RNA–Protein interactions for RNA: ENSMUST00000025521.8

Cdx1-201, Transcript of Homeobox protein CDX-1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Cdx1, Length 1,750 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1-201ENSMUST00000025521 NischQ80TM9 1593 aa41.55■■■■■ 4.24
Cdx1-201ENSMUST00000025521 Gm35339A0A140LHH9 1649 aa41.4■■■■■ 4.22
Cdx1-201ENSMUST00000025521 Abcc9P70170 1546 aa40.45■■■■■ 4.07
Cdx1-201ENSMUST00000025521 Abcc8B2RUS7 1588 aa39.62■■■■□ 3.93
Cdx1-201ENSMUST00000025521 Rhox8Q6VSS7 320 aa37.59■■■■□ 3.61
Cdx1-201ENSMUST00000025521 Rtl1Q7M732 1744 aa37.57■■■■□ 3.61
Cdx1-201ENSMUST00000025521 Dcaf1Q80TR8 1506 aa37.13■■■■□ 3.53
Cdx1-201ENSMUST00000025521 ScribQ80U72 1612 aa37.13■■■■□ 3.53
Cdx1-201ENSMUST00000025521 Ccdc180J3QNE4 1664 aa36.61■■■■□ 3.45
Cdx1-201ENSMUST00000025521 Rb1cc1Q9ESK9 1588 aa36.4■■■■□ 3.42
Cdx1-201ENSMUST00000025521 Kdm5dQ62240 1548 aa36.31■■■■□ 3.4
Cdx1-201ENSMUST00000025521 NacadQ5SWP3 1504 aa36.14■■■■□ 3.38
Cdx1-201ENSMUST00000025521 Zcchc6Q5BLK4 1491 aaKnown RBP36.06■■■■□ 3.36
Cdx1-201ENSMUST00000025521 Baz1aO88379 1555 aa36.03■■■■□ 3.36
Cdx1-201ENSMUST00000025521 Crybg2B7ZCC2 1516 aa35.61■■■■□ 3.29
Cdx1-201ENSMUST00000025521 Sycp2Q9CUU3 1500 aa35.34■■■■□ 3.25
Cdx1-201ENSMUST00000025521 Smarca2Q6DIC0 1577 aa35.21■■■■□ 3.23
Cdx1-201ENSMUST00000025521 Ccdc136Q3TVA9 1136 aa34.85■■■■□ 3.17
Cdx1-201ENSMUST00000025521 HrcG5E8J6 738 aa34.74■■■■□ 3.15
Cdx1-201ENSMUST00000025521 BicraF8VPZ9 1578 aa34.58■■■■□ 3.13
Cdx1-201ENSMUST00000025521 Trim41Q5NCC3 630 aa34.49■■■■□ 3.11
Cdx1-201ENSMUST00000025521 Brd4Q9ESU6 1400 aaKnown RBP34.24■■■■□ 3.07
Cdx1-201ENSMUST00000025521 Cecr2E9Q2Z1 1453 aa34.19■■■■□ 3.06
Cdx1-201ENSMUST00000025521 Synj1Q8CHC4 1574 aa33.95■■■■□ 3.03
Cdx1-201ENSMUST00000025521 Cep164Q5DU05 1446 aa33.9■■■■□ 3.02
Cdx1-201ENSMUST00000025521 CftrP26361 1476 aa33.8■■■■□ 3
Cdx1-201ENSMUST00000025521 Cttnbp2B9EJA2 1648 aa33.79■■■■□ 3
Cdx1-201ENSMUST00000025521 Smarca4Q3TKT4 1613 aaKnown RBP33.77■■■■□ 3
Cdx1-201ENSMUST00000025521 Golga3P55937 1487 aa33.73■■■□□ 2.99
Cdx1-201ENSMUST00000025521 Top2bQ64511 1612 aa33.56■■■□□ 2.96
Cdx1-201ENSMUST00000025521 Rpgrip1Q9EPQ2 1331 aa33.53■■■□□ 2.96
Cdx1-201ENSMUST00000025521 Rsf1E9PWW9 1441 aaKnown RBP33.49■■■□□ 2.95
Cdx1-201ENSMUST00000025521 Cngb1E1AZ71 1325 aa33.43■■■□□ 2.94
Cdx1-201ENSMUST00000025521 Ccdc88bQ4QRL3 1481 aa33.31■■■□□ 2.92
Cdx1-201ENSMUST00000025521 Iqgap2Q3UQ44 1575 aa33.3■■■□□ 2.92
Cdx1-201ENSMUST00000025521 Chic1Q8CBW7 227 aa33.24■■■□□ 2.91
Cdx1-201ENSMUST00000025521 Atad2bE9Q166 1460 aaKnown RBP33.23■■■□□ 2.91
Cdx1-201ENSMUST00000025521 Esf1Q3V1V3 845 aaKnown RBP33.16■■■□□ 2.9
Cdx1-201ENSMUST00000025521 Acin1Q9JIX8 1338 aaKnown RBP33.14■■■□□ 2.9
Cdx1-201ENSMUST00000025521 Pds5bQ4VA53 1446 aaKnown RBP33.12■■■□□ 2.89
Cdx1-201ENSMUST00000025521 Cc2d2aQ8CFW7 1633 aa33.1■■■□□ 2.89
Cdx1-201ENSMUST00000025521 Fmn1Q05860 1466 aa32.98■■■□□ 2.87
Cdx1-201ENSMUST00000025521 Ehmt2Q9Z148 1263 aaKnown RBP32.82■■■□□ 2.84
Cdx1-201ENSMUST00000025521 Top2aQ01320 1528 aaKnown RBP32.79■■■□□ 2.84
Cdx1-201ENSMUST00000025521 Wdr62Q3U3T8 1523 aa32.71■■■□□ 2.83
Cdx1-201ENSMUST00000025521 Gab3Q8BSM5 595 aa32.7■■■□□ 2.83
Cdx1-201ENSMUST00000025521 TnnQ80Z71 1560 aa32.67■■■□□ 2.82
Cdx1-201ENSMUST00000025521 Frmpd1A2AKB4 1549 aa32.63■■■□□ 2.81
Cdx1-201ENSMUST00000025521 Rapgef2Q8CHG7 1496 aa32.59■■■□□ 2.81
Cdx1-201ENSMUST00000025521 Ercc6F8VPZ5 1481 aa32.48■■■□□ 2.79
Cdx1-201ENSMUST00000025521 Unc13aQ4KUS2 1712 aa32.44■■■□□ 2.78
Cdx1-201ENSMUST00000025521 Lamc3Q9R0B6 1581 aa32.42■■■□□ 2.78
Cdx1-201ENSMUST00000025521 Eif4g1Q6NZJ6 1600 aaKnown RBP32.25■■■□□ 2.75
Cdx1-201ENSMUST00000025521 Cep162Q6ZQ06 1403 aa32.24■■■□□ 2.75
Cdx1-201ENSMUST00000025521 Thoc2B1AZI6 1594 aaKnown RBP32.21■■■□□ 2.75
Cdx1-201ENSMUST00000025521 Camsap1A2AHC3 1581 aa32.06■■■□□ 2.72
Cdx1-201ENSMUST00000025521 Kif15Q6P9L6 1387 aa32.03■■■□□ 2.72
Cdx1-201ENSMUST00000025521 NrkQ9R0G8 1455 aa31.98■■■□□ 2.71
Cdx1-201ENSMUST00000025521 Phldb1Q6PDH0 1371 aaKnown RBP31.95■■■□□ 2.71
Cdx1-201ENSMUST00000025521 Fam135aQ6NS59 1506 aa31.86■■■□□ 2.69
Cdx1-201ENSMUST00000025521 Shroom4Q1W617 1475 aa31.85■■■□□ 2.69
Cdx1-201ENSMUST00000025521 Ccdc18Q640L5 1455 aa31.85■■■□□ 2.69
Cdx1-201ENSMUST00000025521 Npm2Q80W85 207 aa31.84■■■□□ 2.69
Cdx1-201ENSMUST00000025521 Arhgap35Q91YM2 1499 aa31.83■■■□□ 2.69
Cdx1-201ENSMUST00000025521 PtprkP35822 1457 aa31.81■■■□□ 2.68
Cdx1-201ENSMUST00000025521 Map3k1P53349 1493 aa31.76■■■□□ 2.67
Cdx1-201ENSMUST00000025521 Grin2bQ01097 1482 aa31.76■■■□□ 2.67
Cdx1-201ENSMUST00000025521 Myt1lP97500 1187 aa31.66■■■□□ 2.66
Cdx1-201ENSMUST00000025521 Mier1Q5UAK0 511 aa31.63■■■□□ 2.65
Cdx1-201ENSMUST00000025521 NefmP08553 848 aa31.6■■■□□ 2.65
Cdx1-201ENSMUST00000025521 Cux2P70298 1426 aa31.6■■■□□ 2.65
Cdx1-201ENSMUST00000025521 Clip1Q922J3 1391 aa31.58■■■□□ 2.65
Cdx1-201ENSMUST00000025521 Il27Q8K3I6 234 aa31.54■■■□□ 2.64
Cdx1-201ENSMUST00000025521 Baz1bQ9Z277 1479 aa31.52■■■□□ 2.64
Cdx1-201ENSMUST00000025521 Mroh2bQ7M6Y6 1581 aa31.52■■■□□ 2.64
Cdx1-201ENSMUST00000025521 AqrQ8CFQ3 1481 aaKnown RBP31.49■■■□□ 2.63
Cdx1-201ENSMUST00000025521 Ubl4bQ9CQ84 188 aa31.48■■■□□ 2.63
Cdx1-201ENSMUST00000025521 Eea1Q8BL66 1411 aa31.45■■■□□ 2.63
Cdx1-201ENSMUST00000025521 Efcab5A0JP43 1406 aa31.43■■■□□ 2.62
Cdx1-201ENSMUST00000025521 Erich3F6QRE9 1637 aa31.41■■■□□ 2.62
Cdx1-201ENSMUST00000025521 Arap1Q4LDD4 1452 aa31.38■■■□□ 2.61
Cdx1-201ENSMUST00000025521 LrpprcQ6PB66 1392 aaKnown RBP31.37■■■□□ 2.61
Cdx1-201ENSMUST00000025521 PogzQ8BZH4 1409 aaKnown RBP31.36■■■□□ 2.61
Cdx1-201ENSMUST00000025521 Arhgef5E9Q7D5 1581 aa31.35■■■□□ 2.61
Cdx1-201ENSMUST00000025521 UbtfP25976 765 aaKnown RBP31.33■■■□□ 2.61
Cdx1-201ENSMUST00000025521 Npm1Q61937 292 aaKnown RBP31.32■■■□□ 2.6
Cdx1-201ENSMUST00000025521 Duox2A2AQ99 1517 aa31.28■■■□□ 2.6
Cdx1-201ENSMUST00000025521 Ankrd26Q811D2 1581 aa31.27■■■□□ 2.6
Cdx1-201ENSMUST00000025521 Pcgf6Q99NA9 353 aa31.26■■■□□ 2.59
Cdx1-201ENSMUST00000025521 Setd5Q5XJV7 1441 aa31.24■■■□□ 2.59
Cdx1-201ENSMUST00000025521 Tiam1Q60610 1591 aa31.19■■■□□ 2.58
Cdx1-201ENSMUST00000025521 Carmil1Q6EDY6 1374 aa31.17■■■□□ 2.58
Cdx1-201ENSMUST00000025521 Ncapd3Q6ZQK0 1506 aa31.17■■■□□ 2.58
Cdx1-201ENSMUST00000025521 Plekhg3Q4VAC9 1341 aa31.13■■■□□ 2.57
Cdx1-201ENSMUST00000025521 SynmQ70IV5 1561 aa31.13■■■□□ 2.57
Cdx1-201ENSMUST00000025521 Lmo7E9PYF4 1699 aaKnown RBP31.12■■■□□ 2.57
Cdx1-201ENSMUST00000025521 Samd9lQ69Z37 1561 aa31.12■■■□□ 2.57
Cdx1-201ENSMUST00000025521 Zeb1Q64318 1117 aa31.1■■■□□ 2.57
Cdx1-201ENSMUST00000025521 Dhx29Q6PGC1 1365 aaKnown RBP31.07■■■□□ 2.56
Cdx1-201ENSMUST00000025521 Mrc2Q64449 1479 aa31.06■■■□□ 2.56
Retrieved 100 of 22,080 RNA–protein pairs in 13.8 ms