RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	RMP1	Q12530	201 aa		13.6	□□□□□ -0.23
BDF1	YLR399C	MTF2	P10849	440 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	DPH5	P32469	300 aa	Predicted RBP	13.59	□□□□□ -0.23
BDF1	YLR399C	CNS1	P33313	385 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	HMI1	Q12039	706 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	ARG1	P22768	420 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	YKR018C	P36114	725 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	EFM2	P38347	419 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	MRX1	P40050	688 aa		13.59	□□□□□ -0.23
BDF1	YLR399C	EIS1	Q05050	843 aa	Known RBP	13.59	□□□□□ -0.23
BDF1	YLR399C	NOP6	Q07623	225 aa	Known RBP	13.59	□□□□□ -0.23
BDF1	YLR399C	RRP6	Q12149	733 aa	Known RBP	13.59	□□□□□ -0.23
BDF1	YLR399C	PUP2	P32379	260 aa		13.58	□□□□□ -0.24
BDF1	YLR399C	TPS3	P38426	1054 aa	Known RBP	13.58	□□□□□ -0.24
BDF1	YLR399C	FYV8	P46949	817 aa	Known RBP	13.58	□□□□□ -0.24
BDF1	YLR399C	OLA1	P38219	394 aa	Known RBP	13.57	□□□□□ -0.24
BDF1	YLR399C	DCS2	Q12123	353 aa		13.57	□□□□□ -0.24
BDF1	YLR399C	RPL22A	P05749	121 aa	Known RBP	13.57	□□□□□ -0.24
BDF1	YLR399C	URA1	P28272	314 aa	Predicted RBP	13.57	□□□□□ -0.24
BDF1	YLR399C	CDC8	P00572	216 aa		13.56	□□□□□ -0.24
BDF1	YLR399C	CDC37	P06101	506 aa	Known RBP	13.56	□□□□□ -0.24
BDF1	YLR399C	SHQ1	P40486	507 aa	Predicted RBP	13.56	□□□□□ -0.24
BDF1	YLR399C	YLR001C	Q07895	862 aa		13.56	□□□□□ -0.24
BDF1	YLR399C	GAL11	P19659	1081 aa		13.55	□□□□□ -0.24
BDF1	YLR399C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	13.55	□□□□□ -0.24	not detected
BDF1	YLR399C	FKS3	Q04952	1785 aa		13.55	□□□□□ -0.24
BDF1	YLR399C	MRPS28	P21771	286 aa		13.55	□□□□□ -0.24
BDF1	YLR399C	TY4A-H	Q6Q5P6	413 aa		13.55	□□□□□ -0.24
BDF1	YLR399C	SPO12	P17123	173 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	OPI1	P21957	404 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	RAD57	P25301	460 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	RCR1	P38212	213 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	CTM1	P38818	585 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	CUE3	P53137	624 aa	Known RBP	13.54	□□□□□ -0.24
BDF1	YLR399C	NGL3	Q03210	505 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	13.54	□□□□□ -0.24	not detected
BDF1	YLR399C	ILM1	P47155	203 aa		13.54	□□□□□ -0.24
BDF1	YLR399C	BNI1	P41832	1953 aa		13.53	□□□□□ -0.24
BDF1	YLR399C	OSH3	P38713	996 aa	Known RBP	13.53	□□□□□ -0.24
BDF1	YLR399C	RPN10	P38886	268 aa	Known RBP	13.53	□□□□□ -0.24
BDF1	YLR399C	YMR147W	P40218	223 aa	Known RBP	13.53	□□□□□ -0.24
BDF1	YLR399C	ALD3	P54114	506 aa		13.53	□□□□□ -0.24
BDF1	YLR399C	YLR287C	Q05881	355 aa		13.53	□□□□□ -0.24
BDF1	YLR399C	MAK11	P20484	414 aa	Known RBP	13.52	□□□□□ -0.24
BDF1	YLR399C	SRB4	P32569	687 aa		13.52	□□□□□ -0.24
BDF1	YLR399C	YGR237C	P50089	785 aa		13.52	□□□□□ -0.24
BDF1	YLR399C	PXR1	P53335	271 aa	Predicted RBP	13.52	□□□□□ -0.24
BDF1	YLR399C	INP54	Q08227	384 aa	Known RBP	13.52	□□□□□ -0.24
BDF1	YLR399C	GYP5	Q12344	894 aa		13.52	□□□□□ -0.24
BDF1	YLR399C	HOS4	P40480	1083 aa		13.52	□□□□□ -0.25
BDF1	YLR399C	SEC5	P89102	971 aa		13.52	□□□□□ -0.25
BDF1	YLR399C	LAM4	P38800	1345 aa		13.52	□□□□□ -0.25
BDF1	YLR399C	SET1	P38827	1080 aa	Known RBP	13.51	□□□□□ -0.25
BDF1	YLR399C	MEC3	Q02574	474 aa		13.51	□□□□□ -0.25
BDF1	YLR399C	PKH3	Q03306	898 aa	Predicted RBP	13.51	□□□□□ -0.25
BDF1	YLR399C	UTP5	Q04177	643 aa	Known RBP	13.51	□□□□□ -0.25
BDF1	YLR399C	CDC6	P09119	513 aa		13.51	□□□□□ -0.25
BDF1	YLR399C	CBP3	P21560	335 aa		13.51	□□□□□ -0.25
BDF1	YLR399C	HUL5	P53119	910 aa		13.51	□□□□□ -0.25
BDF1	YLR399C	NCS2	P53923	493 aa	Predicted RBP	13.51	□□□□□ -0.25
BDF1	YLR399C	LSC2	P53312	427 aa		13.5	□□□□□ -0.25
BDF1	YLR399C	ADA2	Q02336	434 aa		13.5	□□□□□ -0.25
BDF1	YLR399C	UME1	Q03010	460 aa		13.5	□□□□□ -0.25
BDF1	YLR399C	PLP2	Q12017	286 aa		13.5	□□□□□ -0.25
BDF1	YLR399C	VPS1	P21576	704 aa	Known RBP	13.49	□□□□□ -0.25
BDF1	YLR399C	SEC8	P32855	1065 aa		13.49	□□□□□ -0.25
BDF1	YLR399C	APL2	P36000	726 aa	Predicted RBP	13.49	□□□□□ -0.25
BDF1	YLR399C	EBS1	Q03466	884 aa	Known RBP	13.49	□□□□□ -0.25
BDF1	YLR399C	SPO11	P23179	398 aa		13.49	□□□□□ -0.25
BDF1	YLR399C	UBX2	Q04228	584 aa		13.49	□□□□□ -0.25
BDF1	YLR399C	DPL1	Q05567	589 aa		13.49	□□□□□ -0.25
BDF1	YLR399C	AKR1	P39010	764 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	PXA1	P41909	870 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	YNL193W	P53870	558 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	SLP1	Q12232	587 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	SEC18	P18759	758 aa	Known RBP	13.48	□□□□□ -0.25
BDF1	YLR399C	LOS1	P33418	1100 aa	Predicted RBP	13.48	□□□□□ -0.25
BDF1	YLR399C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	13.48	□□□□□ -0.25	not detected
BDF1	YLR399C	MIP6	P38760	659 aa	Known RBP	13.48	□□□□□ -0.25
BDF1	YLR399C	YMR124W	P39523	943 aa	Known RBP	13.48	□□□□□ -0.25
BDF1	YLR399C	CUS1	Q02554	436 aa	Predicted RBP	13.48	□□□□□ -0.25
BDF1	YLR399C	SOV1	Q04748	898 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	YLR177W	Q06251	628 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	CSC1	Q06538	782 aa		13.48	□□□□□ -0.25
BDF1	YLR399C	ARG4	P04076	463 aa	Predicted RBP	13.47	□□□□□ -0.25
BDF1	YLR399C	TOM70	P07213	617 aa	Known RBP	13.47	□□□□□ -0.25
BDF1	YLR399C	TIF4632	P39936	914 aa	Known RBP	13.47	□□□□□ -0.25
BDF1	YLR399C	FCP1	Q03254	732 aa		13.47	□□□□□ -0.25
BDF1	YLR399C	EST2	Q06163	884 aa		13.47	□□□□□ -0.25
BDF1	YLR399C	SLM3	Q12093	417 aa		13.47	□□□□□ -0.25
BDF1	YLR399C	MPH3	P0CE00	602 aa		13.46	□□□□□ -0.25
BDF1	YLR399C	CKI1	P20485	582 aa		13.46	□□□□□ -0.25
BDF1	YLR399C	RAD5	P32849	1169 aa	Predicted RBP	13.46	□□□□□ -0.25
BDF1	YLR399C	RPG1	P38249	964 aa	Known RBP	13.46	□□□□□ -0.25
BDF1	YLR399C	SIP3	P38717	1229 aa		13.46	□□□□□ -0.25
BDF1	YLR399C	HFM1	P51979	1187 aa		13.46	□□□□□ -0.25
BDF1	YLR399C	ZPR1	P53303	486 aa	Known RBP	13.46	□□□□□ -0.25
BDF1	YLR399C	GET3	Q12154	354 aa	Known RBP	13.46	□□□□□ -0.25
BDF1	YLR399C	PIF1	P07271	859 aa		13.46	□□□□□ -0.26
BDF1	YLR399C	LAS1	P36146	502 aa	Predicted RBP	13.46	□□□□□ -0.26

Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms