RNA–Protein interactions for RNA: ENSMUST00000138559.8

Ube4a-204, Transcript of Ubiquitin conjugation factor E4 A, mousemouse

TSL 1 (best) BASIC

Gene Ube4a, Length 3,374 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ube4a-204ENSMUST00000138559 Gm35339A0A140LHH9 1649 aa16.31■□□□□ 0.2
Ube4a-204ENSMUST00000138559 NischQ80TM9 1593 aa16.21■□□□□ 0.19
Ube4a-204ENSMUST00000138559 Abcc9P70170 1546 aa15.72■□□□□ 0.11
Ube4a-204ENSMUST00000138559 Abcc8B2RUS7 1588 aa15.57■□□□□ 0.08
Ube4a-204ENSMUST00000138559 ScribQ80U72 1612 aa14.86□□□□□ -0.03
Ube4a-204ENSMUST00000138559 NacadQ5SWP3 1504 aa14.44□□□□□ -0.1
Ube4a-204ENSMUST00000138559 Kdm5dQ62240 1548 aa14.44□□□□□ -0.1
Ube4a-204ENSMUST00000138559 Dcaf1Q80TR8 1506 aa14.44□□□□□ -0.1
Ube4a-204ENSMUST00000138559 Rhox8Q6VSS7 320 aa14.28□□□□□ -0.12
Ube4a-204ENSMUST00000138559 Rb1cc1Q9ESK9 1588 aa14.17□□□□□ -0.14
Ube4a-204ENSMUST00000138559 Sycp2Q9CUU3 1500 aa14.13□□□□□ -0.15
Ube4a-204ENSMUST00000138559 Ccdc180J3QNE4 1664 aa14.05□□□□□ -0.16
Ube4a-204ENSMUST00000138559 Baz1aO88379 1555 aa13.99□□□□□ -0.17
Ube4a-204ENSMUST00000138559 BicraF8VPZ9 1578 aa13.88□□□□□ -0.19
Ube4a-204ENSMUST00000138559 Crybg2B7ZCC2 1516 aa13.87□□□□□ -0.19
Ube4a-204ENSMUST00000138559 Zcchc6Q5BLK4 1491 aaKnown RBP13.73□□□□□ -0.21
Ube4a-204ENSMUST00000138559 Rtl1Q7M732 1744 aa13.69□□□□□ -0.22
Ube4a-204ENSMUST00000138559 Smarca2Q6DIC0 1577 aa13.59□□□□□ -0.23
Ube4a-204ENSMUST00000138559 Pds5bQ4VA53 1446 aaKnown RBP13.47□□□□□ -0.25
Ube4a-204ENSMUST00000138559 Smarca4Q3TKT4 1613 aaKnown RBP13.4□□□□□ -0.26
Ube4a-204ENSMUST00000138559 Cecr2E9Q2Z1 1453 aa13.39□□□□□ -0.27
Ube4a-204ENSMUST00000138559 Atad2bE9Q166 1460 aaKnown RBP13.39□□□□□ -0.27
Ube4a-204ENSMUST00000138559 Iqgap2Q3UQ44 1575 aa13.28□□□□□ -0.28
Ube4a-204ENSMUST00000138559 Ccdc136Q3TVA9 1136 aa13.28□□□□□ -0.28
Ube4a-204ENSMUST00000138559 Thoc2B1AZI6 1594 aaKnown RBP13.25□□□□□ -0.29
Ube4a-204ENSMUST00000138559 Brd4Q9ESU6 1400 aaKnown RBP13.24□□□□□ -0.29
Ube4a-204ENSMUST00000138559 Ercc6F8VPZ5 1481 aa13.22□□□□□ -0.29
Ube4a-204ENSMUST00000138559 Cttnbp2B9EJA2 1648 aa13.19□□□□□ -0.3
Ube4a-204ENSMUST00000138559 Synj1Q8CHC4 1574 aa13.17□□□□□ -0.3
Ube4a-204ENSMUST00000138559 CftrP26361 1476 aa13.17□□□□□ -0.3
Ube4a-204ENSMUST00000138559 Trim41Q5NCC3 630 aa13.13□□□□□ -0.31
Ube4a-204ENSMUST00000138559 Wdr62Q3U3T8 1523 aa13.12□□□□□ -0.31
Ube4a-204ENSMUST00000138559 Frmpd1A2AKB4 1549 aa13.08□□□□□ -0.32
Ube4a-204ENSMUST00000138559 Cc2d2aQ8CFW7 1633 aa13.05□□□□□ -0.32
Ube4a-204ENSMUST00000138559 Dnajc5bQ9CQ94 199 aa13.03□□□□□ -0.32
Ube4a-204ENSMUST00000138559 Fam135aQ6NS59 1506 aa13.01□□□□□ -0.33
Ube4a-204ENSMUST00000138559 Esf1Q3V1V3 845 aaKnown RBP12.98□□□□□ -0.33
Ube4a-204ENSMUST00000138559 Phldb1Q6PDH0 1371 aaKnown RBP12.96□□□□□ -0.33
Ube4a-204ENSMUST00000138559 Unc13aQ4KUS2 1712 aa12.95□□□□□ -0.34
Ube4a-204ENSMUST00000138559 Baz1bQ9Z277 1479 aa12.9□□□□□ -0.34
Ube4a-204ENSMUST00000138559 Golga3P55937 1487 aa12.86□□□□□ -0.35
Ube4a-204ENSMUST00000138559 Top2bQ64511 1612 aa12.82□□□□□ -0.36
Ube4a-204ENSMUST00000138559 Ubl4bQ9CQ84 188 aa12.81□□□□□ -0.36
Ube4a-204ENSMUST00000138559 Cngb1E1AZ71 1325 aa12.81□□□□□ -0.36
Ube4a-204ENSMUST00000138559 Rsf1E9PWW9 1441 aaKnown RBP12.79□□□□□ -0.36
Ube4a-204ENSMUST00000138559 Lamc3Q9R0B6 1581 aa12.74□□□□□ -0.37
Ube4a-204ENSMUST00000138559 Kif15Q6P9L6 1387 aa12.73□□□□□ -0.37
Ube4a-204ENSMUST00000138559 Mrc2Q64449 1479 aa12.71□□□□□ -0.37
Ube4a-204ENSMUST00000138559 TnnQ80Z71 1560 aa12.68□□□□□ -0.38
Ube4a-204ENSMUST00000138559 Fmn1Q05860 1466 aa12.67□□□□□ -0.38
Ube4a-204ENSMUST00000138559 Cux2P70298 1426 aa12.65□□□□□ -0.38
Ube4a-204ENSMUST00000138559 Ccdc18Q640L5 1455 aa12.58□□□□□ -0.4
Ube4a-204ENSMUST00000138559 Ccdc88bQ4QRL3 1481 aa12.55□□□□□ -0.4
Ube4a-204ENSMUST00000138559 HrcG5E8J6 738 aa12.55□□□□□ -0.4
Ube4a-204ENSMUST00000138559 Camsap1A2AHC3 1581 aa12.55□□□□□ -0.4
Ube4a-204ENSMUST00000138559 Npm1Q61937 292 aaKnown RBP12.55□□□□□ -0.4
Ube4a-204ENSMUST00000138559 Cep164Q5DU05 1446 aa12.54□□□□□ -0.4
Ube4a-204ENSMUST00000138559 Kif21aQ9QXL2 1672 aa12.51□□□□□ -0.41
Ube4a-204ENSMUST00000138559 Il27Q8K3I6 234 aa12.49□□□□□ -0.41
Ube4a-204ENSMUST00000138559 Top2aQ01320 1528 aaKnown RBP12.48□□□□□ -0.41
Ube4a-204ENSMUST00000138559 Chic1Q8CBW7 227 aa12.47□□□□□ -0.41
Ube4a-204ENSMUST00000138559 LrpprcQ6PB66 1392 aaKnown RBP12.43□□□□□ -0.42
Ube4a-204ENSMUST00000138559 Lrriq1Q0P5X1 1673 aa12.42□□□□□ -0.42
Ube4a-204ENSMUST00000138559 Dhx29Q6PGC1 1365 aaKnown RBP12.41□□□□□ -0.42
Ube4a-204ENSMUST00000138559 Grin2bQ01097 1482 aa12.39□□□□□ -0.43
Ube4a-204ENSMUST00000138559 PogzQ8BZH4 1409 aaKnown RBP12.38□□□□□ -0.43
Ube4a-204ENSMUST00000138559 Crocc2F6XLV1 1638 aa12.38□□□□□ -0.43
Ube4a-204ENSMUST00000138559 NrkQ9R0G8 1455 aa12.33□□□□□ -0.44
Ube4a-204ENSMUST00000138559 Duox2A2AQ99 1517 aa12.33□□□□□ -0.44
Ube4a-204ENSMUST00000138559 Urb2E9Q7L1 1524 aaKnown RBP12.31□□□□□ -0.44
Ube4a-204ENSMUST00000138559 Plb1Q3TTY0 1478 aa12.3□□□□□ -0.44
Ube4a-204ENSMUST00000138559 Efcab5A0JP43 1406 aa12.29□□□□□ -0.44
Ube4a-204ENSMUST00000138559 Shroom4Q1W617 1475 aa12.29□□□□□ -0.44
Ube4a-204ENSMUST00000138559 Eif4g3Q80XI3 1579 aaKnown RBP12.25□□□□□ -0.45
Ube4a-204ENSMUST00000138559 Gab3Q8BSM5 595 aa12.25□□□□□ -0.45
Ube4a-204ENSMUST00000138559 Samd9lQ69Z37 1561 aa12.25□□□□□ -0.45
Ube4a-204ENSMUST00000138559 Ift140E9PY46 1464 aa12.24□□□□□ -0.45
Ube4a-204ENSMUST00000138559 PtprkP35822 1457 aa12.24□□□□□ -0.45
Ube4a-204ENSMUST00000138559 Npm2Q80W85 207 aa12.22□□□□□ -0.45
Ube4a-204ENSMUST00000138559 Rapgef2Q8CHG7 1496 aa12.2□□□□□ -0.46
Ube4a-204ENSMUST00000138559 Pbrm1Q8BSQ9 1634 aaKnown RBP12.19□□□□□ -0.46
Ube4a-204ENSMUST00000138559 Zeb1Q64318 1117 aa12.16□□□□□ -0.46
Ube4a-204ENSMUST00000138559 Disp1Q3TDN0 1521 aa12.16□□□□□ -0.46
Ube4a-204ENSMUST00000138559 SynmQ70IV5 1561 aa12.15□□□□□ -0.46
Ube4a-204ENSMUST00000138559 Rusc2Q80U22 1514 aa12.14□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Rad54l2Q99NG0 1466 aa12.14□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Setd1bQ8CFT2 1985 aa12.13□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Mroh2bQ7M6Y6 1581 aa12.13□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Nup160Q9Z0W3 1402 aaKnown RBP12.11□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Map3k1P53349 1493 aa12.11□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Cep162Q6ZQ06 1403 aa12.11□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Grin2aP35436 1464 aa12.11□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Eif4g1Q6NZJ6 1600 aaKnown RBP12.11□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Magi3Q9EQJ9 1476 aa12.11□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Arhgap35Q91YM2 1499 aa12.1□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Cc2d2bA0A286YDU8 1405 aa12.09□□□□□ -0.47
Ube4a-204ENSMUST00000138559 Gpatch8A2A6A1 1505 aa12.07□□□□□ -0.48
Ube4a-204ENSMUST00000138559 Pla2r1Q62028 1487 aa12.07□□□□□ -0.48
Ube4a-204ENSMUST00000138559 AqrQ8CFQ3 1481 aaKnown RBP12.05□□□□□ -0.48
Ube4a-204ENSMUST00000138559 Carmil1Q6EDY6 1374 aa12.04□□□□□ -0.48
Retrieved 100 of 22,080 RNA–protein pairs in 57.2 ms