RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	UTP7	P40055	554 aa	Known RBP	6.34	□□□□□ -1.39
UBP9	YER098W	PUS5	Q06244	254 aa		6.34	□□□□□ -1.39
UBP9	YER098W	MCM1	P11746	286 aa		6.34	□□□□□ -1.39
UBP9	YER098W	MCD1	Q12158	566 aa		6.34	□□□□□ -1.39
UBP9	YER098W	NAN1	Q02931	896 aa	Known RBP	6.33	□□□□□ -1.4
UBP9	YER098W	OPI10	Q08202	246 aa		6.33	□□□□□ -1.4
UBP9	YER098W	YKL069W	P36088	180 aa		6.33	□□□□□ -1.4
UBP9	YER098W	SPF1	P39986	1215 aa	Known RBP	6.33	□□□□□ -1.4
UBP9	YER098W	NUP170	P38181	1502 aa		6.33	□□□□□ -1.4
UBP9	YER098W	SSK2	P53599	1579 aa		6.32	□□□□□ -1.4
UBP9	YER098W	UGA4	P32837	571 aa		6.32	□□□□□ -1.4
UBP9	YER098W	PRP40	P33203	583 aa	Known RBP	6.32	□□□□□ -1.4
UBP9	YER098W	LDH1	P38139	375 aa		6.32	□□□□□ -1.4
UBP9	YER098W	SYH1	Q02875	849 aa	Known RBP	6.32	□□□□□ -1.4
UBP9	YER098W	PHO8	P11491	566 aa		6.32	□□□□□ -1.4
UBP9	YER098W	STE6	P12866	1290 aa		6.32	□□□□□ -1.4
UBP9	YER098W	DUT1	P33317	147 aa		6.32	□□□□□ -1.4
UBP9	YER098W	YGR053C	P53234	283 aa		6.32	□□□□□ -1.4
UBP9	YER098W	YCS4	Q06156	1176 aa		6.32	□□□□□ -1.4
UBP9	YER098W	TIF6	Q12522	245 aa	Known RBP	6.32	□□□□□ -1.4
UBP9	YER098W	MSH4	P40965	878 aa	Predicted RBP	6.31	□□□□□ -1.4
UBP9	YER098W	RGD2	P43556	714 aa		6.31	□□□□□ -1.4
UBP9	YER098W	DFG5	Q05031	458 aa		6.31	□□□□□ -1.4
UBP9	YER098W	SRB8	P25648	1427 aa		6.31	□□□□□ -1.4
UBP9	YER098W	YHR020W	P38708	688 aa	Known RBP	6.3	□□□□□ -1.4
UBP9	YER098W	SUM1	P46676	1062 aa		6.3	□□□□□ -1.4
UBP9	YER098W	TYW3	P53177	273 aa		6.3	□□□□□ -1.4
UBP9	YER098W	SUB1	P54000	292 aa	Known RBP	6.3	□□□□□ -1.4
UBP9	YER098W	PAN1	P32521	1480 aa		6.3	□□□□□ -1.4
UBP9	YER098W	MSN1	P22148	382 aa		6.3	□□□□□ -1.4
UBP9	YER098W	MCM5	P29496	775 aa	Known RBP	6.3	□□□□□ -1.4
UBP9	YER098W	FIR1	P40020	876 aa		6.3	□□□□□ -1.4
UBP9	YER098W	NTA1	P40354	457 aa		6.3	□□□□□ -1.4
UBP9	YER098W	YGL081W	P53156	320 aa		6.3	□□□□□ -1.4
UBP9	YER098W	UTP14	Q04500	899 aa	Known RBP	6.3	□□□□□ -1.4
UBP9	YER098W	YML082W	Q04533	649 aa	Known RBP	6.3	□□□□□ -1.4
UBP9	YER098W	Q0182	Q9ZZW1	134 aa		6.3	□□□□□ -1.4
UBP9	YER098W	POL1	P13382	1468 aa		6.3	□□□□□ -1.4
UBP9	YER098W	MLP2	P40457	1679 aa		6.3	□□□□□ -1.4
UBP9	YER098W	DYS1	P38791	387 aa		6.29	□□□□□ -1.4
UBP9	YER098W	PSY2	P40164	858 aa		6.29	□□□□□ -1.4
UBP9	YER098W	YNL165W	P53891	406 aa		6.29	□□□□□ -1.4
UBP9	YER098W	FAL1	Q12099	399 aa	Known RBP	6.29	□□□□□ -1.4
UBP9	YER098W	YLR125W	Q12138	136 aa		6.29	□□□□□ -1.4
UBP9	YER098W	PEP1	P32319	1579 aa		6.29	□□□□□ -1.4
UBP9	YER098W	RPP2B	P02400	110 aa	Known RBP	6.29	□□□□□ -1.4
UBP9	YER098W	IRS4	P36115	615 aa	Known RBP	6.29	□□□□□ -1.4
UBP9	YER098W	QDR2	P40474	542 aa		6.29	□□□□□ -1.4
UBP9	YER098W	YPL109C	Q02981	657 aa		6.29	□□□□□ -1.4
UBP9	YER098W	YOL057W	Q08225	711 aa		6.29	□□□□□ -1.4
UBP9	YER098W	CCP1	P00431	361 aa		6.28	□□□□□ -1.4
UBP9	YER098W	FLP1	P03870	423 aa		6.28	□□□□□ -1.4
UBP9	YER098W	CWC22	P53333	577 aa	Known RBP	6.28	□□□□□ -1.4
UBP9	YER098W	FLC1	Q08967	793 aa		6.28	□□□□□ -1.4
UBP9	YER098W	UBP12	P39538	1254 aa		6.28	□□□□□ -1.4
UBP9	YER098W	CHZ1	P40019	153 aa	Predicted RBP	6.28	□□□□□ -1.4
UBP9	YER098W	YEN1	P40028	759 aa		6.28	□□□□□ -1.4
UBP9	YER098W	YJR115W	P47152	169 aa		6.28	□□□□□ -1.4
UBP9	YER098W	MLF3	P32047	452 aa		6.27	□□□□□ -1.41
UBP9	YER098W	THI4	P32318	326 aa		6.27	□□□□□ -1.41
UBP9	YER098W	BDP1	P46678	594 aa		6.27	□□□□□ -1.41
UBP9	YER098W	ULP1	Q02724	621 aa		6.27	□□□□□ -1.41
UBP9	YER098W	UTP4	Q06679	776 aa	Known RBP	6.27	□□□□□ -1.41
UBP9	YER098W	GYP1	Q08484	637 aa		6.27	□□□□□ -1.41
UBP9	YER098W	SIN3	P22579	1536 aa		6.27	□□□□□ -1.41
UBP9	YER098W	GCR1	P07261	785 aa		6.27	□□□□□ -1.41
UBP9	YER098W	SNF7	P39929	240 aa	Known RBP	6.27	□□□□□ -1.41
UBP9	YER098W	PIC2	P40035	300 aa		6.27	□□□□□ -1.41
UBP9	YER098W	ESP1	Q03018	1630 aa		6.26	□□□□□ -1.41
UBP9	YER098W	ERR1	P0CX10	437 aa		6.26	□□□□□ -1.41
UBP9	YER098W	ERR2	P0CX11	437 aa		6.26	□□□□□ -1.41
UBP9	YER098W	KAR2	P16474	682 aa	Known RBP	6.26	□□□□□ -1.41
UBP9	YER098W	BAS1	P22035	811 aa		6.26	□□□□□ -1.41
UBP9	YER098W	YBL086C	P38177	466 aa		6.26	□□□□□ -1.41
UBP9	YER098W	MON1	P53129	644 aa		6.26	□□□□□ -1.41
UBP9	YER098W	RSP5	P39940	809 aa	Known RBP	6.25	□□□□□ -1.41
UBP9	YER098W	DLD3	P39976	496 aa	Known RBP	6.25	□□□□□ -1.41
UBP9	YER098W	TPM2	P40414	161 aa		6.25	□□□□□ -1.41
UBP9	YER098W	ADI1	Q03677	179 aa		6.25	□□□□□ -1.41
UBP9	YER098W	RTT10	Q08924	1013 aa		6.25	□□□□□ -1.41
UBP9	YER098W	SRM1	P21827	482 aa		6.25	□□□□□ -1.41
UBP9	YER098W	YGR125W	P53273	1036 aa		6.25	□□□□□ -1.41
UBP9	YER098W	SAS4	Q04003	481 aa		6.25	□□□□□ -1.41
UBP9	YER098W	YLR419W	Q06698	1435 aa	Known RBP	6.25	□□□□□ -1.41
UBP9	YER098W	MRT4	P33201	236 aa	Known RBP	6.24	□□□□□ -1.41
UBP9	YER098W	CRP1	P38845	465 aa	Known RBP	6.24	□□□□□ -1.41
UBP9	YER098W	DNM1	P54861	757 aa		6.24	□□□□□ -1.41
UBP9	YER098W	TOP2	P06786	1428 aa	Known RBP	6.24	□□□□□ -1.41
UBP9	YER098W	STE5	P32917	917 aa		6.24	□□□□□ -1.41
UBP9	YER098W	BSD2	P38356	321 aa		6.24	□□□□□ -1.41
UBP9	YER098W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	6.24	□□□□□ -1.41	not detected
UBP9	YER098W	CTR9	P89105	1077 aa		6.24	□□□□□ -1.41
UBP9	YER098W	EEB1	Q02891	456 aa		6.24	□□□□□ -1.41
UBP9	YER098W	FRK1	Q03002	865 aa	Predicted RBP	6.24	□□□□□ -1.41
UBP9	YER098W	VPS72	Q03388	795 aa		6.24	□□□□□ -1.41
UBP9	YER098W	MRL1	Q06815	381 aa		6.24	□□□□□ -1.41
UBP9	YER098W	BUD21	Q08492	214 aa	Predicted RBP	6.24	□□□□□ -1.41
UBP9	YER098W	YBR184W	P38299	523 aa		6.23	□□□□□ -1.41
UBP9	YER098W	UBP9	P39967	754 aa		6.23	□□□□□ -1.41
UBP9	YER098W	COB	P00163	385 aa		6.23	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms