RNA–Protein interactions for RNA: ENST00000589351.5

DNMT1-220, Transcript of DNA methyltransferase 1, humanhuman

TSL 2

Gene DNMT1, Length 672 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-220ENST00000589351 AEBP2Q6ZN18 517 aaPredicted RBP25.74■■□□□ 1.71
DNMT1-220ENST00000589351 CHIC1Q5VXU3 224 aa24.09■■□□□ 1.45
DNMT1-220ENST00000589351 SENP3Q9H4L4 574 aaPredicted RBP21.94■■□□□ 1.1
DNMT1-220ENST00000589351 PHF23Q9BUL5 403 aaPredicted RBP21.65■■□□□ 1.06
DNMT1-220ENST00000589351 FOXD1Q16676 465 aa20.54■□□□□ 0.88
DNMT1-220ENST00000589351 POTEDQ86YR6 584 aa19.44■□□□□ 0.7
DNMT1-220ENST00000589351 MSH5O43196 834 aa19.29■□□□□ 0.68
DNMT1-220ENST00000589351 PIAS4Q8N2W9 510 aaPredicted RBP19.09■□□□□ 0.65
DNMT1-220ENST00000589351 PLPPR3Q6T4P5 718 aa19.07■□□□□ 0.64
DNMT1-220ENST00000589351 PPP6R1Q9UPN7 881 aa18.98■□□□□ 0.63
DNMT1-220ENST00000589351 ADRA2BP18089 450 aa18.89■□□□□ 0.61
DNMT1-220ENST00000589351 MAPK8IP2Q13387 824 aaPredicted RBP17.47■□□□□ 0.39
DNMT1-220ENST00000589351 DMRT2Q9Y5R5 561 aa17.36■□□□□ 0.37
DNMT1-220ENST00000589351 SCAF1Q9H7N4 1312 aaKnown RBP17.21■□□□□ 0.34
DNMT1-220ENST00000589351 CACNB1Q02641 598 aaPredicted RBP16.79■□□□□ 0.28
DNMT1-220ENST00000589351 PPP4R3CPQ6ZMV5 832 aa16.7■□□□□ 0.26
DNMT1-220ENST00000589351 DCAF8L1A6NGE4 600 aa16.69■□□□□ 0.26
DNMT1-220ENST00000589351 HOXD11P31277 338 aaPredicted RBP16.59■□□□□ 0.25
DNMT1-220ENST00000589351 RNF39Q9H2S5 420 aa16.46■□□□□ 0.23
DNMT1-220ENST00000589351 CNKSR2Q8WXI2 1034 aa16.43■□□□□ 0.22
DNMT1-220ENST00000589351 RNF216Q9NWF9 866 aaPredicted RBP16.37■□□□□ 0.21
DNMT1-220ENST00000589351 C1QBPQ07021 282 aaKnown RBP16.18■□□□□ 0.18
DNMT1-220ENST00000589351 DNAJC5BQ9UF47 199 aa16.04■□□□□ 0.16
DNMT1-220ENST00000589351 NCBP3Q53F19 620 aaKnown RBP15.91■□□□□ 0.14
DNMT1-220ENST00000589351 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.81■□□□□ 0.123e-6■□□□□ 9.8
DNMT1-220ENST00000589351 NPM3O75607 178 aaKnown RBP15.74■□□□□ 0.11
DNMT1-220ENST00000589351 U3KPZ7 1027 aaPredicted RBP15.46■□□□□ 0.07
DNMT1-220ENST00000589351 SPINK5Q9NQ38 1064 aaPredicted RBP15.36■□□□□ 0.05
DNMT1-220ENST00000589351 CAPN15O75808 1086 aa15.32■□□□□ 0.04
DNMT1-220ENST00000589351 DSG3P32926 999 aa15.31■□□□□ 0.04
DNMT1-220ENST00000589351 KCNA4P22459 653 aa15.16■□□□□ 0.02
DNMT1-220ENST00000589351 POTEHQ6S545 545 aa15.15■□□□□ 0.02
DNMT1-220ENST00000589351 SLC4A2P04920 1241 aa15.13■□□□□ 0.01
DNMT1-220ENST00000589351 TRHP20396 242 aaPredicted RBP15□□□□□ -0.01
DNMT1-220ENST00000589351 ABCB7O75027 752 aa14.95□□□□□ -0.02
DNMT1-220ENST00000589351 APLP2Q06481 763 aa14.91□□□□□ -0.02
DNMT1-220ENST00000589351 ZNF219Q9P2Y4 722 aaPredicted RBP14.91□□□□□ -0.02
DNMT1-220ENST00000589351 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.84□□□□□ -0.03
DNMT1-220ENST00000589351 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
DNMT1-220ENST00000589351 SAMD1Q6SPF0 538 aaPredicted RBP14.77□□□□□ -0.05
DNMT1-220ENST00000589351 RBM42Q9BTD8 480 aaKnown RBP14.56□□□□□ -0.08
DNMT1-220ENST00000589351 MYCNP04198 464 aaPredicted RBP14.52□□□□□ -0.09
DNMT1-220ENST00000589351 POLA2Q14181 598 aa14.52□□□□□ -0.09
DNMT1-220ENST00000589351 CHRDL2Q6WN34 429 aa14.42□□□□□ -0.1
DNMT1-220ENST00000589351 ATF5Q9Y2D1 282 aaPredicted RBP14.29□□□□□ -0.12
DNMT1-220ENST00000589351 SLC4A1APQ9BWU0 796 aaKnown RBP14.22□□□□□ -0.13
DNMT1-220ENST00000589351 FOXD4L1Q9NU39 408 aa14.21□□□□□ -0.13
DNMT1-220ENST00000589351 AKT1S1Q96B36 256 aa14.19□□□□□ -0.14
DNMT1-220ENST00000589351 ZBTB12Q9Y330 459 aaPredicted RBP14.14□□□□□ -0.15
DNMT1-220ENST00000589351 REM2Q8IYK8 340 aaPredicted RBP14.08□□□□□ -0.16
DNMT1-220ENST00000589351 OSCARQ8IYS5 282 aa14.07□□□□□ -0.16
DNMT1-220ENST00000589351 SP7Q8TDD2 431 aaPredicted RBP14.04□□□□□ -0.16
DNMT1-220ENST00000589351 PIP4P2Q8N4L2 257 aa14.02□□□□□ -0.17
DNMT1-220ENST00000589351 ZBTB22O15209 634 aa13.95□□□□□ -0.18
DNMT1-220ENST00000589351 PITPNM1O00562 1244 aa13.93□□□□□ -0.18
DNMT1-220ENST00000589351 FXR2P51116 673 aaKnown RBP eCLIP13.87□□□□□ -0.191e-6■□□□□ 10.6
DNMT1-220ENST00000589351 HAX1O00165 279 aa13.85□□□□□ -0.19
DNMT1-220ENST00000589351 ATXN8OSP0DMR3 200 aa13.78□□□□□ -0.2
DNMT1-220ENST00000589351 NISCHQ9Y2I1 1504 aa13.77□□□□□ -0.21
DNMT1-220ENST00000589351 SPDYE2BA6NHP3 402 aa13.7□□□□□ -0.22
DNMT1-220ENST00000589351 SPDYE6P0CI01 402 aa13.7□□□□□ -0.22
DNMT1-220ENST00000589351 EVX2Q03828 476 aa13.7□□□□□ -0.22
DNMT1-220ENST00000589351 SPDYE2Q495Y8 402 aa13.7□□□□□ -0.22
DNMT1-220ENST00000589351 FBLN2P98095 1184 aa13.67□□□□□ -0.22
DNMT1-220ENST00000589351 MKRN4PQ13434 485 aaPredicted RBP13.6□□□□□ -0.23
DNMT1-220ENST00000589351 CLEC11AQ9Y240 323 aa13.58□□□□□ -0.24
DNMT1-220ENST00000589351 PRKAR2AP13861 404 aaKnown RBP13.57□□□□□ -0.24
DNMT1-220ENST00000589351 SPDYE1Q8NFV5 336 aaPredicted RBP13.55□□□□□ -0.24
DNMT1-220ENST00000589351 ZNF692Q9BU19 519 aaPredicted RBP13.51□□□□□ -0.25
DNMT1-220ENST00000589351 SSUH2Q9Y2M2 353 aa13.51□□□□□ -0.25
DNMT1-220ENST00000589351 C19orf67A6NJJ6 358 aa13.44□□□□□ -0.26
DNMT1-220ENST00000589351 CHADLQ6NUI6 762 aa13.38□□□□□ -0.27
DNMT1-220ENST00000589351 GABBR2O75899 941 aa13.34□□□□□ -0.27
DNMT1-220ENST00000589351 PABPN1Q86U42 306 aaKnown RBP eCLIP13.31□□□□□ -0.28
DNMT1-220ENST00000589351 PRR29P0C7W0 189 aa13.29□□□□□ -0.28
DNMT1-220ENST00000589351 LHX8Q68G74 356 aa13.18□□□□□ -0.3
DNMT1-220ENST00000589351 CD44P16070 742 aaKnown RBP13.12□□□□□ -0.31
DNMT1-220ENST00000589351 FARP1Q9Y4F1 1045 aaPredicted RBP13.12□□□□□ -0.31
DNMT1-220ENST00000589351 POTEIP0CG38 1075 aa13.08□□□□□ -0.32
DNMT1-220ENST00000589351 CSRNP3Q8WYN3 585 aa13□□□□□ -0.33
DNMT1-220ENST00000589351 CLCN6P51797 869 aa12.94□□□□□ -0.34
DNMT1-220ENST00000589351 CREBZFQ9NS37 354 aa12.9□□□□□ -0.34
DNMT1-220ENST00000589351 ZNF579Q8NAF0 562 aaKnown RBP12.88□□□□□ -0.35
DNMT1-220ENST00000589351 DCBLD2Q96PD2 775 aa12.88□□□□□ -0.35
DNMT1-220ENST00000589351 ZRANB1Q9UGI0 708 aa12.88□□□□□ -0.35
DNMT1-220ENST00000589351 STAG3Q9UJ98 1225 aa12.83□□□□□ -0.36
DNMT1-220ENST00000589351 GALR2O43603 387 aaPredicted RBP12.78□□□□□ -0.36
DNMT1-220ENST00000589351 SPDYE4A6NLX3 237 aa12.76□□□□□ -0.37
DNMT1-220ENST00000589351 PHF12Q96QT6 1004 aa12.7□□□□□ -0.38
DNMT1-220ENST00000589351 PAK3O75914 559 aaPredicted RBP12.66□□□□□ -0.38
DNMT1-220ENST00000589351 POTEB2H3BUK9 544 aa12.65□□□□□ -0.38
DNMT1-220ENST00000589351 EHMT2Q96KQ7 1210 aa12.65□□□□□ -0.38
DNMT1-220ENST00000589351 MNX1P50219 401 aaPredicted RBP12.64□□□□□ -0.39
DNMT1-220ENST00000589351 OTUD5Q96G74 571 aa12.64□□□□□ -0.39
DNMT1-220ENST00000589351 NPM1P06748 294 aaKnown RBP eCLIP12.61□□□□□ -0.39
DNMT1-220ENST00000589351 PLSCR2Q9NRY7 297 aa12.61□□□□□ -0.39
DNMT1-220ENST00000589351 PELP1Q8IZL8 1130 aaKnown RBP12.59□□□□□ -0.39
DNMT1-220ENST00000589351 ABCC9O60706 1549 aa12.52□□□□□ -0.4
DNMT1-220ENST00000589351 MS4A3Q96HJ5 214 aa12.51□□□□□ -0.41
DNMT1-220ENST00000589351 ASTLQ6HA08 431 aaPredicted RBP12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms