RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Eif4a2P10630 407 aa19.93■□□□□ 0.78
Trim28-201ENSMUST00000005705 Hmox1P14901 289 aa19.93■□□□□ 0.78
Trim28-201ENSMUST00000005705 TmpoQ61033 693 aaKnown RBP19.93■□□□□ 0.78
Trim28-201ENSMUST00000005705 Rsph6aQ8CDR2 708 aa19.93■□□□□ 0.78
Trim28-201ENSMUST00000005705 Rasa1E9PYG6 1038 aa19.93■□□□□ 0.78
Trim28-201ENSMUST00000005705 Ccdc171E9Q1U1 1324 aa19.92■□□□□ 0.78
Trim28-201ENSMUST00000005705 Map3k13Q1HKZ5 959 aa19.92■□□□□ 0.78
Trim28-201ENSMUST00000005705 Gdpd2Q9ESM6 539 aa19.92■□□□□ 0.78
Trim28-201ENSMUST00000005705 PaskQ8CEE6 1383 aa19.92■□□□□ 0.78
Trim28-201ENSMUST00000005705 Zbtb45Q52KG4 520 aa19.92■□□□□ 0.78
Trim28-201ENSMUST00000005705 Rtf1A2AQ19 715 aaKnown RBP19.91■□□□□ 0.78
Trim28-201ENSMUST00000005705 Tmem132eQ6IEE6 982 aa19.91■□□□□ 0.78
Trim28-201ENSMUST00000005705 Idi2Q8BFZ6 227 aa19.91■□□□□ 0.78
Trim28-201ENSMUST00000005705 Jarid2Q62315 1234 aa19.91■□□□□ 0.78
Trim28-201ENSMUST00000005705 Plekhg1F6S200 1446 aa19.9■□□□□ 0.78
Trim28-201ENSMUST00000005705 Vgll3P85442 326 aa19.9■□□□□ 0.78
Trim28-201ENSMUST00000005705 Fam13aQ8BGI4 693 aa19.9■□□□□ 0.78
Trim28-201ENSMUST00000005705 Dhx16G3X8X0 1044 aaKnown RBP19.9■□□□□ 0.78
Trim28-201ENSMUST00000005705 Stk3Q9JI10 497 aa19.9■□□□□ 0.78
Trim28-201ENSMUST00000005705 Hs1bp3Q3TC93 395 aa19.89■□□□□ 0.78
Trim28-201ENSMUST00000005705 Ppip5k2Q6ZQB6 1129 aa19.89■□□□□ 0.77
Trim28-201ENSMUST00000005705 Ccne1Q61457 408 aa19.89■□□□□ 0.77
Trim28-201ENSMUST00000005705 Pik3r4Q8VD65 1358 aa19.88■□□□□ 0.77
Trim28-201ENSMUST00000005705 Ddrgk1Q80WW9 315 aa19.88■□□□□ 0.77
Trim28-201ENSMUST00000005705 Ncbp3Q8BZR9 615 aaKnown RBP19.88■□□□□ 0.77
Trim28-201ENSMUST00000005705 MyclP10166 368 aa19.88■□□□□ 0.77
Trim28-201ENSMUST00000005705 F2rP30558 430 aa19.88■□□□□ 0.77
Trim28-201ENSMUST00000005705 Rbm27Q5SFM8 1060 aaKnown RBP19.88■□□□□ 0.77
Trim28-201ENSMUST00000005705 Sv2bQ8BG39 683 aa19.87■□□□□ 0.77
Trim28-201ENSMUST00000005705 Tmx3Q8BXZ1 456 aa19.87■□□□□ 0.77
Trim28-201ENSMUST00000005705 Slc4a10Q5DTL9 1118 aa19.87■□□□□ 0.77
Trim28-201ENSMUST00000005705 Cetn4Q8K4K1 168 aa19.87■□□□□ 0.77
Trim28-201ENSMUST00000005705 Gadd45bP22339 160 aa19.86■□□□□ 0.77
Trim28-201ENSMUST00000005705 Uhrf1bp1B2KF50 1429 aa19.86■□□□□ 0.77
Trim28-201ENSMUST00000005705 BccipQ9CWI3 316 aa19.85■□□□□ 0.77
Trim28-201ENSMUST00000005705 Cwc27Q3TKY6 469 aa19.85■□□□□ 0.77
Trim28-201ENSMUST00000005705 CatipB9EKE5 520 aa19.85■□□□□ 0.77
Trim28-201ENSMUST00000005705 Srgap3Q812A2 1099 aa19.85■□□□□ 0.77
Trim28-201ENSMUST00000005705 Pank2Q3U4S0 443 aa19.84■□□□□ 0.77
Trim28-201ENSMUST00000005705 Pdia3P27773 505 aaKnown RBP19.83■□□□□ 0.77
Trim28-201ENSMUST00000005705 Erbb4Q61527 1308 aa19.83■□□□□ 0.77
Trim28-201ENSMUST00000005705 VgfQ0VGU4 617 aa19.83■□□□□ 0.77
Trim28-201ENSMUST00000005705 Nwd1A6H603 1563 aa19.83■□□□□ 0.76
Trim28-201ENSMUST00000005705 Cyp46a1Q9WVK8 500 aa19.83■□□□□ 0.76
Trim28-201ENSMUST00000005705 Syce3B5KM66 88 aa19.82■□□□□ 0.76
Trim28-201ENSMUST00000005705 LifrP42703 1092 aa19.82■□□□□ 0.76
Trim28-201ENSMUST00000005705 Q3UJC8 639 aa19.82■□□□□ 0.76
Trim28-201ENSMUST00000005705 Ubap1lG3UW59 384 aa19.81■□□□□ 0.76
Trim28-201ENSMUST00000005705 Atg4a-psA0A0G2JFS9 396 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 1700010I14RikQ7TPG0 532 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Atg4aQ8C9S8 396 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Rab11fip3Q8CHD8 1047 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 TimelessQ9R1X4 1197 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Wwc1Q5SXA9 1104 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Naa30Q8CES0 364 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Fkbp4P30416 458 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Irf5P56477 497 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Pcmtd1P59913 357 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Jakmip1Q8BVL9 626 aa19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 HnrnpuQ8VEK3 800 aaKnown RBP19.8■□□□□ 0.76
Trim28-201ENSMUST00000005705 Zkscan1Q8BGS3 561 aaKnown RBP19.79■□□□□ 0.76
Trim28-201ENSMUST00000005705 Gm9992B2RWK3 458 aa19.79■□□□□ 0.76
Trim28-201ENSMUST00000005705 Isy1Q69ZQ2 285 aaKnown RBP19.79■□□□□ 0.76
Trim28-201ENSMUST00000005705 Unc93aQ710D3 458 aa19.79■□□□□ 0.76
Trim28-201ENSMUST00000005705 Kdm4cQ8VCD7 1054 aa19.79■□□□□ 0.76
Trim28-201ENSMUST00000005705 Atp7bQ64446 1462 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Ppp1r42Q8R1Z4 357 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Ppp6r3Q922D4 844 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Brpf1B2RRD7 1212 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Bach1P97302 739 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Zc3h13E9Q784 1729 aaKnown RBP19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Lmod3E9QA62 571 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Ppfia3P60469 1194 aa19.78■□□□□ 0.76
Trim28-201ENSMUST00000005705 Kif24Q6NWW5 1356 aa19.77■□□□□ 0.76
Trim28-201ENSMUST00000005705 Exoc6bA6H5Z3 810 aa19.77■□□□□ 0.76
Trim28-201ENSMUST00000005705 Chd4Q6PDQ2 1915 aaKnown RBP19.77■□□□□ 0.76
Trim28-201ENSMUST00000005705 PplQ9R269 1755 aa19.77■□□□□ 0.76
Trim28-201ENSMUST00000005705 4931400O07RikQ9D4M5 137 aa19.77■□□□□ 0.75
Trim28-201ENSMUST00000005705 Dip2aQ8BWT5 1523 aa19.77■□□□□ 0.75
Trim28-201ENSMUST00000005705 EngaseQ8BX80 734 aa19.76■□□□□ 0.75
Trim28-201ENSMUST00000005705 Ripk4Q9ERK0 786 aa19.76■□□□□ 0.75
Trim28-201ENSMUST00000005705 Ush1cQ9ES64 910 aa19.76■□□□□ 0.75
Trim28-201ENSMUST00000005705 Zbtb22Q9Z0G7 638 aa19.75■□□□□ 0.75
Trim28-201ENSMUST00000005705 PtpruB1AUH1 1446 aa19.75■□□□□ 0.75
Trim28-201ENSMUST00000005705 Eya1P97767 591 aa19.75■□□□□ 0.75
Trim28-201ENSMUST00000005705 EappQ5BU09 281 aa19.75■□□□□ 0.75
Trim28-201ENSMUST00000005705 RictorQ6QI06 1708 aa19.74■□□□□ 0.75
Trim28-201ENSMUST00000005705 Chpf2Q3UU43 768 aa19.74■□□□□ 0.75
Trim28-201ENSMUST00000005705 Chmp4bQ9D8B3 224 aaKnown RBP19.74■□□□□ 0.75
Trim28-201ENSMUST00000005705 Clcn1Q64347 994 aa19.74■□□□□ 0.75
Trim28-201ENSMUST00000005705 CenppQ9CZ92 286 aa19.74■□□□□ 0.75
Trim28-201ENSMUST00000005705 Slc35g1Q8BY79 368 aa19.73■□□□□ 0.75
Trim28-201ENSMUST00000005705 Idi1P58044 227 aa19.73■□□□□ 0.75
Trim28-201ENSMUST00000005705 Tceanc2Q8R2M0 207 aa19.73■□□□□ 0.75
Trim28-201ENSMUST00000005705 Tpm2P58774 284 aa19.72■□□□□ 0.75
Trim28-201ENSMUST00000005705 Nucb1Q02819 459 aaKnown RBP19.72■□□□□ 0.75
Trim28-201ENSMUST00000005705 Scaf1Q5U4C3 1256 aaKnown RBP19.72■□□□□ 0.75
Trim28-201ENSMUST00000005705 Cgnl1Q6AW69 1298 aa19.72■□□□□ 0.75
Trim28-201ENSMUST00000005705 Dennd6aQ8BH65 605 aa19.72■□□□□ 0.75
Trim28-201ENSMUST00000005705 Amotl2Q8K371 772 aa19.72■□□□□ 0.75
Retrieved 100 of 22,080 RNA–protein pairs in 46.2 ms