3H3Q8IVL6 736 aa22.14■■□□□ 1.14
SSRP1-202ENST00000293880 SALL2Q9Y467 1007 aaPredicted RBP22.11■■□□□ 1.13
SSRP1-202ENST00000293880 HSP90AA1P07900 732 aaKnown RBP22.08■■□□□ 1.12
SSRP1-202ENST00000293880 ANP32BQ92688 251 aaKnown RBP22.08■■□□□ 1.12
SSRP1-202ENST00000293880 NEFMP07197 916 aa22.05■■□□□ 1.12
SSRP1-202ENST00000293880 FAM9BQ8IZU0 186 aa22.01■■□□□ 1.11
SSRP1-202ENST00000293880 ZNF777Q9ULD5 760 aaPredicted RBP22■■□□□ 1.11
SSRP1-202ENST00000293880 IRX6P78412 446 aaPredicted RBP21.96■■□□□ 1.11
SSRP1-202ENST00000293880 HNRNPUQ00839 825 aaKnown RBP eCLIP21.95■■□□□ 1.1
SSRP1-202ENST00000293880 PLPPR3Q6T4P5 718 aa21.95■■□□□ 1.1
SSRP1-202ENST00000293880 AMER1Q5JTC6 1135 aaPredicted RBP21.88■■□□□ 1.09
SSRP1-202ENST00000293880 DDX10Q13206 875 aaKnown RBP21.87■■□□□ 1.09
SSRP1-202ENST00000293880 RTN4Q9NQC3 1192 aaKnown RBP21.86■■□□□ 1.09
SSRP1-202ENST00000293880 UPF2Q9HAU5 1272 aaKnown RBP21.82■■□□□ 1.08
SSRP1-202ENST00000293880 CHGAP10645 457 aaKnown RBP21.8■■□□□ 1.08
SSRP1-202ENST00000293880 SCAF1Q9H7N4 1312 aaKnown RBP21.77■■□□□ 1.08
SSRP1-202ENST00000293880 CCDC136Q96JN2 1154 aa21.76■■□□□ 1.07
SSRP1-202ENST00000293880 SENP3-EIF4A1A0A087X0R7 540 aa21.73■■□□□ 1.07
SSRP1-202ENST00000293880 SENP3Q9H4L4 574 aaPredicted RBP21.72■■□□□ 1.07
SSRP1-202ENST00000293880 HIRIP3Q9BW71 556 aaPredicted RBP21.71■■□□□ 1.07
SSRP1-202ENST00000293880 TONSLQ96HA7 1378 aa21.69■■□□□ 1.06
SSRP1-202ENST00000293880 TPRNQ4KMQ1 711 aa21.67■■□□□ 1.06
SSRP1-202ENST00000293880 STAG3Q9UJ98 1225 aa21.61■■□□□ 1.05
SSRP1-202ENST00000293880 CHIC2Q9UKJ5 165 aa21.6■■□□□ 1.05
SSRP1-202ENST00000293880 PLEKHG5O94827 1062 aa21.59■■□□□ 1.05
SSRP1-202ENST00000293880 TMC1Q8TDI8 760 aa21.58■■□□□ 1.05
SSRP1-202ENST00000293880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.58■■□□□ 1.042e-7■■■□□ 17.6
SSRP1-202ENST00000293880 MIER1Q8N108 512 aa21.57■■□□□ 1.04
SSRP1-202ENST00000293880 TNNT2P45379 298 aaPredicted RBP21.55■■□□□ 1.04
SSRP1-202ENST00000293880 KDM2AQ9Y2K7 1162 aa21.55■■□□□ 1.04
SSRP1-202ENST00000293880 WDR43Q15061 677 aaKnown RBP eCLIP21.54■■□□□ 1.04
SSRP1-202ENST00000293880 SCRIBQ14160 1630 aa21.54■■□□□ 1.04
SSRP1-202ENST00000293880 MRS2Q9HD23 443 aa21.52■■□□□ 1.04
SSRP1-202ENST00000293880 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.52■■□□□ 1.04
SSRP1-202ENST00000293880 NAP1L5Q96NT1 182 aaPredicted RBP21.52■■□□□ 1.04
SSRP1-202ENST00000293880 ZBTB7CA1YPR0 619 aa21.51■■□□□ 1.03
SSRP1-202ENST00000293880 A0A0G2JS52 829 aa21.48■■□□□ 1.03
SSRP1-202ENST00000293880 NCLP19338 710 aaKnown RBP21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms