RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 NISCHQ9Y2I1 1504 aa22.95■■□□□ 1.26
DDX56-203ENST00000421223 SHROOM4Q9ULL8 1493 aa19.83■□□□□ 0.76
DDX56-203ENST00000421223 DCAF8L2P0C7V8 631 aa19.74■□□□□ 0.75
DDX56-203ENST00000421223 CCDC180Q9P1Z9 1646 aa19.42■□□□□ 0.7
DDX56-203ENST00000421223 SUPT5HO00267 1087 aaKnown RBP19.38■□□□□ 0.69
DDX56-203ENST00000421223 ZCCHC6Q5VYS8 1495 aaKnown RBP19.3■□□□□ 0.68
DDX56-203ENST00000421223 ABCC9O60706 1549 aa18.67■□□□□ 0.58
DDX56-203ENST00000421223 DCAF1Q9Y4B6 1507 aa18.64■□□□□ 0.57
DDX56-203ENST00000421223 CHIC1Q5VXU3 224 aa18.49■□□□□ 0.55
DDX56-203ENST00000421223 SCRIBQ14160 1630 aa18.48■□□□□ 0.55
DDX56-203ENST00000421223 MYO15BQ96JP2 1530 aa18.24■□□□□ 0.51
DDX56-203ENST00000421223 NACADO15069 1562 aa18.15■□□□□ 0.5
DDX56-203ENST00000421223 RSF1Q96T23 1441 aaPredicted RBP18.14■□□□□ 0.49
DDX56-203ENST00000421223 LOC105371045A0A1W2PR82 267 aa18.09■□□□□ 0.49
DDX56-203ENST00000421223 CECR2Q9BXF3 1484 aa18.06■□□□□ 0.48
DDX56-203ENST00000421223 EHMT2Q96KQ7 1210 aa17.99■□□□□ 0.47
DDX56-203ENST00000421223 FAM9AQ8IZU1 332 aaPredicted RBP17.98■□□□□ 0.47
DDX56-203ENST00000421223 TRIM41Q8WV44 630 aa17.96■□□□□ 0.47
DDX56-203ENST00000421223 RB1CC1Q8TDY2 1594 aa17.96■□□□□ 0.47
DDX56-203ENST00000421223 PABPN1Q86U42 306 aaKnown RBP eCLIP17.96■□□□□ 0.465e-7■■■■□ 20.7
DDX56-203ENST00000421223 MROH2BQ7Z745 1585 aa17.9■□□□□ 0.46
DDX56-203ENST00000421223 PCGF6Q9BYE7 350 aa17.83■□□□□ 0.45
DDX56-203ENST00000421223 WIZO95785 1651 aa17.77■□□□□ 0.43
DDX56-203ENST00000421223 BAZ1AQ9NRL2 1556 aaPredicted RBP17.64■□□□□ 0.41
DDX56-203ENST00000421223 UNC13AQ9UPW8 1703 aa17.56■□□□□ 0.4
DDX56-203ENST00000421223 SMARCA4P51532 1647 aa17.5■□□□□ 0.39
DDX56-203ENST00000421223 PPARGC1BQ86YN6 1023 aaKnown RBP17.45■□□□□ 0.38
DDX56-203ENST00000421223 CCDC88BA6NC98 1476 aa17.45■□□□□ 0.38
DDX56-203ENST00000421223 HRCP23327 699 aa17.45■□□□□ 0.38
DDX56-203ENST00000421223 BICRAQ9NZM4 1560 aa17.43■□□□□ 0.38
DDX56-203ENST00000421223 TOP2AP11388 1531 aaKnown RBP17.4■□□□□ 0.38
DDX56-203ENST00000421223 TRIM26Q12899 539 aaPredicted RBP17.39■□□□□ 0.37
DDX56-203ENST00000421223 ABCC8Q09428 1581 aa17.37■□□□□ 0.37
DDX56-203ENST00000421223 SMARCA2P51531 1590 aa17.32■□□□□ 0.36
DDX56-203ENST00000421223 TTBK1Q5TCY1 1321 aaPredicted RBP17.3■□□□□ 0.36
DDX56-203ENST00000421223 UBTFP17480 764 aaKnown RBP17.23■□□□□ 0.35
DDX56-203ENST00000421223 SOGA1O94964 1423 aa17.2■□□□□ 0.34
DDX56-203ENST00000421223 ATAD2BQ9ULI0 1458 aa17.2■□□□□ 0.34
DDX56-203ENST00000421223 BAZ1BQ9UIG0 1483 aaKnown RBP17.19■□□□□ 0.34
DDX56-203ENST00000421223 EIF4G1Q04637 1599 aaKnown RBP17.18■□□□□ 0.34
DDX56-203ENST00000421223 RANGAP1P46060 587 aaPredicted RBP17.15■□□□□ 0.34
DDX56-203ENST00000421223 CSRNP3Q8WYN3 585 aa17.15■□□□□ 0.34
DDX56-203ENST00000421223 RUSC2Q8N2Y8 1516 aa17.12■□□□□ 0.33
DDX56-203ENST00000421223 WRNQ14191 1432 aaPredicted RBP eCLIP17.1■□□□□ 0.33
DDX56-203ENST00000421223 PEG3Q9GZU2 1588 aa17.03■□□□□ 0.32
DDX56-203ENST00000421223 CEP162Q5TB80 1403 aa16.96■□□□□ 0.31
DDX56-203ENST00000421223 SYNJ1O43426 1573 aa16.93■□□□□ 0.3
DDX56-203ENST00000421223 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.91■□□□□ 0.3
DDX56-203ENST00000421223 TNIKQ9UKE5 1360 aa16.9■□□□□ 0.3
DDX56-203ENST00000421223 EEA1Q15075 1411 aa16.89■□□□□ 0.29
DDX56-203ENST00000421223 NCAPD3P42695 1498 aa16.85■□□□□ 0.29
DDX56-203ENST00000421223 GOLGA3Q08378 1498 aa16.85■□□□□ 0.29
DDX56-203ENST00000421223 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
DDX56-203ENST00000421223 ZEB1P37275 1124 aaPredicted RBP16.83■□□□□ 0.28
DDX56-203ENST00000421223 APLP2Q06481 763 aa16.78■□□□□ 0.28
DDX56-203ENST00000421223 CEP164Q9UPV0 1460 aa16.77■□□□□ 0.28
DDX56-203ENST00000421223 RAPGEF2Q9Y4G8 1499 aa16.75■□□□□ 0.27
DDX56-203ENST00000421223 CLIP1P30622 1438 aa16.74■□□□□ 0.27
DDX56-203ENST00000421223 HMGXB3Q12766 1538 aa16.74■□□□□ 0.27
DDX56-203ENST00000421223 HNRNPUL2Q1KMD3 747 aaKnown RBP16.72■□□□□ 0.27
DDX56-203ENST00000421223 TOP2BQ02880 1626 aa16.67■□□□□ 0.26
DDX56-203ENST00000421223 CFTRP13569 1480 aa16.66■□□□□ 0.26
DDX56-203ENST00000421223 CUX1P39880 1505 aa16.65■□□□□ 0.26
DDX56-203ENST00000421223 CADPSQ9ULU8 1353 aa16.63■□□□□ 0.25
DDX56-203ENST00000421223 CC2D2AQ9P2K1 1620 aa16.62■□□□□ 0.25
DDX56-203ENST00000421223 KIF27Q86VH2 1401 aa16.6■□□□□ 0.25
DDX56-203ENST00000421223 KIF21BO75037 1637 aa16.59■□□□□ 0.25
DDX56-203ENST00000421223 DNAJC5BQ9UF47 199 aa16.56■□□□□ 0.24
DDX56-203ENST00000421223 CUX2O14529 1486 aa16.55■□□□□ 0.24
DDX56-203ENST00000421223 VPS8Q8N3P4 1428 aa16.54■□□□□ 0.24
DDX56-203ENST00000421223 BIVM-ERCC5R4GMW8 1640 aa16.54■□□□□ 0.24
DDX56-203ENST00000421223 ATP1B4Q9UN42 357 aaPredicted RBP16.53■□□□□ 0.24
DDX56-203ENST00000421223 P3H3Q8IVL6 736 aa16.52■□□□□ 0.24
DDX56-203ENST00000421223 NESP48681 1621 aa16.5■□□□□ 0.23
DDX56-203ENST00000421223 PRXQ9BXM0 1461 aa16.5■□□□□ 0.23
DDX56-203ENST00000421223 KANK4Q5T7N3 995 aaPredicted RBP16.48■□□□□ 0.23
DDX56-203ENST00000421223 ITGAEP38570 1179 aa16.47■□□□□ 0.23
DDX56-203ENST00000421223 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
DDX56-203ENST00000421223 FGD5Q6ZNL6 1462 aa16.46■□□□□ 0.23
DDX56-203ENST00000421223 IGF1RP08069 1367 aa16.45■□□□□ 0.22
DDX56-203ENST00000421223 CARMIL1Q5VZK9 1371 aa16.43■□□□□ 0.22
DDX56-203ENST00000421223 RAD54L2Q9Y4B4 1467 aa16.41■□□□□ 0.22
DDX56-203ENST00000421223 ARAP1Q96P48 1450 aa16.39■□□□□ 0.21
DDX56-203ENST00000421223 ERICH3Q5RHP9 1530 aa16.39■□□□□ 0.21
DDX56-203ENST00000421223 TDRD9Q8NDG6 1382 aaKnown RBP16.32■□□□□ 0.2
DDX56-203ENST00000421223 ARHGAP35Q9NRY4 1499 aa16.31■□□□□ 0.2
DDX56-203ENST00000421223 DIEXFQ68CQ4 756 aaKnown RBP16.29■□□□□ 0.2
DDX56-203ENST00000421223 TOPBP1Q92547 1522 aa16.28■□□□□ 0.2
DDX56-203ENST00000421223 POLA1P09884 1462 aaPredicted RBP16.27■□□□□ 0.2
DDX56-203ENST00000421223 PRDM2Q13029 1718 aa16.26■□□□□ 0.19
DDX56-203ENST00000421223 PELP1Q8IZL8 1130 aaKnown RBP16.25■□□□□ 0.19
DDX56-203ENST00000421223 FAM50AQ14320 339 aaKnown RBP16.24■□□□□ 0.19
DDX56-203ENST00000421223 DNMBPQ6XZF7 1577 aa16.21■□□□□ 0.19
DDX56-203ENST00000421223 PDS5BQ9NTI5 1447 aa16.2■□□□□ 0.18
DDX56-203ENST00000421223 URB2Q14146 1524 aaKnown RBP16.19■□□□□ 0.18
DDX56-203ENST00000421223 FHOD3Q2V2M9 1422 aa16.19■□□□□ 0.18
DDX56-203ENST00000421223 ZNF316A6NFI3 1004 aaPredicted RBP16.18■□□□□ 0.18
DDX56-203ENST00000421223 ABCA10Q8WWZ4 1543 aa16.16■□□□□ 0.18
DDX56-203ENST00000421223 CCNB3Q8WWL7 1395 aa16.15■□□□□ 0.18
DDX56-203ENST00000421223 ARID3CA6NKF2 412 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms