RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	ESC1	Q03661	1658 aa	Known RBP	5.26	□□□□□ -1.57
UBX5	YDR330W	YBR287W	P38355	427 aa		5.26	□□□□□ -1.57
UBX5	YDR330W	RAD55	P38953	406 aa		5.26	□□□□□ -1.57
UBX5	YDR330W	YTA6	P40328	754 aa		5.26	□□□□□ -1.57
UBX5	YDR330W	ALD6	P54115	500 aa	Known RBP	5.26	□□□□□ -1.57
UBX5	YDR330W	RSC4	Q02206	625 aa		5.26	□□□□□ -1.57
UBX5	YDR330W	VPS16	Q03308	798 aa		5.26	□□□□□ -1.57
UBX5	YDR330W	YOL098C	Q12496	1037 aa		5.26	□□□□□ -1.57
UBX5	YDR330W	GEA1	P47102	1408 aa	Predicted RBP	5.25	□□□□□ -1.57
UBX5	YDR330W	SNT2	P53127	1403 aa		5.25	□□□□□ -1.57
UBX5	YDR330W	PET112	P33893	541 aa		5.25	□□□□□ -1.57
UBX5	YDR330W	VAC8	P39968	578 aa		5.25	□□□□□ -1.57
UBX5	YDR330W	NTA1	P40354	457 aa		5.25	□□□□□ -1.57
UBX5	YDR330W	NUP170	P38181	1502 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	CYC8	P14922	966 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	MLF3	P32047	452 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	MNR2	P35724	969 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	BRN1	P38170	754 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	QDR2	P40474	542 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	ALD3	P54114	506 aa		5.24	□□□□□ -1.57
UBX5	YDR330W	RPA190	P10964	1664 aa	Known RBP	5.24	□□□□□ -1.57
UBX5	YDR330W	UGA3	P26370	528 aa		5.23	□□□□□ -1.57
UBX5	YDR330W	WRS1	Q12109	432 aa	Known RBP	5.23	□□□□□ -1.57
UBX5	YDR330W	MSN1	P22148	382 aa		5.23	□□□□□ -1.57
UBX5	YDR330W	IRS4	P36115	615 aa	Known RBP	5.23	□□□□□ -1.57
UBX5	YDR330W	MSN5	P52918	1224 aa		5.23	□□□□□ -1.57
UBX5	YDR330W	YNL165W	P53891	406 aa		5.23	□□□□□ -1.57
UBX5	YDR330W	DNF1	P32660	1571 aa		5.23	□□□□□ -1.57
UBX5	YDR330W	ARG82	P07250	355 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	RAD2	P07276	1031 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	AMS1	P22855	1083 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	AHP1	P38013	176 aa	Known RBP	5.22	□□□□□ -1.57
UBX5	YDR330W	ISW1	P38144	1129 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	YHL008C	P38750	627 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	NMD2	P38798	1089 aa	Known RBP	5.22	□□□□□ -1.57
UBX5	YDR330W	RGA1	P39083	1007 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	XDJ1	P39102	459 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	PSY2	P40164	858 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	JJJ2	P46997	583 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	YJL049W	P47048	450 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	CWC24	P53769	259 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	DOS2	P54858	310 aa		5.22	□□□□□ -1.57
UBX5	YDR330W	INP54	Q08227	384 aa	Known RBP	5.22	□□□□□ -1.57
UBX5	YDR330W	NTE1	Q04958	1679 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	HXK1	P04806	485 aa	Known RBP	5.21	□□□□□ -1.58
UBX5	YDR330W	SRP40	P32583	406 aa	Predicted RBP	5.21	□□□□□ -1.58
UBX5	YDR330W	KAP122	P32767	1081 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	SSN3	P39073	555 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	MRPS18	P42847	217 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	RGD2	P43556	714 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	IOC4	Q04213	475 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	DAL4	Q04895	635 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	YCS4	Q06156	1176 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	MET32	Q12041	191 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	MCD1	Q12158	566 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	TIF6	Q12522	245 aa	Known RBP	5.21	□□□□□ -1.58
UBX5	YDR330W	TY3B-G	Q99315	1547 aa		5.21	□□□□□ -1.58
UBX5	YDR330W	RPO21	P04050	1733 aa	Known RBP	5.2	□□□□□ -1.58
UBX5	YDR330W	KAR2	P16474	682 aa	Known RBP	5.2	□□□□□ -1.58
UBX5	YDR330W	GIP1	P38229	639 aa		5.2	□□□□□ -1.58
UBX5	YDR330W	MSB3	P48566	633 aa	Predicted RBP	5.2	□□□□□ -1.58
UBX5	YDR330W	MTO1	P53070	669 aa		5.2	□□□□□ -1.58
UBX5	YDR330W	HST3	P53687	447 aa		5.2	□□□□□ -1.58
UBX5	YDR330W	YAF9	P53930	226 aa		5.2	□□□□□ -1.58
UBX5	YDR330W	SPC42	P36094	363 aa		5.19	□□□□□ -1.58
UBX5	YDR330W	ECM2	P38241	364 aa	Known RBP	5.19	□□□□□ -1.58
UBX5	YDR330W	FAA3	P39002	694 aa		5.19	□□□□□ -1.58
UBX5	YDR330W	AAD14	P42884	376 aa		5.19	□□□□□ -1.58
UBX5	YDR330W	OSW7	P43611	510 aa		5.19	□□□□□ -1.58
UBX5	YDR330W	SSF2	Q12153	453 aa	Predicted RBP	5.19	□□□□□ -1.58
UBX5	YDR330W	SSM4	P40318	1319 aa		5.19	□□□□□ -1.58
UBX5	YDR330W	YBT1	P32386	1661 aa		5.19	□□□□□ -1.58
UBX5	YDR330W	IRC20	Q06554	1556 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	FLP1	P03870	423 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	IRE1	P32361	1115 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	YOR296W	Q08748	1289 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	GEA2	P39993	1459 aa	Known RBP	5.18	□□□□□ -1.58
UBX5	YDR330W	RPS31	P05759	152 aa	Known RBP	5.18	□□□□□ -1.58
UBX5	YDR330W	RPC31	P17890	251 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	PRE9	P23638	258 aa	Known RBP	5.18	□□□□□ -1.58
UBX5	YDR330W	PRP40	P33203	583 aa	Known RBP	5.18	□□□□□ -1.58
UBX5	YDR330W	YKL091C	P33324	310 aa	Known RBP	5.18	□□□□□ -1.58
UBX5	YDR330W	BSD2	P38356	321 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	AIM46	P38885	310 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	TOS4	Q06266	489 aa		5.18	□□□□□ -1.58
UBX5	YDR330W	CDC4	P07834	779 aa		5.17	□□□□□ -1.58
UBX5	YDR330W	AFT1	P22149	690 aa		5.17	□□□□□ -1.58
UBX5	YDR330W	SHM1	P37292	490 aa	Predicted RBP	5.17	□□□□□ -1.58
UBX5	YDR330W	RNH70	P53331	553 aa		5.17	□□□□□ -1.58
UBX5	YDR330W	SRF1	Q12516	437 aa		5.17	□□□□□ -1.58
UBX5	YDR330W	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
UBX5	YDR330W	PPG1	P32838	368 aa		5.16	□□□□□ -1.58
UBX5	YDR330W	IOC3	P43596	787 aa		5.16	□□□□□ -1.58
UBX5	YDR330W	CLA4	P48562	842 aa		5.16	□□□□□ -1.58
UBX5	YDR330W	VPS15	P22219	1454 aa		5.15	□□□□□ -1.58
UBX5	YDR330W	PDC6	P26263	563 aa	Known RBP	5.15	□□□□□ -1.58
UBX5	YDR330W	DAL1	P32375	460 aa		5.15	□□□□□ -1.58
UBX5	YDR330W	ASH1	P34233	588 aa		5.15	□□□□□ -1.58
UBX5	YDR330W	VTC4	P47075	721 aa		5.15	□□□□□ -1.58
UBX5	YDR330W	GDE1	Q02979	1223 aa		5.15	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms