RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 SEC24BO95487 1268 aa13.92□□□□□ -0.18
DDX56-203ENST00000421223 MBIPQ9NS73 344 aa13.92□□□□□ -0.18
DDX56-203ENST00000421223 MIS18AQ9NYP9 233 aa13.91□□□□□ -0.18
DDX56-203ENST00000421223 AMPHP49418 695 aa13.91□□□□□ -0.18
DDX56-203ENST00000421223 KRT24Q2M2I5 525 aa13.91□□□□□ -0.18
DDX56-203ENST00000421223 DDX19BQ9UMR2 479 aa13.91□□□□□ -0.18
DDX56-203ENST00000421223 ADAMTS13Q76LX8 1427 aa13.91□□□□□ -0.18
DDX56-203ENST00000421223 NLRP6P59044 892 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 GNAI1P63096 354 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 DDRGK1Q96HY6 314 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 DNAJC5Q9H3Z4 198 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 DLC1Q96QB1 1528 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 CT47B1P0C2W7 299 aaPredicted RBP13.9□□□□□ -0.18
DDX56-203ENST00000421223 KCNA6P17658 529 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 C8orf58Q8NAV2 365 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 MED14O60244 1454 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 IL16Q14005 1332 aa13.9□□□□□ -0.18
DDX56-203ENST00000421223 TWISTNBQ3B726 338 aaPredicted RBP13.9□□□□□ -0.18
DDX56-203ENST00000421223 SIRT1Q96EB6 747 aa13.89□□□□□ -0.19
DDX56-203ENST00000421223 FAM135BQ49AJ0 1406 aa13.89□□□□□ -0.19
DDX56-203ENST00000421223 CALD1Q05682 793 aaKnown RBP13.89□□□□□ -0.19
DDX56-203ENST00000421223 NRXN3Q9Y4C0 1643 aa13.89□□□□□ -0.19
DDX56-203ENST00000421223 LRRC7Q96NW7 1537 aa13.88□□□□□ -0.19
DDX56-203ENST00000421223 MAP2P11137 1827 aaKnown RBP13.88□□□□□ -0.19
DDX56-203ENST00000421223 VAMP4O75379 141 aa13.88□□□□□ -0.19
DDX56-203ENST00000421223 KIF16BQ96L93 1317 aa13.88□□□□□ -0.19
DDX56-203ENST00000421223 FOXO3O43524 673 aa13.88□□□□□ -0.19
DDX56-203ENST00000421223 PLEKHG1Q9ULL1 1385 aa13.87□□□□□ -0.19
DDX56-203ENST00000421223 PTPRUQ92729 1446 aa13.87□□□□□ -0.19
DDX56-203ENST00000421223 NCBP3Q53F19 620 aaKnown RBP13.87□□□□□ -0.19
DDX56-203ENST00000421223 LMOD3Q0VAK6 560 aa13.86□□□□□ -0.19
DDX56-203ENST00000421223 LMOD2Q6P5Q4 547 aa13.86□□□□□ -0.19
DDX56-203ENST00000421223 LNPKQ9C0E8 428 aa13.86□□□□□ -0.19
DDX56-203ENST00000421223 TBX22Q9Y458 520 aa13.86□□□□□ -0.19
DDX56-203ENST00000421223 PLEKHG3A1L390 1219 aa13.86□□□□□ -0.19
DDX56-203ENST00000421223 MAP3K19Q56UN5 1328 aa13.85□□□□□ -0.19
DDX56-203ENST00000421223 ABTB2Q8N961 1025 aa13.85□□□□□ -0.19
DDX56-203ENST00000421223 IFT57Q9NWB7 429 aa13.85□□□□□ -0.19
DDX56-203ENST00000421223 CFAP44Q96MT7 982 aa13.85□□□□□ -0.19
DDX56-203ENST00000421223 ADGRB2O60241 1585 aa13.85□□□□□ -0.19
DDX56-203ENST00000421223 KIF20BQ96Q89 1820 aa13.85□□□□□ -0.19
DDX56-203ENST00000421223 DEKP35659 375 aaKnown RBP13.84□□□□□ -0.19
DDX56-203ENST00000421223 ALDH1L2Q3SY69 923 aa13.84□□□□□ -0.19
DDX56-203ENST00000421223 MRPL50Q8N5N7 158 aaKnown RBP13.84□□□□□ -0.19
DDX56-203ENST00000421223 RTF1Q92541 710 aaKnown RBP13.84□□□□□ -0.19
DDX56-203ENST00000421223 NECTIN2Q92692 538 aa13.84□□□□□ -0.19
DDX56-203ENST00000421223 UPF2Q9HAU5 1272 aaKnown RBP13.84□□□□□ -0.19
DDX56-203ENST00000421223 XPCQ01831 940 aaPredicted RBP13.83□□□□□ -0.19
DDX56-203ENST00000421223 AAMPQ13685 434 aa13.83□□□□□ -0.19
DDX56-203ENST00000421223 ZBTB40Q9NUA8 1239 aa13.83□□□□□ -0.19
DDX56-203ENST00000421223 SETD1AO15047 1707 aaKnown RBP13.83□□□□□ -0.2
DDX56-203ENST00000421223 AATKQ6ZMQ8 1374 aa13.83□□□□□ -0.2
DDX56-203ENST00000421223 APBB1O00213 710 aa13.83□□□□□ -0.2
DDX56-203ENST00000421223 TECPR2O15040 1411 aa13.83□□□□□ -0.2
DDX56-203ENST00000421223 ANKRD45Q5TZF3 282 aa13.83□□□□□ -0.2
DDX56-203ENST00000421223 SPRYD3Q8NCJ5 442 aa13.83□□□□□ -0.2
DDX56-203ENST00000421223 MFAP1P55081 439 aaKnown RBP13.82□□□□□ -0.2
DDX56-203ENST00000421223 USHBP1Q8N6Y0 703 aa13.82□□□□□ -0.2
DDX56-203ENST00000421223 UBE2Q2Q8WVN8 375 aa13.82□□□□□ -0.2
DDX56-203ENST00000421223 UBR1Q8IWV7 1749 aa13.82□□□□□ -0.2
DDX56-203ENST00000421223 CDC42BPGQ6DT37 1551 aa13.82□□□□□ -0.2
DDX56-203ENST00000421223 USP6P35125 1406 aa13.82□□□□□ -0.2
DDX56-203ENST00000421223 CDK12Q9NYV4 1490 aaPredicted RBP13.81□□□□□ -0.2
DDX56-203ENST00000421223 ESCO1Q5FWF5 840 aa13.81□□□□□ -0.2
DDX56-203ENST00000421223 ANKRD26Q9UPS8 1709 aa13.81□□□□□ -0.2
DDX56-203ENST00000421223 MTHFSDQ2M296 383 aaKnown RBP13.8□□□□□ -0.2
DDX56-203ENST00000421223 SLKQ9H2G2 1235 aaPredicted RBP13.8□□□□□ -0.2
DDX56-203ENST00000421223 SLC4A10Q6U841 1118 aa13.8□□□□□ -0.2
DDX56-203ENST00000421223 ANKLE2Q86XL3 938 aa13.8□□□□□ -0.2
DDX56-203ENST00000421223 EYA1Q99502 592 aa13.8□□□□□ -0.2
DDX56-203ENST00000421223 ZNF853P0CG23 659 aa13.8□□□□□ -0.2
DDX56-203ENST00000421223 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.79□□□□□ -0.2
DDX56-203ENST00000421223 TSPYL4Q9UJ04 414 aa13.79□□□□□ -0.2
DDX56-203ENST00000421223 ZBTB7BO15156 539 aaPredicted RBP13.78□□□□□ -0.2
DDX56-203ENST00000421223 PSME1Q06323 249 aa13.78□□□□□ -0.2
DDX56-203ENST00000421223 HDAC1Q13547 482 aaPredicted RBP13.78□□□□□ -0.2
DDX56-203ENST00000421223 SLC4A2P04920 1241 aa13.77□□□□□ -0.2
DDX56-203ENST00000421223 ZNF428Q96B54 188 aa13.77□□□□□ -0.21
DDX56-203ENST00000421223 API5Q9BZZ5 524 aaKnown RBP13.77□□□□□ -0.21
DDX56-203ENST00000421223 PHF8Q9UPP1 1060 aa13.76□□□□□ -0.21
DDX56-203ENST00000421223 USP19O94966 1318 aa13.76□□□□□ -0.21
DDX56-203ENST00000421223 TTC21AQ8NDW8 1320 aa13.76□□□□□ -0.21
DDX56-203ENST00000421223 F6X3S4 739 aa13.75□□□□□ -0.21
DDX56-203ENST00000421223 CHD1LQ86WJ1 897 aa13.75□□□□□ -0.21
DDX56-203ENST00000421223 SMC5Q8IY18 1101 aa13.75□□□□□ -0.21
DDX56-203ENST00000421223 CHL1O00533 1208 aa13.74□□□□□ -0.21
DDX56-203ENST00000421223 OVOS2A0A0J9YW53 1432 aa13.74□□□□□ -0.21
DDX56-203ENST00000421223 OVOS2Q6IE36 1432 aa13.74□□□□□ -0.21
DDX56-203ENST00000421223 FLT4P35916 1363 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 HOXC9P31274 260 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 BECN1Q14457 450 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 NFKBIBQ15653 356 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 ITSN1Q15811 1721 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 C3P01024 1663 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 G2E3Q7L622 706 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 ARHGAP45Q92619 1136 aa13.73□□□□□ -0.21
DDX56-203ENST00000421223 NUCB1Q02818 461 aa13.72□□□□□ -0.21
DDX56-203ENST00000421223 SIRT2Q8IXJ6 389 aa13.72□□□□□ -0.21
DDX56-203ENST00000421223 KLHL34Q8N239 644 aa13.72□□□□□ -0.21
DDX56-203ENST00000421223 ORAI2Q96SN7 254 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms