RNA–Protein interactions for RNA: ENST00000275233.11

SHPRH-201, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHPRH, Length 6,649 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-201ENST00000275233 DCAF8L2P0C7V8 631 aa21■□□□□ 0.95
SHPRH-201ENST00000275233 SUPT5HO00267 1087 aaKnown RBP19.7■□□□□ 0.74
SHPRH-201ENST00000275233 EHMT2Q96KQ7 1210 aa19.54■□□□□ 0.72
SHPRH-201ENST00000275233 SHROOM4Q9ULL8 1493 aa19.39■□□□□ 0.69
SHPRH-201ENST00000275233 NISCHQ9Y2I1 1504 aa18.96■□□□□ 0.63
SHPRH-201ENST00000275233 TTBK1Q5TCY1 1321 aaPredicted RBP18.82■□□□□ 0.6
SHPRH-201ENST00000275233 APLP2Q06481 763 aa18.76■□□□□ 0.59
SHPRH-201ENST00000275233 FAM9AQ8IZU1 332 aaPredicted RBP18.72■□□□□ 0.59
SHPRH-201ENST00000275233 RANGAP1P46060 587 aaPredicted RBP18.62■□□□□ 0.57
SHPRH-201ENST00000275233 PELP1Q8IZL8 1130 aaKnown RBP18.6■□□□□ 0.57
SHPRH-201ENST00000275233 ATP1B4Q9UN42 357 aaPredicted RBP18.42■□□□□ 0.54
SHPRH-201ENST00000275233 PCGF6Q9BYE7 350 aa18.37■□□□□ 0.53
SHPRH-201ENST00000275233 TRIM41Q8WV44 630 aa18.09■□□□□ 0.49
SHPRH-201ENST00000275233 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.48
SHPRH-201ENST00000275233 ERICH6Q7L0X2 663 aa18.08■□□□□ 0.48
SHPRH-201ENST00000275233 UBTFP17480 764 aaKnown RBP18.04■□□□□ 0.48
SHPRH-201ENST00000275233 PPARGC1BQ86YN6 1023 aaKnown RBP17.95■□□□□ 0.46
SHPRH-201ENST00000275233 YTHDC1Q96MU7 727 aaKnown RBP17.9■□□□□ 0.46
SHPRH-201ENST00000275233 CENPBP07199 599 aaPredicted RBP17.89■□□□□ 0.45
SHPRH-201ENST00000275233 MYT1LQ9UL68 1186 aa17.78■□□□□ 0.44
SHPRH-201ENST00000275233 ZEB1P37275 1124 aaPredicted RBP17.74■□□□□ 0.43
SHPRH-201ENST00000275233 NEFLP07196 543 aa17.69■□□□□ 0.42
SHPRH-201ENST00000275233 POLR3GLQ9BT43 218 aa17.68■□□□□ 0.42
SHPRH-201ENST00000275233 ITGAEP38570 1179 aa17.68■□□□□ 0.42
SHPRH-201ENST00000275233 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.68■□□□□ 0.42
SHPRH-201ENST00000275233 HNRNPUL2Q1KMD3 747 aaKnown RBP17.68■□□□□ 0.42
SHPRH-201ENST00000275233 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
SHPRH-201ENST00000275233 CNGB1Q14028 1251 aaPredicted RBP17.62■□□□□ 0.41
SHPRH-201ENST00000275233 SLC4A1APQ9BWU0 796 aaKnown RBP17.41■□□□□ 0.38
SHPRH-201ENST00000275233 MYT1Q01538 1121 aa17.34■□□□□ 0.37
SHPRH-201ENST00000275233 LOC105371045A0A1W2PR82 267 aa17.33■□□□□ 0.36
SHPRH-201ENST00000275233 DAXXQ9UER7 740 aaPredicted RBP17.32■□□□□ 0.36
SHPRH-201ENST00000275233 TRIM26Q12899 539 aaPredicted RBP17.3■□□□□ 0.36
SHPRH-201ENST00000275233 HRCP23327 699 aa17.14■□□□□ 0.33
SHPRH-201ENST00000275233 FAM50AQ14320 339 aaKnown RBP17.1■□□□□ 0.33
SHPRH-201ENST00000275233 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.32
SHPRH-201ENST00000275233 TRIM52Q96A61 297 aa17.04■□□□□ 0.32
SHPRH-201ENST00000275233 CLSPNQ9HAW4 1339 aa17.03■□□□□ 0.32
SHPRH-201ENST00000275233 NEUROD1Q13562 356 aa16.99■□□□□ 0.31
SHPRH-201ENST00000275233 FBLN2P98095 1184 aa16.95■□□□□ 0.3
SHPRH-201ENST00000275233 ZNF326Q5BKZ1 582 aaKnown RBP16.94■□□□□ 0.3
SHPRH-201ENST00000275233 ZNF316A6NFI3 1004 aaPredicted RBP16.92■□□□□ 0.3
SHPRH-201ENST00000275233 BCL11AQ9H165 835 aa16.9■□□□□ 0.3
SHPRH-201ENST00000275233 ABCC9O60706 1549 aa16.88■□□□□ 0.29
SHPRH-201ENST00000275233 SLC24A1O60721 1099 aa16.88■□□□□ 0.29
SHPRH-201ENST00000275233 ARID3CA6NKF2 412 aa16.84■□□□□ 0.29
SHPRH-201ENST00000275233 DIEXFQ68CQ4 756 aaKnown RBP16.84■□□□□ 0.29
SHPRH-201ENST00000275233 BCANQ96GW7 911 aa16.82■□□□□ 0.28
SHPRH-201ENST00000275233 RTL5Q5HYW3 569 aaPredicted RBP16.75■□□□□ 0.27
SHPRH-201ENST00000275233 P3H3Q8IVL6 736 aa16.73■□□□□ 0.27
SHPRH-201ENST00000275233 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
SHPRH-201ENST00000275233 ZBTB47Q9UFB7 747 aaPredicted RBP16.66■□□□□ 0.26
SHPRH-201ENST00000275233 ANP32CO43423 234 aa16.63■□□□□ 0.25
SHPRH-201ENST00000275233 CANXP27824 592 aaKnown RBP16.62■□□□□ 0.25
SHPRH-201ENST00000275233 ZNF777Q9ULD5 760 aaPredicted RBP16.61■□□□□ 0.25
SHPRH-201ENST00000275233 NEFMP07197 916 aa16.49■□□□□ 0.23
SHPRH-201ENST00000275233 GTF3C3Q9Y5Q9 886 aa16.49■□□□□ 0.23
SHPRH-201ENST00000275233 CDK11AQ9UQ88 783 aaPredicted RBP16.48■□□□□ 0.23
SHPRH-201ENST00000275233 CHGAP10645 457 aaKnown RBP16.46■□□□□ 0.23
SHPRH-201ENST00000275233 ESF1Q9H501 851 aaKnown RBP16.43■□□□□ 0.22
SHPRH-201ENST00000275233 STAG3Q9UJ98 1225 aa16.4■□□□□ 0.22
SHPRH-201ENST00000275233 NPM2Q86SE8 214 aaKnown RBP16.38■□□□□ 0.21
SHPRH-201ENST00000275233 SENP3Q9H4L4 574 aaPredicted RBP16.31■□□□□ 0.2
SHPRH-201ENST00000275233 SALL2Q9Y467 1007 aaPredicted RBP16.31■□□□□ 0.2
SHPRH-201ENST00000275233 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.28■□□□□ 0.21e-6■■□□□ 11.8
SHPRH-201ENST00000275233 CSRNP3Q8WYN3 585 aa16.27■□□□□ 0.19
SHPRH-201ENST00000275233 PLEKHG5O94827 1062 aa16.25■□□□□ 0.19
SHPRH-201ENST00000275233 SCAF1Q9H7N4 1312 aaKnown RBP16.25■□□□□ 0.19
SHPRH-201ENST00000275233 CHIC2Q9UKJ5 165 aa16.23■□□□□ 0.19
SHPRH-201ENST00000275233 NPM1P06748 294 aaKnown RBP eCLIP16.22■□□□□ 0.19
SHPRH-201ENST00000275233 FAM9BQ8IZU0 186 aa16.2■□□□□ 0.18
SHPRH-201ENST00000275233 ANP32AP39687 249 aaKnown RBP16.2■□□□□ 0.18
SHPRH-201ENST00000275233 A0A0G2JS52 829 aa16.19■□□□□ 0.18
SHPRH-201ENST00000275233 SCRIBQ14160 1630 aa16.17■□□□□ 0.18
SHPRH-201ENST00000275233 HSP90AA1P07900 732 aaKnown RBP16.16■□□□□ 0.18
SHPRH-201ENST00000275233 TONSLQ96HA7 1378 aa16.16■□□□□ 0.18
SHPRH-201ENST00000275233 KDM2AQ9Y2K7 1162 aa16.14■□□□□ 0.18
SHPRH-201ENST00000275233 FKBP8Q14318 412 aa16.14■□□□□ 0.17
SHPRH-201ENST00000275233 ZBTB7CA1YPR0 619 aa16.14■□□□□ 0.17
SHPRH-201ENST00000275233 DDX10Q13206 875 aaKnown RBP16.13■□□□□ 0.17
SHPRH-201ENST00000275233 HNRNPUQ00839 825 aaKnown RBP eCLIP16.12■□□□□ 0.17
SHPRH-201ENST00000275233 ACIN1Q9UKV3 1341 aaKnown RBP16.07■□□□□ 0.16
SHPRH-201ENST00000275233 ARXQ96QS3 562 aa16.04■□□□□ 0.16
SHPRH-201ENST00000275233 HIRIP3Q9BW71 556 aaPredicted RBP16.04■□□□□ 0.16
SHPRH-201ENST00000275233 C14orf37Q86TY3 774 aa16.03■□□□□ 0.16
SHPRH-201ENST00000275233 TMC1Q8TDI8 760 aa16.02■□□□□ 0.16
SHPRH-201ENST00000275233 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
SHPRH-201ENST00000275233 WDR43Q15061 677 aaKnown RBP eCLIP16■□□□□ 0.15
SHPRH-201ENST00000275233 ANP32BQ92688 251 aaKnown RBP16■□□□□ 0.15
SHPRH-201ENST00000275233 KCNH8Q96L42 1107 aa15.98■□□□□ 0.15
SHPRH-201ENST00000275233 CHMP7Q8WUX9 453 aaPredicted RBP15.97■□□□□ 0.15
SHPRH-201ENST00000275233 IRX6P78412 446 aaPredicted RBP15.97■□□□□ 0.15
SHPRH-201ENST00000275233 SENP3-EIF4A1A0A087X0R7 540 aa15.96■□□□□ 0.15
SHPRH-201ENST00000275233 EIF5BO60841 1220 aaKnown RBP15.95■□□□□ 0.14
SHPRH-201ENST00000275233 TSPY4P0CV99 314 aa15.95■□□□□ 0.14
SHPRH-201ENST00000275233 TSPY10P0CW01 314 aa15.95■□□□□ 0.14
SHPRH-201ENST00000275233 NBR1Q14596 966 aa15.94■□□□□ 0.14
SHPRH-201ENST00000275233 CCDC136Q96JN2 1154 aa15.92■□□□□ 0.14
SHPRH-201ENST00000275233 RRP7BPQ9NSQ0 103 aa15.91■□□□□ 0.14
SHPRH-201ENST00000275233 MRS2Q9HD23 443 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 104.8 ms