RNA–Protein interactions for RNA: ENSMUST00000139443.7

Hmgb1-208, Transcript of High mobility group protein B1, mousemouse

TSL 2 BASIC

Gene Hmgb1, Length 923 nt, Biotype protein coding, Subcellular localisation Axon, Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1-208ENSMUST00000139443 Gm35339A0A140LHH9 1649 aa35.32■■■■□ 3.24
Hmgb1-208ENSMUST00000139443 NischQ80TM9 1593 aa34.83■■■■□ 3.17
Hmgb1-208ENSMUST00000139443 Abcc8B2RUS7 1588 aa33.67■■■□□ 2.98
Hmgb1-208ENSMUST00000139443 Abcc9P70170 1546 aa33.66■■■□□ 2.98
Hmgb1-208ENSMUST00000139443 ScribQ80U72 1612 aa32.54■■■□□ 2.8
Hmgb1-208ENSMUST00000139443 NacadQ5SWP3 1504 aa31.56■■■□□ 2.64
Hmgb1-208ENSMUST00000139443 Kdm5dQ62240 1548 aa31.47■■■□□ 2.63
Hmgb1-208ENSMUST00000139443 Dcaf1Q80TR8 1506 aa30.95■■■□□ 2.55
Hmgb1-208ENSMUST00000139443 Sycp2Q9CUU3 1500 aa30.93■■■□□ 2.54
Hmgb1-208ENSMUST00000139443 BicraF8VPZ9 1578 aa30.48■■■□□ 2.47
Hmgb1-208ENSMUST00000139443 Rb1cc1Q9ESK9 1588 aa30.37■■■□□ 2.45
Hmgb1-208ENSMUST00000139443 Rhox8Q6VSS7 320 aa30.05■■■□□ 2.4
Hmgb1-208ENSMUST00000139443 Baz1aO88379 1555 aa29.91■■■□□ 2.38
Hmgb1-208ENSMUST00000139443 Ccdc180J3QNE4 1664 aa29.9■■■□□ 2.38
Hmgb1-208ENSMUST00000139443 Dnajc5bQ9CQ94 199 aa29.81■■■□□ 2.36
Hmgb1-208ENSMUST00000139443 Crybg2B7ZCC2 1516 aa29.79■■■□□ 2.36
Hmgb1-208ENSMUST00000139443 Pds5bQ4VA53 1446 aaKnown RBP29.76■■■□□ 2.35
Hmgb1-208ENSMUST00000139443 Zcchc6Q5BLK4 1491 aaKnown RBP29.55■■■□□ 2.32
Hmgb1-208ENSMUST00000139443 Thoc2B1AZI6 1594 aaKnown RBP29.51■■■□□ 2.31
Hmgb1-208ENSMUST00000139443 Atad2bE9Q166 1460 aaKnown RBP29.42■■■□□ 2.3
Hmgb1-208ENSMUST00000139443 Ercc6F8VPZ5 1481 aa29.18■■■□□ 2.26
Hmgb1-208ENSMUST00000139443 Smarca4Q3TKT4 1613 aaKnown RBP29.13■■■□□ 2.25
Hmgb1-208ENSMUST00000139443 Smarca2Q6DIC0 1577 aa29.07■■■□□ 2.24
Hmgb1-208ENSMUST00000139443 Cc2d2aQ8CFW7 1633 aa29.05■■■□□ 2.24
Hmgb1-208ENSMUST00000139443 Iqgap2Q3UQ44 1575 aa29■■■□□ 2.23
Hmgb1-208ENSMUST00000139443 Cecr2E9Q2Z1 1453 aa28.92■■■□□ 2.22
Hmgb1-208ENSMUST00000139443 Fam135aQ6NS59 1506 aa28.83■■■□□ 2.21
Hmgb1-208ENSMUST00000139443 Wdr62Q3U3T8 1523 aa28.74■■■□□ 2.19
Hmgb1-208ENSMUST00000139443 Frmpd1A2AKB4 1549 aa28.68■■■□□ 2.18
Hmgb1-208ENSMUST00000139443 Phldb1Q6PDH0 1371 aaKnown RBP28.62■■■□□ 2.17
Hmgb1-208ENSMUST00000139443 Baz1bQ9Z277 1479 aa28.56■■■□□ 2.16
Hmgb1-208ENSMUST00000139443 Rtl1Q7M732 1744 aa28.54■■■□□ 2.16
Hmgb1-208ENSMUST00000139443 Ubl4bQ9CQ84 188 aa28.37■■■□□ 2.13
Hmgb1-208ENSMUST00000139443 Cttnbp2B9EJA2 1648 aa28.31■■■□□ 2.12
Hmgb1-208ENSMUST00000139443 Unc13aQ4KUS2 1712 aa28.29■■■□□ 2.12
Hmgb1-208ENSMUST00000139443 CftrP26361 1476 aa28.28■■■□□ 2.12
Hmgb1-208ENSMUST00000139443 Brd4Q9ESU6 1400 aaKnown RBP28.25■■■□□ 2.11
Hmgb1-208ENSMUST00000139443 Synj1Q8CHC4 1574 aa28.22■■■□□ 2.11
Hmgb1-208ENSMUST00000139443 Mrc2Q64449 1479 aa28.2■■■□□ 2.1
Hmgb1-208ENSMUST00000139443 Ccdc136Q3TVA9 1136 aa28.09■■■□□ 2.09
Hmgb1-208ENSMUST00000139443 Esf1Q3V1V3 845 aaKnown RBP27.91■■■□□ 2.06
Hmgb1-208ENSMUST00000139443 Rsf1E9PWW9 1441 aaKnown RBP27.75■■■□□ 2.03
Hmgb1-208ENSMUST00000139443 Trim41Q5NCC3 630 aa27.7■■■□□ 2.02
Hmgb1-208ENSMUST00000139443 Kif15Q6P9L6 1387 aa27.69■■■□□ 2.02
Hmgb1-208ENSMUST00000139443 Cux2P70298 1426 aa27.67■■■□□ 2.02
Hmgb1-208ENSMUST00000139443 Lrriq1Q0P5X1 1673 aa27.57■■■□□ 2
Hmgb1-208ENSMUST00000139443 Lamc3Q9R0B6 1581 aa27.51■■□□□ 1.99
Hmgb1-208ENSMUST00000139443 Kif21aQ9QXL2 1672 aa27.49■■□□□ 1.99
Hmgb1-208ENSMUST00000139443 Npm1Q61937 292 aaKnown RBP27.44■■□□□ 1.98
Hmgb1-208ENSMUST00000139443 Cep164Q5DU05 1446 aa27.33■■□□□ 1.96
Hmgb1-208ENSMUST00000139443 Dnajc5P60904 198 aa27.21■■□□□ 1.95
Hmgb1-208ENSMUST00000139443 Ccdc18Q640L5 1455 aa27.2■■□□□ 1.95
Hmgb1-208ENSMUST00000139443 Eif4g3Q80XI3 1579 aaKnown RBP27.2■■□□□ 1.94
Hmgb1-208ENSMUST00000139443 Golga3P55937 1487 aa27.15■■□□□ 1.94
Hmgb1-208ENSMUST00000139443 TnnQ80Z71 1560 aa27.14■■□□□ 1.94
Hmgb1-208ENSMUST00000139443 Cngb1E1AZ71 1325 aa27.14■■□□□ 1.93
Hmgb1-208ENSMUST00000139443 Il27Q8K3I6 234 aa27.13■■□□□ 1.93
Hmgb1-208ENSMUST00000139443 Top2bQ64511 1612 aa27.12■■□□□ 1.93
Hmgb1-208ENSMUST00000139443 Dhx29Q6PGC1 1365 aaKnown RBP27.09■■□□□ 1.93
Hmgb1-208ENSMUST00000139443 Urb2E9Q7L1 1524 aaKnown RBP27.05■■□□□ 1.92
Hmgb1-208ENSMUST00000139443 Camsap1A2AHC3 1581 aa27.01■■□□□ 1.92
Hmgb1-208ENSMUST00000139443 LrpprcQ6PB66 1392 aaKnown RBP27.01■■□□□ 1.91
Hmgb1-208ENSMUST00000139443 Plb1Q3TTY0 1478 aa27■■□□□ 1.91
Hmgb1-208ENSMUST00000139443 Crocc2F6XLV1 1638 aa26.98■■□□□ 1.91
Hmgb1-208ENSMUST00000139443 Shroom2A2ALU4 1481 aa26.93■■□□□ 1.9
Hmgb1-208ENSMUST00000139443 Fmn1Q05860 1466 aa26.9■■□□□ 1.9
Hmgb1-208ENSMUST00000139443 PogzQ8BZH4 1409 aaKnown RBP26.82■■□□□ 1.88
Hmgb1-208ENSMUST00000139443 Ift140E9PY46 1464 aa26.81■■□□□ 1.88
Hmgb1-208ENSMUST00000139443 Rusc2Q80U22 1514 aa26.72■■□□□ 1.87
Hmgb1-208ENSMUST00000139443 Duox2A2AQ99 1517 aa26.7■■□□□ 1.87
Hmgb1-208ENSMUST00000139443 Pabpn1Q8CCS6 302 aaKnown RBP26.68■■□□□ 1.86
Hmgb1-208ENSMUST00000139443 Grin2bQ01097 1482 aa26.62■■□□□ 1.85
Hmgb1-208ENSMUST00000139443 Pelp1Q9DBD5 1123 aaKnown RBP26.55■■□□□ 1.84
Hmgb1-208ENSMUST00000139443 Col17a1Q07563 1470 aa26.55■■□□□ 1.84
Hmgb1-208ENSMUST00000139443 Disp1Q3TDN0 1521 aa26.52■■□□□ 1.84
Hmgb1-208ENSMUST00000139443 Pbrm1Q8BSQ9 1634 aaKnown RBP26.5■■□□□ 1.83
Hmgb1-208ENSMUST00000139443 Samd9lQ69Z37 1561 aa26.48■■□□□ 1.83
Hmgb1-208ENSMUST00000139443 Efcab5A0JP43 1406 aa26.47■■□□□ 1.83
Hmgb1-208ENSMUST00000139443 Cc2d2bA0A286YDU8 1405 aa26.44■■□□□ 1.82
Hmgb1-208ENSMUST00000139443 Nup160Q9Z0W3 1402 aaKnown RBP26.41■■□□□ 1.82
Hmgb1-208ENSMUST00000139443 Setd1bQ8CFT2 1985 aa26.37■■□□□ 1.81
Hmgb1-208ENSMUST00000139443 Ccdc88bQ4QRL3 1481 aa26.33■■□□□ 1.81
Hmgb1-208ENSMUST00000139443 Zcchc11B2RX14 1644 aaKnown RBP26.32■■□□□ 1.8
Hmgb1-208ENSMUST00000139443 Top2aQ01320 1528 aaKnown RBP26.32■■□□□ 1.8
Hmgb1-208ENSMUST00000139443 Rad54l2Q99NG0 1466 aa26.3■■□□□ 1.8
Hmgb1-208ENSMUST00000139443 NrkQ9R0G8 1455 aa26.3■■□□□ 1.8
Hmgb1-208ENSMUST00000139443 Grin2aP35436 1464 aa26.27■■□□□ 1.8
Hmgb1-208ENSMUST00000139443 AqrQ8CFQ3 1481 aaKnown RBP26.24■■□□□ 1.79
Hmgb1-208ENSMUST00000139443 Magi3Q9EQJ9 1476 aa26.22■■□□□ 1.79
Hmgb1-208ENSMUST00000139443 Fgd6Q69ZL1 1399 aa26.19■■□□□ 1.78
Hmgb1-208ENSMUST00000139443 Shroom4Q1W617 1475 aa26.17■■□□□ 1.78
Hmgb1-208ENSMUST00000139443 Chic1Q8CBW7 227 aa26.11■■□□□ 1.77
Hmgb1-208ENSMUST00000139443 Zeb1Q64318 1117 aa26.1■■□□□ 1.77
Hmgb1-208ENSMUST00000139443 SynmQ70IV5 1561 aa26.1■■□□□ 1.77
Hmgb1-208ENSMUST00000139443 PtprkP35822 1457 aa26.08■■□□□ 1.77
Hmgb1-208ENSMUST00000139443 Pla2r1Q62028 1487 aa26.05■■□□□ 1.76
Hmgb1-208ENSMUST00000139443 Gpatch8A2A6A1 1505 aa26.04■■□□□ 1.76
Hmgb1-208ENSMUST00000139443 Adgrl3Q80TS3 1537 aa26.04■■□□□ 1.76
Hmgb1-208ENSMUST00000139443 AknaQ80VW7 1404 aa26.03■■□□□ 1.76
Hmgb1-208ENSMUST00000139443 Gapvd1Q6PAR5 1458 aa26.02■■□□□ 1.76
Retrieved 100 of 22,080 RNA–protein pairs in 57.7 ms