RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 DCAF8L2P0C7V8 631 aa20.15■□□□□ 0.82
USP53-201ENST00000274030 SUPT5HO00267 1087 aaKnown RBP19.09■□□□□ 0.65
USP53-201ENST00000274030 EHMT2Q96KQ7 1210 aa18.75■□□□□ 0.59
USP53-201ENST00000274030 SHROOM4Q9ULL8 1493 aa18.7■□□□□ 0.58
USP53-201ENST00000274030 NISCHQ9Y2I1 1504 aa18.42■□□□□ 0.54
USP53-201ENST00000274030 FAM9AQ8IZU1 332 aaPredicted RBP18.1■□□□□ 0.49
USP53-201ENST00000274030 TTBK1Q5TCY1 1321 aaPredicted RBP18.08■□□□□ 0.49
USP53-201ENST00000274030 APLP2Q06481 763 aa18.05■□□□□ 0.48
USP53-201ENST00000274030 PELP1Q8IZL8 1130 aaKnown RBP17.95■□□□□ 0.46
USP53-201ENST00000274030 PCGF6Q9BYE7 350 aa17.85■□□□□ 0.45
USP53-201ENST00000274030 RANGAP1P46060 587 aaPredicted RBP17.85■□□□□ 0.45
USP53-201ENST00000274030 ATP1B4Q9UN42 357 aaPredicted RBP17.61■□□□□ 0.41
USP53-201ENST00000274030 TRIM41Q8WV44 630 aa17.53■□□□□ 0.4
USP53-201ENST00000274030 CCER1Q8TC90 406 aaPredicted RBP17.51■□□□□ 0.39
USP53-201ENST00000274030 UBTFP17480 764 aaKnown RBP17.42■□□□□ 0.38
USP53-201ENST00000274030 CENPBP07199 599 aaPredicted RBP17.39■□□□□ 0.37
USP53-201ENST00000274030 ERICH6Q7L0X2 663 aa17.37■□□□□ 0.37
USP53-201ENST00000274030 PPARGC1BQ86YN6 1023 aaKnown RBP17.35■□□□□ 0.37
USP53-201ENST00000274030 YTHDC1Q96MU7 727 aaKnown RBP17.3■□□□□ 0.36
USP53-201ENST00000274030 ZEB1P37275 1124 aaPredicted RBP17.28■□□□□ 0.36
USP53-201ENST00000274030 NEFLP07196 543 aa17.09■□□□□ 0.33
USP53-201ENST00000274030 ITGAEP38570 1179 aa17.03■□□□□ 0.32
USP53-201ENST00000274030 POLR3GLQ9BT43 218 aa16.94■□□□□ 0.3
USP53-201ENST00000274030 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.92■□□□□ 0.3
USP53-201ENST00000274030 HNRNPUL2Q1KMD3 747 aaKnown RBP16.92■□□□□ 0.3
USP53-201ENST00000274030 MYT1LQ9UL68 1186 aa16.91■□□□□ 0.3
USP53-201ENST00000274030 CNGB1Q14028 1251 aaPredicted RBP16.9■□□□□ 0.3
USP53-201ENST00000274030 LOC105371045A0A1W2PR82 267 aa16.9■□□□□ 0.3
USP53-201ENST00000274030 TRIM26Q12899 539 aaPredicted RBP16.88■□□□□ 0.29
USP53-201ENST00000274030 HRCP23327 699 aa16.78■□□□□ 0.28
USP53-201ENST00000274030 CHIC1Q5VXU3 224 aa16.75■□□□□ 0.27
USP53-201ENST00000274030 DAXXQ9UER7 740 aaPredicted RBP16.64■□□□□ 0.25
USP53-201ENST00000274030 MYT1Q01538 1121 aa16.62■□□□□ 0.25
USP53-201ENST00000274030 SLC4A1APQ9BWU0 796 aaKnown RBP16.6■□□□□ 0.25
USP53-201ENST00000274030 FAM50AQ14320 339 aaKnown RBP16.46■□□□□ 0.23
USP53-201ENST00000274030 DIEXFQ68CQ4 756 aaKnown RBP16.41■□□□□ 0.22
USP53-201ENST00000274030 PABPN1Q86U42 306 aaKnown RBP eCLIP16.4■□□□□ 0.22
USP53-201ENST00000274030 NEUROD1Q13562 356 aa16.38■□□□□ 0.21
USP53-201ENST00000274030 TRIM52Q96A61 297 aa16.38■□□□□ 0.21
USP53-201ENST00000274030 CLSPNQ9HAW4 1339 aa16.37■□□□□ 0.21
USP53-201ENST00000274030 ZNF326Q5BKZ1 582 aaKnown RBP16.29■□□□□ 0.2
USP53-201ENST00000274030 BCANQ96GW7 911 aa16.29■□□□□ 0.2
USP53-201ENST00000274030 ZNF316A6NFI3 1004 aaPredicted RBP16.26■□□□□ 0.19
USP53-201ENST00000274030 RTL5Q5HYW3 569 aaPredicted RBP16.21■□□□□ 0.19
USP53-201ENST00000274030 FBLN2P98095 1184 aa16.21■□□□□ 0.19
USP53-201ENST00000274030 ABCC9O60706 1549 aa16.2■□□□□ 0.18
USP53-201ENST00000274030 ARID3CA6NKF2 412 aa16.16■□□□□ 0.18
USP53-201ENST00000274030 BCL11AQ9H165 835 aa16.15■□□□□ 0.18
USP53-201ENST00000274030 GTF3C3Q9Y5Q9 886 aa16.12■□□□□ 0.17
USP53-201ENST00000274030 P3H3Q8IVL6 736 aa16.12■□□□□ 0.17
USP53-201ENST00000274030 ANP32CO43423 234 aa16.09■□□□□ 0.17
USP53-201ENST00000274030 SLC24A1O60721 1099 aa16.06■□□□□ 0.16
USP53-201ENST00000274030 ZBTB47Q9UFB7 747 aaPredicted RBP15.97■□□□□ 0.15
USP53-201ENST00000274030 CDK11AQ9UQ88 783 aaPredicted RBP15.96■□□□□ 0.15
USP53-201ENST00000274030 ZNF777Q9ULD5 760 aaPredicted RBP15.96■□□□□ 0.14
USP53-201ENST00000274030 CANXP27824 592 aaKnown RBP15.95■□□□□ 0.14
USP53-201ENST00000274030 CSRNP3Q8WYN3 585 aa15.87■□□□□ 0.13
USP53-201ENST00000274030 NEFMP07197 916 aa15.82■□□□□ 0.12
USP53-201ENST00000274030 NPM2Q86SE8 214 aaKnown RBP15.8■□□□□ 0.12
USP53-201ENST00000274030 PLPPR3Q6T4P5 718 aa15.79■□□□□ 0.12
USP53-201ENST00000274030 CHGAP10645 457 aaKnown RBP15.76■□□□□ 0.11
USP53-201ENST00000274030 ACIN1Q9UKV3 1341 aaKnown RBP15.76■□□□□ 0.11
USP53-201ENST00000274030 SALL2Q9Y467 1007 aaPredicted RBP15.73■□□□□ 0.11
USP53-201ENST00000274030 FKBP8Q14318 412 aa15.69■□□□□ 0.1
USP53-201ENST00000274030 ANP32AP39687 249 aaKnown RBP15.69■□□□□ 0.1
USP53-201ENST00000274030 DDX10Q13206 875 aaKnown RBP15.68■□□□□ 0.1
USP53-201ENST00000274030 FAM9BQ8IZU0 186 aa15.68■□□□□ 0.1
USP53-201ENST00000274030 ESF1Q9H501 851 aaKnown RBP15.66■□□□□ 0.1
USP53-201ENST00000274030 CHIC2Q9UKJ5 165 aa15.66■□□□□ 0.1
USP53-201ENST00000274030 HNRNPUQ00839 825 aaKnown RBP eCLIP15.66■□□□□ 0.1
USP53-201ENST00000274030 STAG3Q9UJ98 1225 aa15.66■□□□□ 0.1
USP53-201ENST00000274030 TONSLQ96HA7 1378 aa15.65■□□□□ 0.1
USP53-201ENST00000274030 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.62■□□□□ 0.09
USP53-201ENST00000274030 HSP90AA1P07900 732 aaKnown RBP15.56■□□□□ 0.08
USP53-201ENST00000274030 SENP3Q9H4L4 574 aaPredicted RBP15.56■□□□□ 0.08
USP53-201ENST00000274030 HIRIP3Q9BW71 556 aaPredicted RBP15.55■□□□□ 0.08
USP53-201ENST00000274030 KDM2AQ9Y2K7 1162 aa15.55■□□□□ 0.08
USP53-201ENST00000274030 SCRIBQ14160 1630 aa15.51■□□□□ 0.07
USP53-201ENST00000274030 NPM1P06748 294 aaKnown RBP eCLIP15.51■□□□□ 0.07
USP53-201ENST00000274030 TMC1Q8TDI8 760 aa15.51■□□□□ 0.07
USP53-201ENST00000274030 IRX6P78412 446 aaPredicted RBP15.48■□□□□ 0.07
USP53-201ENST00000274030 EIF5BO60841 1220 aaKnown RBP15.47■□□□□ 0.07
USP53-201ENST00000274030 CCDC136Q96JN2 1154 aa15.46■□□□□ 0.06
USP53-201ENST00000274030 PLEKHG5O94827 1062 aa15.45■□□□□ 0.06
USP53-201ENST00000274030 ARXQ96QS3 562 aa15.45■□□□□ 0.06
USP53-201ENST00000274030 UPF2Q9HAU5 1272 aaKnown RBP15.45■□□□□ 0.06
USP53-201ENST00000274030 MRS2Q9HD23 443 aa15.44■□□□□ 0.06
USP53-201ENST00000274030 NBR1Q14596 966 aa15.43■□□□□ 0.06
USP53-201ENST00000274030 SENP3-EIF4A1A0A087X0R7 540 aa15.42■□□□□ 0.06
USP53-201ENST00000274030 ANP32BQ92688 251 aaKnown RBP15.42■□□□□ 0.06
USP53-201ENST00000274030 TSPY4P0CV99 314 aa15.41■□□□□ 0.06
USP53-201ENST00000274030 TSPY10P0CW01 314 aa15.41■□□□□ 0.06
USP53-201ENST00000274030 SCAF1Q9H7N4 1312 aaKnown RBP15.41■□□□□ 0.06
USP53-201ENST00000274030 WDR43Q15061 677 aaKnown RBP eCLIP15.41■□□□□ 0.06
USP53-201ENST00000274030 MIER1Q8N108 512 aa15.39■□□□□ 0.05
USP53-201ENST00000274030 RRP7BPQ9NSQ0 103 aa15.38■□□□□ 0.05
USP53-201ENST00000274030 A0A0G2JS52 829 aa15.37■□□□□ 0.05
USP53-201ENST00000274030 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.37■□□□□ 0.05
USP53-201ENST00000274030 MTUS2Q5JR59 1369 aa15.37■□□□□ 0.05
USP53-201ENST00000274030 CHMP7Q8WUX9 453 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms