RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeastyeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS1YKR001C ELM1P32801 640 aa6.07□□□□□ -1.44
VPS1YKR001C TIF3P34167 436 aaKnown RBP6.07□□□□□ -1.44
VPS1YKR001C ICP55P40051 511 aa6.07□□□□□ -1.44
VPS1YKR001C RRP46P53256 223 aaPredicted RBP6.07□□□□□ -1.44
VPS1YKR001C SLX4Q12098 748 aa6.07□□□□□ -1.44
VPS1YKR001C ROX1P25042 368 aa6.07□□□□□ -1.44
VPS1YKR001C RAD16P31244 790 aa6.07□□□□□ -1.44
VPS1YKR001C ACP1P32463 125 aa6.07□□□□□ -1.44
VPS1YKR001C HIR2P32480 875 aa6.07□□□□□ -1.44
VPS1YKR001C RPN12P32496 274 aa6.07□□□□□ -1.44
VPS1YKR001C TFC3P34111 1160 aa6.07□□□□□ -1.44
VPS1YKR001C SAS3P34218 831 aa6.07□□□□□ -1.44
VPS1YKR001C UBP13P38187 747 aa6.07□□□□□ -1.44
VPS1YKR001C YPP1P46951 817 aa6.07□□□□□ -1.44
VPS1YKR001C UBP10P53874 792 aaPredicted RBP6.07□□□□□ -1.44
VPS1YKR001C SVL3Q03088 825 aaKnown RBP6.07□□□□□ -1.44
VPS1YKR001C ARV1Q06541 321 aa6.07□□□□□ -1.44
VPS1YKR001C ARR2Q06597 130 aa6.07□□□□□ -1.44
VPS1YKR001C PUF4P25339 888 aaKnown RBP RIP-Chip data6.06□□□□□ -1.44 RIP-Chip
VPS1YKR001C DLD1P32891 587 aa6.06□□□□□ -1.44
VPS1YKR001C NUF2P33895 451 aa6.06□□□□□ -1.44
VPS1YKR001C MEF2P39677 819 aa6.06□□□□□ -1.44
VPS1YKR001C SEC26P41810 973 aaKnown RBP6.06□□□□□ -1.44
VPS1YKR001C RPT4P53549 437 aaKnown RBP6.06□□□□□ -1.44
VPS1YKR001C VPS20Q04272 221 aa6.06□□□□□ -1.44
VPS1YKR001C KEX1P09620 729 aa6.05□□□□□ -1.44
VPS1YKR001C VMA1P17255 1071 aaKnown RBP6.05□□□□□ -1.44
VPS1YKR001C APN1P22936 367 aa6.05□□□□□ -1.44
VPS1YKR001C RKM3P38222 552 aa6.05□□□□□ -1.44
VPS1YKR001C GSM1P42950 618 aa6.05□□□□□ -1.44
VPS1YKR001C MPC54Q08550 464 aa6.05□□□□□ -1.44
VPS1YKR001C COQ4O13525 335 aa6.05□□□□□ -1.44
VPS1YKR001C MER1P16523 270 aa6.05□□□□□ -1.44
VPS1YKR001C SLD2P34252 453 aa6.05□□□□□ -1.44
VPS1YKR001C YTA6P40328 754 aa6.05□□□□□ -1.44
VPS1YKR001C CST6P40535 587 aa6.05□□□□□ -1.44
VPS1YKR001C TIM54P47045 478 aa6.05□□□□□ -1.44
VPS1YKR001C SHE4P51534 789 aa6.05□□□□□ -1.44
VPS1YKR001C FCP1Q03254 732 aa6.05□□□□□ -1.44
VPS1YKR001C RSM28Q03430 361 aa6.05□□□□□ -1.44
VPS1YKR001C PRP42Q03776 544 aaKnown RBP6.05□□□□□ -1.44
VPS1YKR001C PEX19Q07418 342 aa6.05□□□□□ -1.44
VPS1YKR001C KIN1P13185 1064 aa6.04□□□□□ -1.44
VPS1YKR001C PET123P17558 318 aa6.04□□□□□ -1.44
VPS1YKR001C RPB4P20433 221 aaPredicted RBP6.04□□□□□ -1.44
VPS1YKR001C MRE11P32829 692 aa6.04□□□□□ -1.44
VPS1YKR001C SWH1P35845 1188 aa6.04□□□□□ -1.44
VPS1YKR001C SPL2P38839 148 aa6.04□□□□□ -1.44
VPS1YKR001C VPS41P38959 992 aa6.04□□□□□ -1.44
VPS1YKR001C YER034WP40022 185 aaKnown RBP6.04□□□□□ -1.44
VPS1YKR001C UTP7P40055 554 aaKnown RBP6.04□□□□□ -1.44
VPS1YKR001C RNH70P53331 553 aa6.04□□□□□ -1.44
VPS1YKR001C ADE12P80210 433 aaKnown RBP6.04□□□□□ -1.44
VPS1YKR001C SPO19Q03029 223 aa6.04□□□□□ -1.44
VPS1YKR001C DUR1,2P32528 1835 aaKnown RBP6.04□□□□□ -1.44
VPS1YKR001C CLB1P24868 471 aa6.04□□□□□ -1.44
VPS1YKR001C ANP1P32629 500 aa6.04□□□□□ -1.44
VPS1YKR001C SWD1P39706 426 aa6.04□□□□□ -1.44
VPS1YKR001C NDC80P40460 691 aa6.04□□□□□ -1.44
VPS1YKR001C SNZ1Q03148 297 aa6.04□□□□□ -1.44
VPS1YKR001C SSQ1Q05931 657 aaPredicted RBP6.04□□□□□ -1.44
VPS1YKR001C SSB1P11484 613 aaKnown RBP6.03□□□□□ -1.44
VPS1YKR001C GAL2P13181 574 aa6.03□□□□□ -1.44
VPS1YKR001C RPC31P17890 251 aa6.03□□□□□ -1.44
VPS1YKR001C MRPL25P23369 157 aa6.03□□□□□ -1.44
VPS1YKR001C TTI1P36097 1038 aa6.03□□□□□ -1.44
VPS1YKR001C ATG14P38270 344 aa6.03□□□□□ -1.44
VPS1YKR001C SLN1P39928 1220 aaPredicted RBP6.03□□□□□ -1.44
VPS1YKR001C SSB2P40150 613 aaKnown RBP6.03□□□□□ -1.44
VPS1YKR001C YIR042CP40586 236 aa6.03□□□□□ -1.44
VPS1YKR001C SUM1P46676 1062 aa6.03□□□□□ -1.44
VPS1YKR001C SGD1Q06132 899 aa6.03□□□□□ -1.44
VPS1YKR001C SWI1P09547 1314 aa6.03□□□□□ -1.44
VPS1YKR001C ASH1P34233 588 aa6.02□□□□□ -1.45
VPS1YKR001C TBS1P38114 1094 aa6.02□□□□□ -1.45
VPS1YKR001C ERC1P38767 581 aa6.02□□□□□ -1.45
VPS1YKR001C CIC1P38779 376 aaKnown RBP6.02□□□□□ -1.45
VPS1YKR001C PET100P38958 111 aa6.02□□□□□ -1.45
VPS1YKR001C UTP18P40362 594 aaPredicted RBP6.02□□□□□ -1.45
VPS1YKR001C MPH1P40562 993 aa6.02□□□□□ -1.45
VPS1YKR001C MTC3P53077 123 aa6.02□□□□□ -1.45
VPS1YKR001C RTC4P53850 401 aa6.02□□□□□ -1.45
VPS1YKR001C JIP4Q03361 876 aa6.02□□□□□ -1.45
VPS1YKR001C YLR225CQ05948 407 aaKnown RBP6.02□□□□□ -1.45
VPS1YKR001C CSR1Q06705 408 aaKnown RBP6.02□□□□□ -1.45
VPS1YKR001C YRM1Q12340 786 aa6.02□□□□□ -1.45
VPS1YKR001C ARP8Q12386 881 aaKnown RBP RIP-Chip data6.02□□□□□ -1.45not detected
VPS1YKR001C SEC39Q12745 709 aa6.02□□□□□ -1.45
VPS1YKR001C NAT1P12945 854 aaKnown RBP6.02□□□□□ -1.45
VPS1YKR001C MGM1P32266 881 aa6.02□□□□□ -1.45
VPS1YKR001C YEL1P34225 687 aa6.02□□□□□ -1.45
VPS1YKR001C TOM71P38825 639 aaKnown RBP6.02□□□□□ -1.45
VPS1YKR001C NIT1P40447 199 aa6.02□□□□□ -1.45
VPS1YKR001C IRR1P40541 1150 aa6.02□□□□□ -1.45
VPS1YKR001C SUB2Q07478 446 aaKnown RBP6.02□□□□□ -1.45
VPS1YKR001C ARG82P07250 355 aa6.01□□□□□ -1.45
VPS1YKR001C PET494P07390 489 aaPredicted RBP6.01□□□□□ -1.45
VPS1YKR001C SEC15P22224 910 aa6.01□□□□□ -1.45
VPS1YKR001C STE11P23561 717 aa6.01□□□□□ -1.45
VPS1YKR001C PKC1P24583 1151 aa6.01□□□□□ -1.45
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms