RNA–Protein interactions for RNA: ENST00000263073.10

SMG6-201, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG6, Length 5,960 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-201ENST00000263073 DCAF8L2P0C7V8 631 aa20.62■□□□□ 0.89
SMG6-201ENST00000263073 SUPT5HO00267 1087 aaKnown RBP19.94■□□□□ 0.78
SMG6-201ENST00000263073 EHMT2Q96KQ7 1210 aa19.77■□□□□ 0.76
SMG6-201ENST00000263073 SHROOM4Q9ULL8 1493 aa19.52■□□□□ 0.71
SMG6-201ENST00000263073 NISCHQ9Y2I1 1504 aa19.46■□□□□ 0.71
SMG6-201ENST00000263073 PELP1Q8IZL8 1130 aaKnown RBP19.16■□□□□ 0.66
SMG6-201ENST00000263073 TTBK1Q5TCY1 1321 aaPredicted RBP19.13■□□□□ 0.65
SMG6-201ENST00000263073 PCGF6Q9BYE7 350 aa19.09■□□□□ 0.65
SMG6-201ENST00000263073 FAM9AQ8IZU1 332 aaPredicted RBP18.94■□□□□ 0.62
SMG6-201ENST00000263073 ERICH6Q7L0X2 663 aa18.71■□□□□ 0.59
SMG6-201ENST00000263073 APLP2Q06481 763 aa18.7■□□□□ 0.58
SMG6-201ENST00000263073 YTHDC1Q96MU7 727 aaKnown RBP18.64■□□□□ 0.57
SMG6-201ENST00000263073 RANGAP1P46060 587 aaPredicted RBP18.62■□□□□ 0.57
SMG6-201ENST00000263073 CENPBP07199 599 aaPredicted RBP18.62■□□□□ 0.57
SMG6-201ENST00000263073 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
SMG6-201ENST00000263073 PPARGC1BQ86YN6 1023 aaKnown RBP18.4■□□□□ 0.54
SMG6-201ENST00000263073 ZEB1P37275 1124 aaPredicted RBP18.32■□□□□ 0.52
SMG6-201ENST00000263073 MYT1Q01538 1121 aa18.24■□□□□ 0.51
SMG6-201ENST00000263073 ATP1B4Q9UN42 357 aaPredicted RBP18.24■□□□□ 0.51
SMG6-201ENST00000263073 TRIM41Q8WV44 630 aa18.2■□□□□ 0.5
SMG6-201ENST00000263073 NEFLP07196 543 aa18.16■□□□□ 0.5
SMG6-201ENST00000263073 UBTFP17480 764 aaKnown RBP18.05■□□□□ 0.48
SMG6-201ENST00000263073 HRCP23327 699 aa18.01■□□□□ 0.47
SMG6-201ENST00000263073 TRIM26Q12899 539 aaPredicted RBP17.89■□□□□ 0.45
SMG6-201ENST00000263073 CNGB1Q14028 1251 aaPredicted RBP17.87■□□□□ 0.45
SMG6-201ENST00000263073 LOC105371045A0A1W2PR82 267 aa17.86■□□□□ 0.45
SMG6-201ENST00000263073 ITGAEP38570 1179 aa17.81■□□□□ 0.44
SMG6-201ENST00000263073 POLR3GLQ9BT43 218 aa17.79■□□□□ 0.44
SMG6-201ENST00000263073 HNRNPUL2Q1KMD3 747 aaKnown RBP17.69■□□□□ 0.42
SMG6-201ENST00000263073 DAXXQ9UER7 740 aaPredicted RBP17.69■□□□□ 0.42
SMG6-201ENST00000263073 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.65■□□□□ 0.42
SMG6-201ENST00000263073 BCANQ96GW7 911 aa17.57■□□□□ 0.4
SMG6-201ENST00000263073 DIEXFQ68CQ4 756 aaKnown RBP17.56■□□□□ 0.4
SMG6-201ENST00000263073 GTF3C3Q9Y5Q9 886 aa17.51■□□□□ 0.39
SMG6-201ENST00000263073 CHIC1Q5VXU3 224 aa17.46■□□□□ 0.39
SMG6-201ENST00000263073 RTL5Q5HYW3 569 aaPredicted RBP17.42■□□□□ 0.38
SMG6-201ENST00000263073 ZNF316A6NFI3 1004 aaPredicted RBP17.35■□□□□ 0.37
SMG6-201ENST00000263073 MYT1LQ9UL68 1186 aa17.31■□□□□ 0.36
SMG6-201ENST00000263073 CLSPNQ9HAW4 1339 aa17.3■□□□□ 0.36
SMG6-201ENST00000263073 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.36
SMG6-201ENST00000263073 NEUROD1Q13562 356 aa17.22■□□□□ 0.35
SMG6-201ENST00000263073 FAM50AQ14320 339 aaKnown RBP17.13■□□□□ 0.33
SMG6-201ENST00000263073 BCL11AQ9H165 835 aa17.09■□□□□ 0.33
SMG6-201ENST00000263073 ACIN1Q9UKV3 1341 aaKnown RBP17.08■□□□□ 0.32
SMG6-201ENST00000263073 CDK11AQ9UQ88 783 aaPredicted RBP17.07■□□□□ 0.32
SMG6-201ENST00000263073 TRIM52Q96A61 297 aa17.02■□□□□ 0.32
SMG6-201ENST00000263073 ZNF326Q5BKZ1 582 aaKnown RBP17.01■□□□□ 0.31
SMG6-201ENST00000263073 NPM2Q86SE8 214 aaKnown RBP16.97■□□□□ 0.31
SMG6-201ENST00000263073 ANP32CO43423 234 aa16.97■□□□□ 0.31
SMG6-201ENST00000263073 EIF5BO60841 1220 aaKnown RBP16.93■□□□□ 0.3
SMG6-201ENST00000263073 FKBP8Q14318 412 aa16.84■□□□□ 0.29
SMG6-201ENST00000263073 ABCC9O60706 1549 aa16.8■□□□□ 0.28
SMG6-201ENST00000263073 ANP32AP39687 249 aaKnown RBP16.78■□□□□ 0.28
SMG6-201ENST00000263073 NBR1Q14596 966 aa16.77■□□□□ 0.28
SMG6-201ENST00000263073 SCAF1Q9H7N4 1312 aaKnown RBP16.77■□□□□ 0.27
SMG6-201ENST00000263073 CANXP27824 592 aaKnown RBP16.76■□□□□ 0.27
SMG6-201ENST00000263073 SLC24A1O60721 1099 aa16.71■□□□□ 0.27
SMG6-201ENST00000263073 ARID3CA6NKF2 412 aa16.71■□□□□ 0.26
SMG6-201ENST00000263073 ARXQ96QS3 562 aa16.69■□□□□ 0.26
SMG6-201ENST00000263073 ZBTB47Q9UFB7 747 aaPredicted RBP16.67■□□□□ 0.26
SMG6-201ENST00000263073 P3H3Q8IVL6 736 aa16.66■□□□□ 0.26
SMG6-201ENST00000263073 SALL2Q9Y467 1007 aaPredicted RBP16.64■□□□□ 0.25
SMG6-201ENST00000263073 IRX6P78412 446 aaPredicted RBP16.63■□□□□ 0.25
SMG6-201ENST00000263073 HNRNPUQ00839 825 aaKnown RBP eCLIP16.59■□□□□ 0.25
SMG6-201ENST00000263073 FAM9BQ8IZU0 186 aa16.59■□□□□ 0.25
SMG6-201ENST00000263073 DDX10Q13206 875 aaKnown RBP16.59■□□□□ 0.25
SMG6-201ENST00000263073 PABPN1Q86U42 306 aaKnown RBP eCLIP16.56■□□□□ 0.24
SMG6-201ENST00000263073 MIER1Q8N108 512 aa16.49■□□□□ 0.23
SMG6-201ENST00000263073 HIRIP3Q9BW71 556 aaPredicted RBP16.49■□□□□ 0.23
SMG6-201ENST00000263073 CCDC180Q9P1Z9 1646 aa16.48■□□□□ 0.23
SMG6-201ENST00000263073 HSP90AA1P07900 732 aaKnown RBP16.45■□□□□ 0.22
SMG6-201ENST00000263073 SENP3-EIF4A1A0A087X0R7 540 aa16.45■□□□□ 0.22
SMG6-201ENST00000263073 FBLN2P98095 1184 aa16.44■□□□□ 0.22
SMG6-201ENST00000263073 ZNF777Q9ULD5 760 aaPredicted RBP16.44■□□□□ 0.22
SMG6-201ENST00000263073 CCDC136Q96JN2 1154 aa16.41■□□□□ 0.22
SMG6-201ENST00000263073 ANP32BQ92688 251 aaKnown RBP16.4■□□□□ 0.22
SMG6-201ENST00000263073 NEFMP07197 916 aa16.34■□□□□ 0.21
SMG6-201ENST00000263073 RTN4Q9NQC3 1192 aaKnown RBP16.33■□□□□ 0.21
SMG6-201ENST00000263073 TONSLQ96HA7 1378 aa16.33■□□□□ 0.2
SMG6-201ENST00000263073 CSRNP3Q8WYN3 585 aa16.33■□□□□ 0.2
SMG6-201ENST00000263073 GLIPR1L2Q4G1C9 344 aa16.32■□□□□ 0.2
SMG6-201ENST00000263073 UPF2Q9HAU5 1272 aaKnown RBP16.29■□□□□ 0.2
SMG6-201ENST00000263073 CHIC2Q9UKJ5 165 aa16.27■□□□□ 0.19
SMG6-201ENST00000263073 MRS2Q9HD23 443 aa16.26■□□□□ 0.19
SMG6-201ENST00000263073 TMC1Q8TDI8 760 aa16.24■□□□□ 0.19
SMG6-201ENST00000263073 ANP32EQ9BTT0 268 aa16.23■□□□□ 0.19
SMG6-201ENST00000263073 CHGAP10645 457 aaKnown RBP16.22■□□□□ 0.19
SMG6-201ENST00000263073 DCAF1Q9Y4B6 1507 aa16.22■□□□□ 0.19
SMG6-201ENST00000263073 SENP3Q9H4L4 574 aaPredicted RBP16.19■□□□□ 0.18
SMG6-201ENST00000263073 KDM2AQ9Y2K7 1162 aa16.18■□□□□ 0.18
SMG6-201ENST00000263073 PLPPR3Q6T4P5 718 aa16.17■□□□□ 0.18
SMG6-201ENST00000263073 ZCCHC6Q5VYS8 1495 aaKnown RBP16.15■□□□□ 0.18
SMG6-201ENST00000263073 LAS1LQ9Y4W2 734 aaKnown RBP16.15■□□□□ 0.18
SMG6-201ENST00000263073 TPRNQ4KMQ1 711 aa16.14■□□□□ 0.17
SMG6-201ENST00000263073 MYO15BQ96JP2 1530 aa16.14■□□□□ 0.17
SMG6-201ENST00000263073 SCRIBQ14160 1630 aa16.14■□□□□ 0.17
SMG6-201ENST00000263073 SUPT16HQ9Y5B9 1047 aaKnown RBP16.13■□□□□ 0.17
SMG6-201ENST00000263073 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.12■□□□□ 0.171e-7■■■□□ 15.8
SMG6-201ENST00000263073 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.11■□□□□ 0.17
SMG6-201ENST00000263073 WDR43Q15061 677 aaKnown RBP eCLIP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms