RNA–Protein interactions for RNA: ENSMUST00000098548.7

Scn1b-201, Transcript of Sodium channel subunit beta-1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Scn1b, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1b-201ENSMUST00000098548 Gm35339A0A140LHH9 1649 aa49.03■■■■■ 5.44
Scn1b-201ENSMUST00000098548 NischQ80TM9 1593 aa48.73■■■■■ 5.39
Scn1b-201ENSMUST00000098548 Abcc9P70170 1546 aa47.22■■■■■ 5.15
Scn1b-201ENSMUST00000098548 Abcc8B2RUS7 1588 aa46.93■■■■■ 5.1
Scn1b-201ENSMUST00000098548 ScribQ80U72 1612 aa44.91■■■■■ 4.78
Scn1b-201ENSMUST00000098548 Kdm5dQ62240 1548 aa43.57■■■■■ 4.56
Scn1b-201ENSMUST00000098548 NacadQ5SWP3 1504 aa43.49■■■■■ 4.55
Scn1b-201ENSMUST00000098548 Dcaf1Q80TR8 1506 aa43.26■■■■■ 4.52
Scn1b-201ENSMUST00000098548 Rhox8Q6VSS7 320 aa42.84■■■■■ 4.45
Scn1b-201ENSMUST00000098548 Sycp2Q9CUU3 1500 aa42.64■■■■■ 4.42
Scn1b-201ENSMUST00000098548 Rb1cc1Q9ESK9 1588 aa42.54■■■■■ 4.4
Scn1b-201ENSMUST00000098548 BicraF8VPZ9 1578 aa41.99■■■■■ 4.31
Scn1b-201ENSMUST00000098548 Baz1aO88379 1555 aa41.95■■■■■ 4.31
Scn1b-201ENSMUST00000098548 Ccdc180J3QNE4 1664 aa41.92■■■■■ 4.3
Scn1b-201ENSMUST00000098548 Crybg2B7ZCC2 1516 aa41.58■■■■■ 4.25
Scn1b-201ENSMUST00000098548 Zcchc6Q5BLK4 1491 aaKnown RBP41.29■■■■■ 4.2
Scn1b-201ENSMUST00000098548 Rtl1Q7M732 1744 aa40.87■■■■■ 4.13
Scn1b-201ENSMUST00000098548 Smarca2Q6DIC0 1577 aa40.81■■■■■ 4.12
Scn1b-201ENSMUST00000098548 Pds5bQ4VA53 1446 aaKnown RBP40.57■■■■■ 4.08
Scn1b-201ENSMUST00000098548 Cecr2E9Q2Z1 1453 aa40.51■■■■■ 4.08
Scn1b-201ENSMUST00000098548 Atad2bE9Q166 1460 aaKnown RBP40.34■■■■■ 4.05
Scn1b-201ENSMUST00000098548 Smarca4Q3TKT4 1613 aaKnown RBP40.31■■■■■ 4.04
Scn1b-201ENSMUST00000098548 Thoc2B1AZI6 1594 aaKnown RBP40.04■■■■■ 4
Scn1b-201ENSMUST00000098548 Ccdc136Q3TVA9 1136 aa40.02■■■■■ 4
Scn1b-201ENSMUST00000098548 Iqgap2Q3UQ44 1575 aa40.02■■■■■ 4
Scn1b-201ENSMUST00000098548 Dnajc5bQ9CQ94 199 aa39.98■■■■□ 3.99
Scn1b-201ENSMUST00000098548 Ercc6F8VPZ5 1481 aa39.77■■■■□ 3.96
Scn1b-201ENSMUST00000098548 Synj1Q8CHC4 1574 aa39.67■■■■□ 3.94
Scn1b-201ENSMUST00000098548 Brd4Q9ESU6 1400 aaKnown RBP39.64■■■■□ 3.94
Scn1b-201ENSMUST00000098548 CftrP26361 1476 aa39.63■■■■□ 3.93
Scn1b-201ENSMUST00000098548 Wdr62Q3U3T8 1523 aa39.56■■■■□ 3.92
Scn1b-201ENSMUST00000098548 Cttnbp2B9EJA2 1648 aa39.54■■■■□ 3.92
Scn1b-201ENSMUST00000098548 Frmpd1A2AKB4 1549 aa39.53■■■■□ 3.92
Scn1b-201ENSMUST00000098548 Cc2d2aQ8CFW7 1633 aa39.48■■■■□ 3.91
Scn1b-201ENSMUST00000098548 Trim41Q5NCC3 630 aa39.29■■■■□ 3.88
Scn1b-201ENSMUST00000098548 Fam135aQ6NS59 1506 aa39.25■■■■□ 3.87
Scn1b-201ENSMUST00000098548 Phldb1Q6PDH0 1371 aaKnown RBP39.09■■■■□ 3.85
Scn1b-201ENSMUST00000098548 Unc13aQ4KUS2 1712 aa39.09■■■■□ 3.85
Scn1b-201ENSMUST00000098548 Esf1Q3V1V3 845 aaKnown RBP38.99■■■■□ 3.83
Scn1b-201ENSMUST00000098548 Ubl4bQ9CQ84 188 aa38.77■■■■□ 3.8
Scn1b-201ENSMUST00000098548 Baz1bQ9Z277 1479 aa38.58■■■■□ 3.77
Scn1b-201ENSMUST00000098548 Golga3P55937 1487 aa38.55■■■■□ 3.76
Scn1b-201ENSMUST00000098548 Cngb1E1AZ71 1325 aa38.48■■■■□ 3.75
Scn1b-201ENSMUST00000098548 Top2bQ64511 1612 aa38.44■■■■□ 3.74
Scn1b-201ENSMUST00000098548 Rsf1E9PWW9 1441 aaKnown RBP38.41■■■■□ 3.74
Scn1b-201ENSMUST00000098548 Kif15Q6P9L6 1387 aa38.34■■■■□ 3.73
Scn1b-201ENSMUST00000098548 Mrc2Q64449 1479 aa38.33■■■■□ 3.73
Scn1b-201ENSMUST00000098548 Lamc3Q9R0B6 1581 aa38.3■■■■□ 3.72
Scn1b-201ENSMUST00000098548 Cux2P70298 1426 aa38.16■■■■□ 3.7
Scn1b-201ENSMUST00000098548 TnnQ80Z71 1560 aa38.08■■■■□ 3.69
Scn1b-201ENSMUST00000098548 Fmn1Q05860 1466 aa37.95■■■■□ 3.67
Scn1b-201ENSMUST00000098548 HrcG5E8J6 738 aa37.81■■■■□ 3.64
Scn1b-201ENSMUST00000098548 Npm1Q61937 292 aaKnown RBP37.78■■■■□ 3.64
Scn1b-201ENSMUST00000098548 Ccdc88bQ4QRL3 1481 aa37.78■■■■□ 3.64
Scn1b-201ENSMUST00000098548 Kif21aQ9QXL2 1672 aa37.76■■■■□ 3.64
Scn1b-201ENSMUST00000098548 Il27Q8K3I6 234 aa37.73■■■■□ 3.63
Scn1b-201ENSMUST00000098548 Camsap1A2AHC3 1581 aa37.71■■■■□ 3.63
Scn1b-201ENSMUST00000098548 Ccdc18Q640L5 1455 aa37.68■■■■□ 3.62
Scn1b-201ENSMUST00000098548 Cep164Q5DU05 1446 aa37.67■■■■□ 3.62
Scn1b-201ENSMUST00000098548 Chic1Q8CBW7 227 aa37.63■■■■□ 3.61
Scn1b-201ENSMUST00000098548 Lrriq1Q0P5X1 1673 aa37.52■■■■□ 3.6
Scn1b-201ENSMUST00000098548 LrpprcQ6PB66 1392 aaKnown RBP37.43■■■■□ 3.58
Scn1b-201ENSMUST00000098548 Dhx29Q6PGC1 1365 aaKnown RBP37.4■■■■□ 3.58
Scn1b-201ENSMUST00000098548 Top2aQ01320 1528 aaKnown RBP37.39■■■■□ 3.58
Scn1b-201ENSMUST00000098548 PogzQ8BZH4 1409 aaKnown RBP37.27■■■■□ 3.56
Scn1b-201ENSMUST00000098548 Grin2bQ01097 1482 aa37.26■■■■□ 3.55
Scn1b-201ENSMUST00000098548 Crocc2F6XLV1 1638 aa37.23■■■■□ 3.55
Scn1b-201ENSMUST00000098548 Urb2E9Q7L1 1524 aaKnown RBP37.19■■■■□ 3.54
Scn1b-201ENSMUST00000098548 Plb1Q3TTY0 1478 aa37.18■■■■□ 3.54
Scn1b-201ENSMUST00000098548 Duox2A2AQ99 1517 aa37.13■■■■□ 3.53
Scn1b-201ENSMUST00000098548 NrkQ9R0G8 1455 aa36.97■■■■□ 3.51
Scn1b-201ENSMUST00000098548 PtprkP35822 1457 aa36.95■■■■□ 3.51
Scn1b-201ENSMUST00000098548 Eif4g3Q80XI3 1579 aaKnown RBP36.94■■■■□ 3.5
Scn1b-201ENSMUST00000098548 Efcab5A0JP43 1406 aa36.92■■■■□ 3.5
Scn1b-201ENSMUST00000098548 Samd9lQ69Z37 1561 aa36.9■■■■□ 3.5
Scn1b-201ENSMUST00000098548 Shroom4Q1W617 1475 aa36.87■■■■□ 3.49
Scn1b-201ENSMUST00000098548 Gab3Q8BSM5 595 aa36.84■■■■□ 3.49
Scn1b-201ENSMUST00000098548 Ift140E9PY46 1464 aa36.8■■■■□ 3.48
Scn1b-201ENSMUST00000098548 Disp1Q3TDN0 1521 aa36.72■■■■□ 3.47
Scn1b-201ENSMUST00000098548 Rad54l2Q99NG0 1466 aa36.67■■■■□ 3.46
Scn1b-201ENSMUST00000098548 Npm2Q80W85 207 aa36.61■■■■□ 3.45
Scn1b-201ENSMUST00000098548 Setd1bQ8CFT2 1985 aa36.59■■■■□ 3.45
Scn1b-201ENSMUST00000098548 Rusc2Q80U22 1514 aa36.56■■■■□ 3.44
Scn1b-201ENSMUST00000098548 Rapgef2Q8CHG7 1496 aa36.55■■■■□ 3.44
Scn1b-201ENSMUST00000098548 Magi3Q9EQJ9 1476 aa36.5■■■■□ 3.43
Scn1b-201ENSMUST00000098548 Nup160Q9Z0W3 1402 aaKnown RBP36.5■■■■□ 3.43
Scn1b-201ENSMUST00000098548 Pbrm1Q8BSQ9 1634 aaKnown RBP36.5■■■■□ 3.43
Scn1b-201ENSMUST00000098548 Zeb1Q64318 1117 aa36.48■■■■□ 3.43
Scn1b-201ENSMUST00000098548 SynmQ70IV5 1561 aa36.48■■■■□ 3.43
Scn1b-201ENSMUST00000098548 Grin2aP35436 1464 aa36.44■■■■□ 3.42
Scn1b-201ENSMUST00000098548 Mroh2bQ7M6Y6 1581 aa36.4■■■■□ 3.42
Scn1b-201ENSMUST00000098548 Pla2r1Q62028 1487 aa36.37■■■■□ 3.41
Scn1b-201ENSMUST00000098548 Cc2d2bA0A286YDU8 1405 aa36.35■■■■□ 3.41
Scn1b-201ENSMUST00000098548 Arhgap35Q91YM2 1499 aa36.35■■■■□ 3.41
Scn1b-201ENSMUST00000098548 Cep162Q6ZQ06 1403 aa36.31■■■■□ 3.4
Scn1b-201ENSMUST00000098548 Eif4g1Q6NZJ6 1600 aaKnown RBP36.3■■■■□ 3.4
Scn1b-201ENSMUST00000098548 AqrQ8CFQ3 1481 aaKnown RBP36.2■■■■□ 3.39
Scn1b-201ENSMUST00000098548 Map3k1P53349 1493 aa36.18■■■■□ 3.38
Scn1b-201ENSMUST00000098548 Gpatch8A2A6A1 1505 aa36.18■■■■□ 3.38
Scn1b-201ENSMUST00000098548 Myt1lP97500 1187 aa36.1■■■■□ 3.37
Retrieved 100 of 22,080 RNA–protein pairs in 7.5 ms