RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 TRIM46Q7Z4K8 759 aa8.84□□□□□ -0.99
DNMT1-220ENST00000589351 HLA-CQ95604 372 aa8.84□□□□□ -0.99
DNMT1-220ENST00000589351 ARXQ96QS3 562 aa8.84□□□□□ -0.99
DNMT1-220ENST00000589351 CLTCQ00610 1675 aaKnown RBP8.84□□□□□ -0.99
DNMT1-220ENST00000589351 SPATA31D1Q6ZQQ2 1576 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 RTEL1-TNFRSF6BF6WH68 1400 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 PTPRKQ15262 1439 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 TSPY4P0CV99 314 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 TSPY10P0CW01 314 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 SMYD5Q6GMV2 418 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 THEMISQ8N1K5 641 aaPredicted RBP8.83□□□□□ -1
DNMT1-220ENST00000589351 IRF7Q92985 503 aa8.83□□□□□ -1
DNMT1-220ENST00000589351 WASHC2CQ9Y4E1 1318 aa8.82□□□□□ -1
DNMT1-220ENST00000589351 ADGBQ8N7X0 1667 aa8.82□□□□□ -1
DNMT1-220ENST00000589351 KIF3BO15066 747 aa8.82□□□□□ -1
DNMT1-220ENST00000589351 SIAH2O43255 324 aa8.82□□□□□ -1
DNMT1-220ENST00000589351 ANKLE2Q86XL3 938 aa8.82□□□□□ -1
DNMT1-220ENST00000589351 DHX29Q7Z478 1369 aaKnown RBP8.82□□□□□ -1
DNMT1-220ENST00000589351 CEP170BQ9Y4F5 1589 aaPredicted RBP8.82□□□□□ -1
DNMT1-220ENST00000589351 KDM4AO75164 1064 aa8.81□□□□□ -1
DNMT1-220ENST00000589351 NPAS3Q8IXF0 933 aa8.81□□□□□ -1
DNMT1-220ENST00000589351 INO80Q9ULG1 1556 aaPredicted RBP8.81□□□□□ -1
DNMT1-220ENST00000589351 ZNF644Q9H582 1327 aaPredicted RBP8.8□□□□□ -1
DNMT1-220ENST00000589351 H3BM21 787 aa8.8□□□□□ -1
DNMT1-220ENST00000589351 CAPN5O15484 640 aaPredicted RBP8.8□□□□□ -1
DNMT1-220ENST00000589351 A2ML1A8K2U0 1454 aa8.8□□□□□ -1
DNMT1-220ENST00000589351 TCOF1Q13428 1488 aaKnown RBP8.8□□□□□ -1
DNMT1-220ENST00000589351 PLXNC1O60486 1568 aa8.8□□□□□ -1
DNMT1-220ENST00000589351 ZNF142P52746 1687 aaPredicted RBP8.8□□□□□ -1
DNMT1-220ENST00000589351 MYO3AQ8NEV4 1616 aa8.8□□□□□ -1
DNMT1-220ENST00000589351 ERBB4Q15303 1308 aa8.8□□□□□ -1
DNMT1-220ENST00000589351 TNRQ92752 1358 aa8.79□□□□□ -1
DNMT1-220ENST00000589351 PIP4K2BP78356 416 aa8.79□□□□□ -1
DNMT1-220ENST00000589351 FBXO31Q5XUX0 539 aaPredicted RBP8.78□□□□□ -1
DNMT1-220ENST00000589351 PTCRAQ6ISU1 281 aaPredicted RBP8.78□□□□□ -1
DNMT1-220ENST00000589351 EHBP1L1Q8N3D4 1523 aa8.78□□□□□ -1
DNMT1-220ENST00000589351 CEP162Q5TB80 1403 aa8.78□□□□□ -1
DNMT1-220ENST00000589351 MBD5Q9P267 1494 aa8.77□□□□□ -1
DNMT1-220ENST00000589351 CPS1P31327 1500 aa8.77□□□□□ -1.01
DNMT1-220ENST00000589351 FAM135AQ9P2D6 1515 aa8.77□□□□□ -1.01
DNMT1-220ENST00000589351 JUNDP17535 347 aa8.77□□□□□ -1.01
DNMT1-220ENST00000589351 EHBP1Q8NDI1 1231 aa8.77□□□□□ -1.01
DNMT1-220ENST00000589351 SYMPKQ92797 1274 aaKnown RBP8.77□□□□□ -1.01
DNMT1-220ENST00000589351 WASF2Q9Y6W5 498 aa8.77□□□□□ -1.01
DNMT1-220ENST00000589351 DNMT1P26358 1616 aaKnown RBP8.76□□□□□ -1.01
DNMT1-220ENST00000589351 GUCA2AQ02747 115 aa8.76□□□□□ -1.01
DNMT1-220ENST00000589351 TPRNQ4KMQ1 711 aa8.76□□□□□ -1.01
DNMT1-220ENST00000589351 MIA2Q96PC5 1412 aa8.76□□□□□ -1.01
DNMT1-220ENST00000589351 CCDC141Q6ZP82 1450 aa8.76□□□□□ -1.01
DNMT1-220ENST00000589351 SHANK2Q9UPX8 1470 aa8.76□□□□□ -1.01
DNMT1-220ENST00000589351 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.75□□□□□ -1.01
DNMT1-220ENST00000589351 TIAM1Q13009 1591 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 HOXA2O43364 376 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 HSPA1LP34931 641 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 USP46P62068 366 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 PZPP20742 1482 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 NLRP1Q9C000 1473 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 KDM5DQ9BY66 1539 aa8.75□□□□□ -1.01
DNMT1-220ENST00000589351 GPIHBP1Q8IV16 184 aa8.74□□□□□ -1.01
DNMT1-220ENST00000589351 ZFP42Q96MM3 310 aa8.74□□□□□ -1.01
DNMT1-220ENST00000589351 UGGT1Q9NYU2 1555 aa8.73□□□□□ -1.01
DNMT1-220ENST00000589351 NCOA2Q15596 1464 aa8.73□□□□□ -1.01
DNMT1-220ENST00000589351 NUDT12Q9BQG2 462 aa8.73□□□□□ -1.01
DNMT1-220ENST00000589351 POLR1AO95602 1720 aaPredicted RBP8.73□□□□□ -1.01
DNMT1-220ENST00000589351 NPHP4O75161 1426 aaPredicted RBP8.72□□□□□ -1.01
DNMT1-220ENST00000589351 CAMSAP2Q08AD1 1489 aa8.72□□□□□ -1.01
DNMT1-220ENST00000589351 SH3BP2P78314 561 aa8.72□□□□□ -1.01
DNMT1-220ENST00000589351 TULP1O00294 542 aaPredicted RBP8.71□□□□□ -1.02
DNMT1-220ENST00000589351 MDM2Q00987 491 aaPredicted RBP8.71□□□□□ -1.02
DNMT1-220ENST00000589351 EID1Q9Y6B2 187 aa8.71□□□□□ -1.02
DNMT1-220ENST00000589351 MED14O60244 1454 aa8.7□□□□□ -1.02
DNMT1-220ENST00000589351 ARHGEF5Q12774 1597 aa8.7□□□□□ -1.02
DNMT1-220ENST00000589351 SUZ12Q15022 739 aaKnown RBP8.7□□□□□ -1.02
DNMT1-220ENST00000589351 DEPDC5O75140 1603 aa8.69□□□□□ -1.02
DNMT1-220ENST00000589351 HAP1P54257 671 aaPredicted RBP8.69□□□□□ -1.02
DNMT1-220ENST00000589351 NEURL4Q96JN8 1562 aa8.69□□□□□ -1.02
DNMT1-220ENST00000589351 MAP2K5Q13163 448 aa8.68□□□□□ -1.02
DNMT1-220ENST00000589351 TXNDC2Q86VQ3 553 aa8.68□□□□□ -1.02
DNMT1-220ENST00000589351 RETREG3Q86VR2 466 aa8.68□□□□□ -1.02
DNMT1-220ENST00000589351 SOBPA7XYQ1 873 aa8.67□□□□□ -1.02
DNMT1-220ENST00000589351 MED1Q15648 1581 aaPredicted RBP8.67□□□□□ -1.02
DNMT1-220ENST00000589351 ZC3H13Q5T200 1668 aaKnown RBP8.67□□□□□ -1.02
DNMT1-220ENST00000589351 TLL2Q9Y6L7 1015 aa8.67□□□□□ -1.02
DNMT1-220ENST00000589351 IQGAP1P46940 1657 aa8.66□□□□□ -1.02
DNMT1-220ENST00000589351 VWDEQ8N2E2 1590 aa8.66□□□□□ -1.02
DNMT1-220ENST00000589351 MYOM3Q5VTT5 1437 aa8.66□□□□□ -1.02
DNMT1-220ENST00000589351 KANK1Q14678 1352 aa8.66□□□□□ -1.02
DNMT1-220ENST00000589351 IRF6O14896 467 aa8.66□□□□□ -1.02
DNMT1-220ENST00000589351 LINC01559Q495D7 138 aa8.66□□□□□ -1.02
DNMT1-220ENST00000589351 MRPL14Q6P1L8 145 aaKnown RBP8.66□□□□□ -1.02
DNMT1-220ENST00000589351 PURBQ96QR8 312 aaKnown RBP8.66□□□□□ -1.02
DNMT1-220ENST00000589351 EIF2AK4Q9P2K8 1649 aaKnown RBP8.65□□□□□ -1.02
DNMT1-220ENST00000589351 MAST1Q9Y2H9 1570 aa8.65□□□□□ -1.02
DNMT1-220ENST00000589351 LRRC9Q6ZRR7 1453 aa8.65□□□□□ -1.02
DNMT1-220ENST00000589351 CCNYL3P0C7X3 344 aa8.65□□□□□ -1.02
DNMT1-220ENST00000589351 VSIG8P0DPA2 414 aa8.65□□□□□ -1.02
DNMT1-220ENST00000589351 BAP1Q92560 729 aa8.65□□□□□ -1.02
DNMT1-220ENST00000589351 RNF17Q9BXT8 1623 aaKnown RBP8.65□□□□□ -1.03
DNMT1-220ENST00000589351 ABCC3O15438 1527 aa8.64□□□□□ -1.03
DNMT1-220ENST00000589351 LRRC7Q96NW7 1537 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms