RNA–Protein interactions for RNA: ENST00000263073.10

SMG6-201, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMG6, Length 5,960 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-201ENST00000263073 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.33□□□□□ -0.124e-7■■■■■ 107.7
SMG6-201ENST00000263073 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.29□□□□□ -0.69e-30■■■■■ 73.4
SMG6-201ENST00000263073 SF3B1O75533 1304 aaKnown RBP eCLIP12.09□□□□□ -0.475e-6■■■■■ 69.9
SMG6-201ENST00000263073 WRNQ14191 1432 aaPredicted RBP eCLIP15.32■□□□□ 0.041e-6■■■■■ 58.5
SMG6-201ENST00000263073 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.75□□□□□ -0.372e-6■■■■■ 54.9
SMG6-201ENST00000263073 MATR3P43243 847 aaKnown RBP eCLIP14.06□□□□□ -0.162e-14■■■■■ 50.7
SMG6-201ENST00000263073 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.88□□□□□ -0.358e-7■■■■■ 32.7
SMG6-201ENST00000263073 GTF2F1P35269 517 aaKnown RBP eCLIP14.2□□□□□ -0.147e-9■■■■■ 32
SMG6-201ENST00000263073 PCBP2Q15366 365 aaKnown RBP eCLIP11.93□□□□□ -0.51e-8■■■■■ 30.8
SMG6-201ENST00000263073 TARDBPQ13148 414 aaKnown RBP eCLIP11.9□□□□□ -0.58e-9■■■■■ 30
SMG6-201ENST00000263073 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.89□□□□□ -0.195e-9■■■■■ 28.9
SMG6-201ENST00000263073 DKC1O60832 514 aaKnown RBP eCLIP13.06□□□□□ -0.323e-6■■■■■ 27.9
SMG6-201ENST00000263073 HNRNPMP52272 730 aaKnown RBP eCLIP14.92□□□□□ -0.029e-7■■■■■ 27.4
SMG6-201ENST00000263073 AQRO60306 1485 aaKnown RBP eCLIP14.18□□□□□ -0.141e-6■■■■□ 26.3
SMG6-201ENST00000263073 QKIQ96PU8 341 aaKnown RBP eCLIP12.19□□□□□ -0.461e-6■■■■□ 26.2
SMG6-201ENST00000263073 AGGF1Q8N302 714 aaeCLIP12.7□□□□□ -0.382e-11■■■■□ 26.1
SMG6-201ENST00000263073 AKAP1Q92667 903 aaKnown RBP eCLIP11.79□□□□□ -0.524e-7■■■■□ 26
SMG6-201ENST00000263073 UPF1Q92900 1129 aaKnown RBP eCLIP11.75□□□□□ -0.532e-7■■■■□ 25.6
SMG6-201ENST00000263073 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.13□□□□□ -0.155e-6■■■■□ 24.1
SMG6-201ENST00000263073 RBFOX2O43251 390 aaKnown RBP eCLIP10.32□□□□□ -0.762e-6■■■■□ 23.3
SMG6-201ENST00000263073 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.04□□□□□ -0.484e-8■■■■□ 21.6
SMG6-201ENST00000263073 PTBP1P26599 531 aaKnown RBP eCLIP10.97□□□□□ -0.652e-6■■■■□ 21
SMG6-201ENST00000263073 HNRNPLP14866 589 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■□ 21
SMG6-201ENST00000263073 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.76□□□□□ -0.212e-6■■■■□ 19.7
SMG6-201ENST00000263073 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.29□□□□□ -0.923e-6■■■■□ 19.4
SMG6-201ENST00000263073 EIF3HO15372 352 aaKnown RBP eCLIP12.84□□□□□ -0.353e-7■■■■□ 19.3
SMG6-201ENST00000263073 ILF3Q12906 894 aaKnown RBP eCLIP11.63□□□□□ -0.551e-7■■■□□ 18.9
SMG6-201ENST00000263073 ZNF622Q969S3 477 aaKnown RBP eCLIP13.56□□□□□ -0.246e-6■■■□□ 17.8
SMG6-201ENST00000263073 U2AF2P26368 475 aaKnown RBP eCLIP13.86□□□□□ -0.197e-7■■■□□ 15.9
SMG6-201ENST00000263073 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.12■□□□□ 0.171e-7■■■□□ 15.8
SMG6-201ENST00000263073 NCBP2P52298 156 aaKnown RBP eCLIP11.81□□□□□ -0.522e-6■■■□□ 15.4
SMG6-201ENST00000263073 FXR2P51116 673 aaKnown RBP eCLIP12.48□□□□□ -0.412e-6■■■□□ 14.9
SMG6-201ENST00000263073 PPIGQ13427 754 aaKnown RBP eCLIP11.59□□□□□ -0.552e-6■■□□□ 12.8
SMG6-201ENST00000263073 HNRNPCP07910 306 aaKnown RBP eCLIP12.89□□□□□ -0.353e-7■■□□□ 12.3
SMG6-201ENST00000263073 PRPF4O43172 522 aaKnown RBP eCLIP12.67□□□□□ -0.384e-9■■□□□ 12.1
SMG6-201ENST00000263073 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.63□□□□□ -0.395e-7■□□□□ 10.8
SMG6-201ENST00000263073 DDX3XO00571 662 aaKnown RBP eCLIP12.38□□□□□ -0.434e-10■□□□□ 10.6
SMG6-201ENST00000263073 HLTFQ14527 1009 aaKnown RBP eCLIP14□□□□□ -0.176e-12■□□□□ 8.9
SMG6-201ENST00000263073 SAFBQ15424 915 aaKnown RBP eCLIP14.45□□□□□ -0.15e-6■□□□□ 8
Retrieved 39 of 39 RNA–protein pairs in 9.4 ms