RNA–Protein interactions for RNA: ENST00000216774.10

SRP54-201, Transcript of signal recognition particle 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRP54, Length 2,279 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-201ENST00000216774 NISCHQ9Y2I1 1504 aa27.48■■□□□ 1.99
SRP54-201ENST00000216774 CCDC180Q9P1Z9 1646 aa23.41■■□□□ 1.34
SRP54-201ENST00000216774 ZCCHC6Q5VYS8 1495 aaKnown RBP23.29■■□□□ 1.32
SRP54-201ENST00000216774 SHROOM4Q9ULL8 1493 aa23.26■■□□□ 1.31
SRP54-201ENST00000216774 SUPT5HO00267 1087 aaKnown RBP22.87■■□□□ 1.25
SRP54-201ENST00000216774 DCAF1Q9Y4B6 1507 aa22.66■■□□□ 1.22
SRP54-201ENST00000216774 DCAF8L2P0C7V8 631 aa22.48■■□□□ 1.19
SRP54-201ENST00000216774 CHIC1Q5VXU3 224 aa22.39■■□□□ 1.17
SRP54-201ENST00000216774 MYO15BQ96JP2 1530 aa22.3■■□□□ 1.16
SRP54-201ENST00000216774 ABCC9O60706 1549 aa22■■□□□ 1.11
SRP54-201ENST00000216774 HRCP23327 699 aa21.89■■□□□ 1.09
SRP54-201ENST00000216774 SCRIBQ14160 1630 aa21.79■■□□□ 1.08
SRP54-201ENST00000216774 RSF1Q96T23 1441 aaPredicted RBP21.74■■□□□ 1.07
SRP54-201ENST00000216774 PCGF6Q9BYE7 350 aa21.71■■□□□ 1.07
SRP54-201ENST00000216774 LOC105371045A0A1W2PR82 267 aa21.62■■□□□ 1.05
SRP54-201ENST00000216774 NACADO15069 1562 aa21.6■■□□□ 1.05
SRP54-201ENST00000216774 RB1CC1Q8TDY2 1594 aa21.58■■□□□ 1.05
SRP54-201ENST00000216774 TRIM26Q12899 539 aaPredicted RBP21.4■■□□□ 1.02
SRP54-201ENST00000216774 TRIM41Q8WV44 630 aa21.39■■□□□ 1.02
SRP54-201ENST00000216774 CECR2Q9BXF3 1484 aa21.33■■□□□ 1
SRP54-201ENST00000216774 MROH2BQ7Z745 1585 aa21.31■■□□□ 1
SRP54-201ENST00000216774 PPARGC1BQ86YN6 1023 aaKnown RBP21.25■□□□□ 0.99
SRP54-201ENST00000216774 WIZO95785 1651 aa21.19■□□□□ 0.98
SRP54-201ENST00000216774 BAZ1AQ9NRL2 1556 aaPredicted RBP21.16■□□□□ 0.98
SRP54-201ENST00000216774 FAM9AQ8IZU1 332 aaPredicted RBP21.08■□□□□ 0.97
SRP54-201ENST00000216774 ZEB1P37275 1124 aaPredicted RBP21.06■□□□□ 0.96
SRP54-201ENST00000216774 EIF4G1Q04637 1599 aaKnown RBP21.04■□□□□ 0.96
SRP54-201ENST00000216774 TOP2AP11388 1531 aaKnown RBP20.95■□□□□ 0.94
SRP54-201ENST00000216774 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
SRP54-201ENST00000216774 UNC13AQ9UPW8 1703 aa20.82■□□□□ 0.92
SRP54-201ENST00000216774 SMARCA2P51531 1590 aa20.8■□□□□ 0.92
SRP54-201ENST00000216774 CCDC88BA6NC98 1476 aa20.8■□□□□ 0.92
SRP54-201ENST00000216774 EHMT2Q96KQ7 1210 aa20.79■□□□□ 0.92
SRP54-201ENST00000216774 ABCC8Q09428 1581 aa20.71■□□□□ 0.91
SRP54-201ENST00000216774 WRNQ14191 1432 aaPredicted RBP eCLIP20.65■□□□□ 0.9
SRP54-201ENST00000216774 EEA1Q15075 1411 aa20.63■□□□□ 0.89
SRP54-201ENST00000216774 PEG3Q9GZU2 1588 aa20.58■□□□□ 0.88
SRP54-201ENST00000216774 BICRAQ9NZM4 1560 aa20.57■□□□□ 0.88
SRP54-201ENST00000216774 TNIKQ9UKE5 1360 aa20.56■□□□□ 0.88
SRP54-201ENST00000216774 CEP162Q5TB80 1403 aa20.55■□□□□ 0.88
SRP54-201ENST00000216774 SOGA1O94964 1423 aa20.54■□□□□ 0.88
SRP54-201ENST00000216774 CSRNP3Q8WYN3 585 aa20.47■□□□□ 0.87
SRP54-201ENST00000216774 GOLGA3Q08378 1498 aa20.42■□□□□ 0.86
SRP54-201ENST00000216774 CCER1Q8TC90 406 aaPredicted RBP20.42■□□□□ 0.86
SRP54-201ENST00000216774 RUSC2Q8N2Y8 1516 aa20.41■□□□□ 0.86
SRP54-201ENST00000216774 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.41■□□□□ 0.86
SRP54-201ENST00000216774 PABPN1Q86U42 306 aaKnown RBP eCLIP20.4■□□□□ 0.86
SRP54-201ENST00000216774 ATAD2BQ9ULI0 1458 aa20.33■□□□□ 0.84
SRP54-201ENST00000216774 UBTFP17480 764 aaKnown RBP20.33■□□□□ 0.84
SRP54-201ENST00000216774 KIF21BO75037 1637 aa20.32■□□□□ 0.84
SRP54-201ENST00000216774 CEP164Q9UPV0 1460 aa20.31■□□□□ 0.84
SRP54-201ENST00000216774 SYNJ1O43426 1573 aa20.31■□□□□ 0.84
SRP54-201ENST00000216774 BAZ1BQ9UIG0 1483 aaKnown RBP20.27■□□□□ 0.84
SRP54-201ENST00000216774 TTBK1Q5TCY1 1321 aaPredicted RBP20.19■□□□□ 0.82
SRP54-201ENST00000216774 SCAF1Q9H7N4 1312 aaKnown RBP20.16■□□□□ 0.82
SRP54-201ENST00000216774 CLIP1P30622 1438 aa20.15■□□□□ 0.82
SRP54-201ENST00000216774 TOP2BQ02880 1626 aa20.12■□□□□ 0.81
SRP54-201ENST00000216774 VPS8Q8N3P4 1428 aa20.11■□□□□ 0.81
SRP54-201ENST00000216774 DIEXFQ68CQ4 756 aaKnown RBP20.09■□□□□ 0.81
SRP54-201ENST00000216774 RAPGEF2Q9Y4G8 1499 aa20.07■□□□□ 0.8
SRP54-201ENST00000216774 BIVM-ERCC5R4GMW8 1640 aa20.06■□□□□ 0.8
SRP54-201ENST00000216774 PELP1Q8IZL8 1130 aaKnown RBP20.04■□□□□ 0.8
SRP54-201ENST00000216774 ACIN1Q9UKV3 1341 aaKnown RBP20■□□□□ 0.79
SRP54-201ENST00000216774 HMGXB3Q12766 1538 aa20■□□□□ 0.79
SRP54-201ENST00000216774 ERICH3Q5RHP9 1530 aa19.99■□□□□ 0.79
SRP54-201ENST00000216774 NCAPD3P42695 1498 aa19.95■□□□□ 0.78
SRP54-201ENST00000216774 APLP2Q06481 763 aa19.95■□□□□ 0.78
SRP54-201ENST00000216774 ZNF316A6NFI3 1004 aaPredicted RBP19.95■□□□□ 0.78
SRP54-201ENST00000216774 PRXQ9BXM0 1461 aa19.94■□□□□ 0.78
SRP54-201ENST00000216774 CENPBP07199 599 aaPredicted RBP19.92■□□□□ 0.78
SRP54-201ENST00000216774 NEUROD1Q13562 356 aa19.9■□□□□ 0.78
SRP54-201ENST00000216774 HNRNPUL2Q1KMD3 747 aaKnown RBP19.89■□□□□ 0.77
SRP54-201ENST00000216774 CUX1P39880 1505 aa19.85■□□□□ 0.77
SRP54-201ENST00000216774 ARAP1Q96P48 1450 aa19.82■□□□□ 0.76
SRP54-201ENST00000216774 KIF27Q86VH2 1401 aa19.81■□□□□ 0.76
SRP54-201ENST00000216774 CFTRP13569 1480 aa19.81■□□□□ 0.76
SRP54-201ENST00000216774 CLSPNQ9HAW4 1339 aa19.77■□□□□ 0.75
SRP54-201ENST00000216774 RANGAP1P46060 587 aaPredicted RBP19.76■□□□□ 0.75
SRP54-201ENST00000216774 GTF3C3Q9Y5Q9 886 aa19.72■□□□□ 0.75
SRP54-201ENST00000216774 PRDM2Q13029 1718 aa19.71■□□□□ 0.75
SRP54-201ENST00000216774 RRBP1Q9P2E9 1410 aaKnown RBP19.68■□□□□ 0.74
SRP54-201ENST00000216774 DHX57Q6P158 1386 aaKnown RBP19.64■□□□□ 0.74
SRP54-201ENST00000216774 ARHGAP35Q9NRY4 1499 aa19.63■□□□□ 0.73
SRP54-201ENST00000216774 KANK4Q5T7N3 995 aaPredicted RBP19.63■□□□□ 0.73
SRP54-201ENST00000216774 CUX2O14529 1486 aa19.62■□□□□ 0.73
SRP54-201ENST00000216774 MIER1Q8N108 512 aa19.6■□□□□ 0.73
SRP54-201ENST00000216774 IGF1RP08069 1367 aa19.55■□□□□ 0.72
SRP54-201ENST00000216774 CCNB3Q8WWL7 1395 aa19.55■□□□□ 0.72
SRP54-201ENST00000216774 MAP3K1Q13233 1512 aa19.55■□□□□ 0.72
SRP54-201ENST00000216774 CADPSQ9ULU8 1353 aa19.54■□□□□ 0.72
SRP54-201ENST00000216774 YTHDC1Q96MU7 727 aaKnown RBP19.5■□□□□ 0.71
SRP54-201ENST00000216774 TIAM1Q13009 1591 aa19.48■□□□□ 0.71
SRP54-201ENST00000216774 FGD5Q6ZNL6 1462 aa19.47■□□□□ 0.71
SRP54-201ENST00000216774 CARMIL1Q5VZK9 1371 aa19.46■□□□□ 0.71
SRP54-201ENST00000216774 FHAD1B1AJZ9 1412 aa19.39■□□□□ 0.69
SRP54-201ENST00000216774 LRRC9Q6ZRR7 1453 aa19.39■□□□□ 0.69
SRP54-201ENST00000216774 CFAP43Q8NDM7 1665 aa19.36■□□□□ 0.69
SRP54-201ENST00000216774 RAB3GAP2Q9H2M9 1393 aa19.34■□□□□ 0.69
SRP54-201ENST00000216774 FANCD2Q9BXW9 1451 aa19.34■□□□□ 0.69
SRP54-201ENST00000216774 CC2D2AQ9P2K1 1620 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms