RNA–Protein interactions for RNA: ENSMUST00000044166.8

Cdc40-201, Transcript of Pre-mRNA-processing factor 17, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Cdc40, Length 3,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40-201ENSMUST00000044166 NischQ80TM9 1593 aa14.75□□□□□ -0.05
Cdc40-201ENSMUST00000044166 Abcc9P70170 1546 aa14.32□□□□□ -0.12
Cdc40-201ENSMUST00000044166 Gm35339A0A140LHH9 1649 aa14.27□□□□□ -0.13
Cdc40-201ENSMUST00000044166 Rtl1Q7M732 1744 aa14.16□□□□□ -0.14
Cdc40-201ENSMUST00000044166 Rhox8Q6VSS7 320 aa14.11□□□□□ -0.15
Cdc40-201ENSMUST00000044166 Ccdc180J3QNE4 1664 aa13.99□□□□□ -0.17
Cdc40-201ENSMUST00000044166 Rpgrip1Q9EPQ2 1331 aa13.98□□□□□ -0.17
Cdc40-201ENSMUST00000044166 Abcc8B2RUS7 1588 aa13.89□□□□□ -0.19
Cdc40-201ENSMUST00000044166 DiexfQ8BTT6 772 aaKnown RBP13.65□□□□□ -0.22
Cdc40-201ENSMUST00000044166 Pcgf6Q99NA9 353 aa13.61□□□□□ -0.23
Cdc40-201ENSMUST00000044166 Acin1Q9JIX8 1338 aaKnown RBP13.56□□□□□ -0.24
Cdc40-201ENSMUST00000044166 Zcchc6Q5BLK4 1491 aaKnown RBP13.5□□□□□ -0.25
Cdc40-201ENSMUST00000044166 HrcG5E8J6 738 aa13.32□□□□□ -0.28
Cdc40-201ENSMUST00000044166 Dcaf1Q80TR8 1506 aa13.27□□□□□ -0.28
Cdc40-201ENSMUST00000044166 Ehmt2Q9Z148 1263 aaKnown RBP13.26□□□□□ -0.29
Cdc40-201ENSMUST00000044166 CenpbP27790 599 aa13.24□□□□□ -0.29
Cdc40-201ENSMUST00000044166 Bcl11aQ9QYE3 773 aa13.19□□□□□ -0.3
Cdc40-201ENSMUST00000044166 Amer1Q7TS75 1132 aa13.15□□□□□ -0.3
Cdc40-201ENSMUST00000044166 Las1lA2BE28 776 aaKnown RBP13.09□□□□□ -0.31
Cdc40-201ENSMUST00000044166 PrkcshO08795 521 aa13.08□□□□□ -0.32
Cdc40-201ENSMUST00000044166 Neurod1Q60867 357 aa13.05□□□□□ -0.32
Cdc40-201ENSMUST00000044166 Ccdc136Q3TVA9 1136 aa13.02□□□□□ -0.32
Cdc40-201ENSMUST00000044166 Myt1Q8CFC2 1127 aa13□□□□□ -0.33
Cdc40-201ENSMUST00000044166 1700123L14RikQ3V2K7 440 aa12.96□□□□□ -0.33
Cdc40-201ENSMUST00000044166 Rb1cc1Q9ESK9 1588 aa12.95□□□□□ -0.34
Cdc40-201ENSMUST00000044166 Trim41Q5NCC3 630 aa12.93□□□□□ -0.34
Cdc40-201ENSMUST00000044166 Supt5hO55201 1082 aaKnown RBP12.85□□□□□ -0.35
Cdc40-201ENSMUST00000044166 Baz1aO88379 1555 aa12.81□□□□□ -0.36
Cdc40-201ENSMUST00000044166 Cep164Q5DU05 1446 aa12.78□□□□□ -0.36
Cdc40-201ENSMUST00000044166 ScribQ80U72 1612 aa12.74□□□□□ -0.37
Cdc40-201ENSMUST00000044166 Csrnp3P59055 597 aa12.74□□□□□ -0.37
Cdc40-201ENSMUST00000044166 Ifnlr1Q8CGK5 535 aa12.65□□□□□ -0.38
Cdc40-201ENSMUST00000044166 Kdm5dQ62240 1548 aa12.61□□□□□ -0.39
Cdc40-201ENSMUST00000044166 NefmP08553 848 aa12.61□□□□□ -0.39
Cdc40-201ENSMUST00000044166 Gm38655A0A286YDK6 273 aa12.61□□□□□ -0.39
Cdc40-201ENSMUST00000044166 Zeb1Q64318 1117 aa12.58□□□□□ -0.4
Cdc40-201ENSMUST00000044166 Plppr3Q7TPB0 716 aa12.54□□□□□ -0.4
Cdc40-201ENSMUST00000044166 Smarca2Q6DIC0 1577 aa12.54□□□□□ -0.4
Cdc40-201ENSMUST00000044166 Crybg2B7ZCC2 1516 aa12.51□□□□□ -0.41
Cdc40-201ENSMUST00000044166 Cngb1E1AZ71 1325 aa12.5□□□□□ -0.41
Cdc40-201ENSMUST00000044166 NacadQ5SWP3 1504 aa12.49□□□□□ -0.41
Cdc40-201ENSMUST00000044166 Mier1Q5UAK0 511 aa12.48□□□□□ -0.41
Cdc40-201ENSMUST00000044166 Gab3Q8BSM5 595 aa12.47□□□□□ -0.41
Cdc40-201ENSMUST00000044166 Rsf1E9PWW9 1441 aaKnown RBP12.45□□□□□ -0.42
Cdc40-201ENSMUST00000044166 Chic1Q8CBW7 227 aa12.45□□□□□ -0.42
Cdc40-201ENSMUST00000044166 Sall2Q9QX96 1004 aa12.44□□□□□ -0.42
Cdc40-201ENSMUST00000044166 Anks4bQ8K3X6 423 aa12.4□□□□□ -0.43
Cdc40-201ENSMUST00000044166 Brd4Q9ESU6 1400 aaKnown RBP12.32□□□□□ -0.44
Cdc40-201ENSMUST00000044166 Ccdc88bQ4QRL3 1481 aa12.31□□□□□ -0.44
Cdc40-201ENSMUST00000044166 Ttbk1Q6PCN3 1308 aa12.31□□□□□ -0.44
Cdc40-201ENSMUST00000044166 Aplp2Q06335 707 aa12.29□□□□□ -0.44
Cdc40-201ENSMUST00000044166 Golga3P55937 1487 aa12.29□□□□□ -0.44
Cdc40-201ENSMUST00000044166 Pknox2Q8BG99 474 aa12.29□□□□□ -0.44
Cdc40-201ENSMUST00000044166 Wdr66E9Q743 1299 aa12.24□□□□□ -0.45
Cdc40-201ENSMUST00000044166 Cdk11bP24788 784 aaKnown RBP12.21□□□□□ -0.45
Cdc40-201ENSMUST00000044166 Fam71e1A1L3C1 212 aa12.2□□□□□ -0.46
Cdc40-201ENSMUST00000044166 Sycp2Q9CUU3 1500 aa12.19□□□□□ -0.46
Cdc40-201ENSMUST00000044166 ClspnQ80YR7 1315 aa12.18□□□□□ -0.46
Cdc40-201ENSMUST00000044166 Nop58Q6DFW4 536 aaKnown RBP12.17□□□□□ -0.46
Cdc40-201ENSMUST00000044166 Aebp2Q9Z248 504 aaKnown RBP12.17□□□□□ -0.46
Cdc40-201ENSMUST00000044166 UbtfP25976 765 aaKnown RBP12.17□□□□□ -0.46
Cdc40-201ENSMUST00000044166 Cecr2E9Q2Z1 1453 aa12.14□□□□□ -0.47
Cdc40-201ENSMUST00000044166 Synj1Q8CHC4 1574 aa12.12□□□□□ -0.47
Cdc40-201ENSMUST00000044166 Hdac5Q9Z2V6 1113 aa12.12□□□□□ -0.47
Cdc40-201ENSMUST00000044166 Esf1Q3V1V3 845 aaKnown RBP12.11□□□□□ -0.47
Cdc40-201ENSMUST00000044166 Mapk8ip2Q9ERE9 830 aa12.06□□□□□ -0.48
Cdc40-201ENSMUST00000044166 Top2bQ64511 1612 aa12.05□□□□□ -0.48
Cdc40-201ENSMUST00000044166 TonslQ6NZL6 1363 aa12.04□□□□□ -0.48
Cdc40-201ENSMUST00000044166 Fgd1P52734 960 aa12.03□□□□□ -0.48
Cdc40-201ENSMUST00000044166 CftrP26361 1476 aa12.02□□□□□ -0.48
Cdc40-201ENSMUST00000044166 Rapgef2Q8CHG7 1496 aa12.02□□□□□ -0.48
Cdc40-201ENSMUST00000044166 Ppargc1bQ8VHJ7 1014 aa11.99□□□□□ -0.49
Cdc40-201ENSMUST00000044166 Myt1lP97500 1187 aa11.94□□□□□ -0.5
Cdc40-201ENSMUST00000044166 NrdcQ8BHG1 1161 aa11.94□□□□□ -0.5
Cdc40-201ENSMUST00000044166 Cep162Q6ZQ06 1403 aa11.93□□□□□ -0.5
Cdc40-201ENSMUST00000044166 Cttnbp2B9EJA2 1648 aa11.93□□□□□ -0.5
Cdc40-201ENSMUST00000044166 Cc2d2aQ8CFW7 1633 aa11.92□□□□□ -0.5
Cdc40-201ENSMUST00000044166 Plcd4Q8K3R3 807 aa11.91□□□□□ -0.5
Cdc40-201ENSMUST00000044166 Gtf3c5Q8R2T8 520 aa11.9□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Fmn1Q05860 1466 aa11.89□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Top2aQ01320 1528 aaKnown RBP11.88□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Clip1Q922J3 1391 aa11.86□□□□□ -0.51
Cdc40-201ENSMUST00000044166 BicraF8VPZ9 1578 aa11.85□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Tnnt3Q9QZ47 272 aa11.85□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Npm2Q80W85 207 aa11.84□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Zfp777B9EKF4 885 aa11.84□□□□□ -0.51
Cdc40-201ENSMUST00000044166 Ncapd3Q6ZQK0 1506 aa11.83□□□□□ -0.52
Cdc40-201ENSMUST00000044166 Plekhg3Q4VAC9 1341 aa11.83□□□□□ -0.52
Cdc40-201ENSMUST00000044166 SafbD3YXK2 937 aaKnown RBP11.82□□□□□ -0.52
Cdc40-201ENSMUST00000044166 Il27Q8K3I6 234 aa11.81□□□□□ -0.52
Cdc40-201ENSMUST00000044166 CatipB9EKE5 520 aa11.78□□□□□ -0.52
Cdc40-201ENSMUST00000044166 Eif5bQ05D44 1216 aaKnown RBP11.76□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Smarca4Q3TKT4 1613 aaKnown RBP11.75□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Gtf3c3Q3TMP1 882 aa11.75□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Hnrnpul2Q00PI9 745 aaKnown RBP11.74□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Eif4g1Q6NZJ6 1600 aaKnown RBP11.72□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Dnajc5bQ9CQ94 199 aa11.72□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Taok2Q6ZQ29 1240 aa11.71□□□□□ -0.53
Cdc40-201ENSMUST00000044166 Eid3Q3V124 375 aa11.69□□□□□ -0.54
Cdc40-201ENSMUST00000044166 BccipQ9CWI3 316 aa11.67□□□□□ -0.54
Retrieved 100 of 22,080 RNA–protein pairs in 15.9 ms