RNA–Protein interactions for RNA: ENST00000238616.9

NEK9-201, Transcript of NIMA related kinase 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEK9, Length 8,310 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-201ENST00000238616 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.25
NEK9-201ENST00000238616 EHMT2Q96KQ7 1210 aa21.53■■□□□ 1.04
NEK9-201ENST00000238616 PELP1Q8IZL8 1130 aaKnown RBP21.24■□□□□ 0.99
NEK9-201ENST00000238616 SUPT5HO00267 1087 aaKnown RBP21.23■□□□□ 0.99
NEK9-201ENST00000238616 SHROOM4Q9ULL8 1493 aa20.78■□□□□ 0.92
NEK9-201ENST00000238616 TTBK1Q5TCY1 1321 aaPredicted RBP20.76■□□□□ 0.91
NEK9-201ENST00000238616 APLP2Q06481 763 aa20.76■□□□□ 0.91
NEK9-201ENST00000238616 ERICH6Q7L0X2 663 aa20.7■□□□□ 0.9
NEK9-201ENST00000238616 FAM9AQ8IZU1 332 aaPredicted RBP20.63■□□□□ 0.89
NEK9-201ENST00000238616 RANGAP1P46060 587 aaPredicted RBP20.48■□□□□ 0.87
NEK9-201ENST00000238616 ATP1B4Q9UN42 357 aaPredicted RBP20.41■□□□□ 0.86
NEK9-201ENST00000238616 CCER1Q8TC90 406 aaPredicted RBP20.33■□□□□ 0.84
NEK9-201ENST00000238616 PCGF6Q9BYE7 350 aa20.21■□□□□ 0.83
NEK9-201ENST00000238616 MYT1Q01538 1121 aa20.19■□□□□ 0.82
NEK9-201ENST00000238616 CENPBP07199 599 aaPredicted RBP19.93■□□□□ 0.78
NEK9-201ENST00000238616 YTHDC1Q96MU7 727 aaKnown RBP19.91■□□□□ 0.78
NEK9-201ENST00000238616 NEFLP07196 543 aa19.9■□□□□ 0.78
NEK9-201ENST00000238616 CHIC1Q5VXU3 224 aa19.87■□□□□ 0.77
NEK9-201ENST00000238616 MYT1LQ9UL68 1186 aa19.87■□□□□ 0.77
NEK9-201ENST00000238616 DAXXQ9UER7 740 aaPredicted RBP19.79■□□□□ 0.76
NEK9-201ENST00000238616 POLR3GLQ9BT43 218 aa19.74■□□□□ 0.75
NEK9-201ENST00000238616 CNGB1Q14028 1251 aaPredicted RBP19.68■□□□□ 0.74
NEK9-201ENST00000238616 UBTFP17480 764 aaKnown RBP19.65■□□□□ 0.74
NEK9-201ENST00000238616 SLC4A1APQ9BWU0 796 aaKnown RBP19.63■□□□□ 0.73
NEK9-201ENST00000238616 PPARGC1BQ86YN6 1023 aaKnown RBP19.51■□□□□ 0.71
NEK9-201ENST00000238616 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.47■□□□□ 0.71
NEK9-201ENST00000238616 HNRNPUL2Q1KMD3 747 aaKnown RBP19.47■□□□□ 0.71
NEK9-201ENST00000238616 TRIM41Q8WV44 630 aa19.46■□□□□ 0.71
NEK9-201ENST00000238616 NISCHQ9Y2I1 1504 aa19.42■□□□□ 0.7
NEK9-201ENST00000238616 ITGAEP38570 1179 aa19.39■□□□□ 0.69
NEK9-201ENST00000238616 ZEB1P37275 1124 aaPredicted RBP19.39■□□□□ 0.69
NEK9-201ENST00000238616 CLSPNQ9HAW4 1339 aa19.28■□□□□ 0.68
NEK9-201ENST00000238616 ZNF316A6NFI3 1004 aaPredicted RBP19.27■□□□□ 0.68
NEK9-201ENST00000238616 SLC24A1O60721 1099 aa19.19■□□□□ 0.66
NEK9-201ENST00000238616 BCL11AQ9H165 835 aa19.17■□□□□ 0.66
NEK9-201ENST00000238616 RTL5Q5HYW3 569 aaPredicted RBP19■□□□□ 0.63
NEK9-201ENST00000238616 ZBTB47Q9UFB7 747 aaPredicted RBP18.86■□□□□ 0.61
NEK9-201ENST00000238616 BCANQ96GW7 911 aa18.82■□□□□ 0.6
NEK9-201ENST00000238616 FAM50AQ14320 339 aaKnown RBP18.67■□□□□ 0.58
NEK9-201ENST00000238616 ZNF326Q5BKZ1 582 aaKnown RBP18.65■□□□□ 0.58
NEK9-201ENST00000238616 TRIM52Q96A61 297 aa18.64■□□□□ 0.58
NEK9-201ENST00000238616 CANXP27824 592 aaKnown RBP18.64■□□□□ 0.57
NEK9-201ENST00000238616 TRIM26Q12899 539 aaPredicted RBP18.64■□□□□ 0.57
NEK9-201ENST00000238616 PLPPR3Q6T4P5 718 aa18.63■□□□□ 0.57
NEK9-201ENST00000238616 NEUROD1Q13562 356 aa18.6■□□□□ 0.57
NEK9-201ENST00000238616 HRCP23327 699 aa18.56■□□□□ 0.56
NEK9-201ENST00000238616 NEFMP07197 916 aa18.48■□□□□ 0.55
NEK9-201ENST00000238616 FBLN2P98095 1184 aa18.46■□□□□ 0.55
NEK9-201ENST00000238616 LOC105371045A0A1W2PR82 267 aa18.43■□□□□ 0.54
NEK9-201ENST00000238616 DIEXFQ68CQ4 756 aaKnown RBP18.41■□□□□ 0.54
NEK9-201ENST00000238616 CDK11AQ9UQ88 783 aaPredicted RBP18.37■□□□□ 0.53
NEK9-201ENST00000238616 HSP90AA1P07900 732 aaKnown RBP18.33■□□□□ 0.52
NEK9-201ENST00000238616 A0A0G2JS52 829 aa18.32■□□□□ 0.52
NEK9-201ENST00000238616 NPM2Q86SE8 214 aaKnown RBP18.32■□□□□ 0.52
NEK9-201ENST00000238616 ANP32CO43423 234 aa18.29■□□□□ 0.52
NEK9-201ENST00000238616 SCAF1Q9H7N4 1312 aaKnown RBP18.29■□□□□ 0.52
NEK9-201ENST00000238616 EIF5BO60841 1220 aaKnown RBP18.26■□□□□ 0.51
NEK9-201ENST00000238616 ANP32BQ92688 251 aaKnown RBP18.26■□□□□ 0.51
NEK9-201ENST00000238616 ARID3CA6NKF2 412 aa18.25■□□□□ 0.51
NEK9-201ENST00000238616 ESF1Q9H501 851 aaKnown RBP18.23■□□□□ 0.51
NEK9-201ENST00000238616 ARXQ96QS3 562 aa18.18■□□□□ 0.5
NEK9-201ENST00000238616 STAG3Q9UJ98 1225 aa18.18■□□□□ 0.5
NEK9-201ENST00000238616 PLEKHG5O94827 1062 aa18.17■□□□□ 0.5
NEK9-201ENST00000238616 ANP32AP39687 249 aaKnown RBP18.15■□□□□ 0.5
NEK9-201ENST00000238616 CDK11BP21127 795 aaKnown RBP18.14■□□□□ 0.49
NEK9-201ENST00000238616 TULP1O00294 542 aaPredicted RBP18.14■□□□□ 0.49
NEK9-201ENST00000238616 CHGAP10645 457 aaKnown RBP18.1■□□□□ 0.49
NEK9-201ENST00000238616 ZNF777Q9ULD5 760 aaPredicted RBP18.07■□□□□ 0.48
NEK9-201ENST00000238616 GTF3C3Q9Y5Q9 886 aa18.06■□□□□ 0.48
NEK9-201ENST00000238616 SALL2Q9Y467 1007 aaPredicted RBP18.03■□□□□ 0.48
NEK9-201ENST00000238616 SENP3Q9H4L4 574 aaPredicted RBP18.02■□□□□ 0.47
NEK9-201ENST00000238616 P3H3Q8IVL6 736 aa17.99■□□□□ 0.47
NEK9-201ENST00000238616 UPF2Q9HAU5 1272 aaKnown RBP17.99■□□□□ 0.47
NEK9-201ENST00000238616 ZBTB7CA1YPR0 619 aa17.99■□□□□ 0.47
NEK9-201ENST00000238616 PABPN1Q86U42 306 aaKnown RBP eCLIP17.95■□□□□ 0.46
NEK9-201ENST00000238616 NCBP3Q53F19 620 aaKnown RBP17.94■□□□□ 0.46
NEK9-201ENST00000238616 NBR1Q14596 966 aa17.89■□□□□ 0.45
NEK9-201ENST00000238616 C14orf37Q86TY3 774 aa17.87■□□□□ 0.45
NEK9-201ENST00000238616 TPRNQ4KMQ1 711 aa17.83■□□□□ 0.44
NEK9-201ENST00000238616 GLIPR1L2Q4G1C9 344 aa17.81■□□□□ 0.44
NEK9-201ENST00000238616 TAOK2Q9UL54 1235 aa17.79■□□□□ 0.44
NEK9-201ENST00000238616 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.442e-6■■□□□ 13.5
NEK9-201ENST00000238616 FAM9BQ8IZU0 186 aa17.78■□□□□ 0.44
NEK9-201ENST00000238616 HAP1P54257 671 aaPredicted RBP17.72■□□□□ 0.43
NEK9-201ENST00000238616 FKBP8Q14318 412 aa17.72■□□□□ 0.43
NEK9-201ENST00000238616 MYH16Q9H6N6 1097 aa17.7■□□□□ 0.42
NEK9-201ENST00000238616 NPHP1O15259 732 aa17.7■□□□□ 0.42
NEK9-201ENST00000238616 NPM1P06748 294 aaKnown RBP eCLIP17.68■□□□□ 0.42
NEK9-201ENST00000238616 ABCC9O60706 1549 aa17.68■□□□□ 0.42
NEK9-201ENST00000238616 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.67■□□□□ 0.42
NEK9-201ENST00000238616 HNRNPUQ00839 825 aaKnown RBP eCLIP17.67■□□□□ 0.42
NEK9-201ENST00000238616 WDR43Q15061 677 aaKnown RBP eCLIP17.65■□□□□ 0.42
NEK9-201ENST00000238616 KDM2AQ9Y2K7 1162 aa17.62■□□□□ 0.41
NEK9-201ENST00000238616 TMC1Q8TDI8 760 aa17.62■□□□□ 0.41
NEK9-201ENST00000238616 CCDC136Q96JN2 1154 aa17.59■□□□□ 0.41
NEK9-201ENST00000238616 ZRSR1Q15695 479 aaKnown RBP17.59■□□□□ 0.41
NEK9-201ENST00000238616 TONSLQ96HA7 1378 aa17.57■□□□□ 0.4
NEK9-201ENST00000238616 CLSTN1O94985 981 aa17.57■□□□□ 0.4
NEK9-201ENST00000238616 NCLP19338 710 aaKnown RBP17.55■□□□□ 0.4
NEK9-201ENST00000238616 TRIM44Q96DX7 344 aaPredicted RBP17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 227.3 ms