RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 DCAF8L2P0C7V8 631 aa22.99■■□□□ 1.27
NEK4-201ENST00000233027 SUPT5HO00267 1087 aaKnown RBP22.1■■□□□ 1.13
NEK4-201ENST00000233027 SHROOM4Q9ULL8 1493 aa21.71■■□□□ 1.07
NEK4-201ENST00000233027 EHMT2Q96KQ7 1210 aa21.65■■□□□ 1.06
NEK4-201ENST00000233027 NISCHQ9Y2I1 1504 aa21.58■■□□□ 1.04
NEK4-201ENST00000233027 PELP1Q8IZL8 1130 aaKnown RBP21.14■□□□□ 0.97
NEK4-201ENST00000233027 TTBK1Q5TCY1 1321 aaPredicted RBP20.94■□□□□ 0.94
NEK4-201ENST00000233027 PCGF6Q9BYE7 350 aa20.94■□□□□ 0.94
NEK4-201ENST00000233027 FAM9AQ8IZU1 332 aaPredicted RBP20.91■□□□□ 0.94
NEK4-201ENST00000233027 APLP2Q06481 763 aa20.87■□□□□ 0.93
NEK4-201ENST00000233027 RANGAP1P46060 587 aaPredicted RBP20.54■□□□□ 0.88
NEK4-201ENST00000233027 CENPBP07199 599 aaPredicted RBP20.5■□□□□ 0.87
NEK4-201ENST00000233027 CCER1Q8TC90 406 aaPredicted RBP20.46■□□□□ 0.87
NEK4-201ENST00000233027 ERICH6Q7L0X2 663 aa20.46■□□□□ 0.87
NEK4-201ENST00000233027 ZEB1P37275 1124 aaPredicted RBP20.39■□□□□ 0.85
NEK4-201ENST00000233027 TRIM41Q8WV44 630 aa20.34■□□□□ 0.85
NEK4-201ENST00000233027 YTHDC1Q96MU7 727 aaKnown RBP20.3■□□□□ 0.84
NEK4-201ENST00000233027 ATP1B4Q9UN42 357 aaPredicted RBP20.24■□□□□ 0.83
NEK4-201ENST00000233027 PPARGC1BQ86YN6 1023 aaKnown RBP20.16■□□□□ 0.82
NEK4-201ENST00000233027 UBTFP17480 764 aaKnown RBP20.13■□□□□ 0.81
NEK4-201ENST00000233027 NEFLP07196 543 aa20.02■□□□□ 0.8
NEK4-201ENST00000233027 TRIM26Q12899 539 aaPredicted RBP19.87■□□□□ 0.77
NEK4-201ENST00000233027 MYT1Q01538 1121 aa19.83■□□□□ 0.77
NEK4-201ENST00000233027 HRCP23327 699 aa19.83■□□□□ 0.76
NEK4-201ENST00000233027 LOC105371045A0A1W2PR82 267 aa19.71■□□□□ 0.75
NEK4-201ENST00000233027 ITGAEP38570 1179 aa19.67■□□□□ 0.74
NEK4-201ENST00000233027 POLR3GLQ9BT43 218 aa19.58■□□□□ 0.73
NEK4-201ENST00000233027 HNRNPUL2Q1KMD3 747 aaKnown RBP19.55■□□□□ 0.72
NEK4-201ENST00000233027 CNGB1Q14028 1251 aaPredicted RBP19.51■□□□□ 0.71
NEK4-201ENST00000233027 CHIC1Q5VXU3 224 aa19.49■□□□□ 0.71
NEK4-201ENST00000233027 DAXXQ9UER7 740 aaPredicted RBP19.46■□□□□ 0.71
NEK4-201ENST00000233027 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.42■□□□□ 0.7
NEK4-201ENST00000233027 DIEXFQ68CQ4 756 aaKnown RBP19.33■□□□□ 0.68
NEK4-201ENST00000233027 MYT1LQ9UL68 1186 aa19.31■□□□□ 0.68
NEK4-201ENST00000233027 BCANQ96GW7 911 aa19.13■□□□□ 0.65
NEK4-201ENST00000233027 SLC4A1APQ9BWU0 796 aaKnown RBP19.1■□□□□ 0.65
NEK4-201ENST00000233027 GTF3C3Q9Y5Q9 886 aa19.1■□□□□ 0.65
NEK4-201ENST00000233027 RTL5Q5HYW3 569 aaPredicted RBP19.09■□□□□ 0.65
NEK4-201ENST00000233027 FAM50AQ14320 339 aaKnown RBP19.07■□□□□ 0.64
NEK4-201ENST00000233027 ZNF316A6NFI3 1004 aaPredicted RBP19.07■□□□□ 0.64
NEK4-201ENST00000233027 NEUROD1Q13562 356 aa19.04■□□□□ 0.64
NEK4-201ENST00000233027 CLSPNQ9HAW4 1339 aa19.03■□□□□ 0.64
NEK4-201ENST00000233027 TRIM52Q96A61 297 aa18.95■□□□□ 0.62
NEK4-201ENST00000233027 ANP32CO43423 234 aa18.82■□□□□ 0.6
NEK4-201ENST00000233027 ZNF326Q5BKZ1 582 aaKnown RBP18.81■□□□□ 0.6
NEK4-201ENST00000233027 CDK11AQ9UQ88 783 aaPredicted RBP18.79■□□□□ 0.6
NEK4-201ENST00000233027 ACIN1Q9UKV3 1341 aaKnown RBP18.73■□□□□ 0.59
NEK4-201ENST00000233027 PABPN1Q86U42 306 aaKnown RBP eCLIP18.72■□□□□ 0.59
NEK4-201ENST00000233027 BCL11AQ9H165 835 aa18.63■□□□□ 0.57
NEK4-201ENST00000233027 ABCC9O60706 1549 aa18.58■□□□□ 0.57
NEK4-201ENST00000233027 P3H3Q8IVL6 736 aa18.55■□□□□ 0.56
NEK4-201ENST00000233027 CANXP27824 592 aaKnown RBP18.55■□□□□ 0.56
NEK4-201ENST00000233027 ARID3CA6NKF2 412 aa18.53■□□□□ 0.56
NEK4-201ENST00000233027 NPM2Q86SE8 214 aaKnown RBP18.53■□□□□ 0.56
NEK4-201ENST00000233027 ZBTB47Q9UFB7 747 aaPredicted RBP18.51■□□□□ 0.55
NEK4-201ENST00000233027 ANP32AP39687 249 aaKnown RBP18.48■□□□□ 0.55
NEK4-201ENST00000233027 FKBP8Q14318 412 aa18.47■□□□□ 0.55
NEK4-201ENST00000233027 FBLN2P98095 1184 aa18.45■□□□□ 0.54
NEK4-201ENST00000233027 SLC24A1O60721 1099 aa18.45■□□□□ 0.54
NEK4-201ENST00000233027 CSRNP3Q8WYN3 585 aa18.39■□□□□ 0.53
NEK4-201ENST00000233027 ZNF777Q9ULD5 760 aaPredicted RBP18.35■□□□□ 0.53
NEK4-201ENST00000233027 HNRNPUQ00839 825 aaKnown RBP eCLIP18.3■□□□□ 0.52
NEK4-201ENST00000233027 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
NEK4-201ENST00000233027 FAM9BQ8IZU0 186 aa18.29■□□□□ 0.52
NEK4-201ENST00000233027 EIF5BO60841 1220 aaKnown RBP18.27■□□□□ 0.52
NEK4-201ENST00000233027 NEFMP07197 916 aa18.26■□□□□ 0.51
NEK4-201ENST00000233027 SALL2Q9Y467 1007 aaPredicted RBP18.25■□□□□ 0.51
NEK4-201ENST00000233027 TONSLQ96HA7 1378 aa18.24■□□□□ 0.51
NEK4-201ENST00000233027 DCAF1Q9Y4B6 1507 aa18.24■□□□□ 0.51
NEK4-201ENST00000233027 SCAF1Q9H7N4 1312 aaKnown RBP18.23■□□□□ 0.51
NEK4-201ENST00000233027 NBR1Q14596 966 aa18.22■□□□□ 0.51
NEK4-201ENST00000233027 IRX6P78412 446 aaPredicted RBP18.15■□□□□ 0.5
NEK4-201ENST00000233027 HSP90AA1P07900 732 aaKnown RBP18.13■□□□□ 0.49
NEK4-201ENST00000233027 MIER1Q8N108 512 aa18.13■□□□□ 0.49
NEK4-201ENST00000233027 SCRIBQ14160 1630 aa18.13■□□□□ 0.49
NEK4-201ENST00000233027 CCDC136Q96JN2 1154 aa18.1■□□□□ 0.49
NEK4-201ENST00000233027 ARXQ96QS3 562 aa18.1■□□□□ 0.49
NEK4-201ENST00000233027 HIRIP3Q9BW71 556 aaPredicted RBP18.1■□□□□ 0.49
NEK4-201ENST00000233027 CHIC2Q9UKJ5 165 aa18.1■□□□□ 0.49
NEK4-201ENST00000233027 ANP32BQ92688 251 aaKnown RBP18.08■□□□□ 0.49
NEK4-201ENST00000233027 CHGAP10645 457 aaKnown RBP18.08■□□□□ 0.48
NEK4-201ENST00000233027 UPF2Q9HAU5 1272 aaKnown RBP18.06■□□□□ 0.48
NEK4-201ENST00000233027 TMC1Q8TDI8 760 aa18.03■□□□□ 0.48
NEK4-201ENST00000233027 MRS2Q9HD23 443 aa18.01■□□□□ 0.47
NEK4-201ENST00000233027 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.97■□□□□ 0.472e-6■■□□□ 11.6
NEK4-201ENST00000233027 MYO15BQ96JP2 1530 aa17.97■□□□□ 0.47
NEK4-201ENST00000233027 KDM2AQ9Y2K7 1162 aa17.97■□□□□ 0.47
NEK4-201ENST00000233027 WDR43Q15061 677 aaKnown RBP eCLIP17.93■□□□□ 0.46
NEK4-201ENST00000233027 PLPPR3Q6T4P5 718 aa17.93■□□□□ 0.46
NEK4-201ENST00000233027 STAG3Q9UJ98 1225 aa17.92■□□□□ 0.46
NEK4-201ENST00000233027 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.9■□□□□ 0.46
NEK4-201ENST00000233027 SENP3-EIF4A1A0A087X0R7 540 aa17.9■□□□□ 0.46
NEK4-201ENST00000233027 ZCCHC6Q5VYS8 1495 aaKnown RBP17.86■□□□□ 0.45
NEK4-201ENST00000233027 ESF1Q9H501 851 aaKnown RBP17.84■□□□□ 0.45
NEK4-201ENST00000233027 GLIPR1L2Q4G1C9 344 aa17.83■□□□□ 0.45
NEK4-201ENST00000233027 RRP7BPQ9NSQ0 103 aa17.81■□□□□ 0.44
NEK4-201ENST00000233027 CLIP1P30622 1438 aa17.81■□□□□ 0.44
NEK4-201ENST00000233027 MTUS2Q5JR59 1369 aa17.8■□□□□ 0.44
NEK4-201ENST00000233027 SENP3Q9H4L4 574 aaPredicted RBP17.8■□□□□ 0.44
NEK4-201ENST00000233027 EIF4G2P78344 907 aaKnown RBP eCLIP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms