RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 NUP155O75694 1391 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 LRRCC1Q9C099 1032 aa5.54□□□□□ -1.52
SCN1A-220ENST00000641603 SNX21Q969T3 373 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 STAG3Q9UJ98 1225 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 POTEDQ86YR6 584 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 CRACR2AQ9BSW2 395 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 BCL11BQ9C0K0 894 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 U2AF1L5P0DN76 240 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 U2AF1Q01081 240 aaKnown RBP eCLIP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 DDX19AQ9NUU7 478 aaKnown RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 USP25Q9UHP3 1055 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 XRCC6P12956 609 aaKnown RBP eCLIP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 TTC31Q49AM3 519 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 KANK4Q5T7N3 995 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 CPSF2Q9P2I0 782 aaKnown RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 ANKRD45Q5TZF3 282 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 CCDC150Q8NCX0 1101 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 DMTNQ08495 405 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 HSP90AB3PQ58FF7 597 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 RTF1Q92541 710 aaKnown RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 KCNH8Q96L42 1107 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 SCAND2PQ9GZW5 306 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 MKRN1Q9UHC7 482 aaKnown RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 PPP6R1Q9UPN7 881 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 SYCP1Q15431 976 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 CT47A1Q5JQC4 288 aaPredicted RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 FMNL3Q8IVF7 1028 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 PNISRQ8TF01 805 aaKnown RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 TRIM6-TRIM34B2RNG4 842 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 CBX1P83916 185 aa5.53□□□□□ -1.52
SCN1A-220ENST00000641603 ESF1Q9H501 851 aaKnown RBP5.53□□□□□ -1.52
SCN1A-220ENST00000641603 SRCIN1Q9C0H9 1055 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 ERC1Q8IUD2 1116 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 DHX16O60231 1041 aaKnown RBP5.52□□□□□ -1.53
SCN1A-220ENST00000641603 MAP3K11Q16584 847 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 EHBP1Q8NDI1 1231 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 MYRIPQ8NFW9 859 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 GIGYF2Q6Y7W6 1299 aaKnown RBP5.52□□□□□ -1.53
SCN1A-220ENST00000641603 ZNF500O60304 480 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-220ENST00000641603 SFPQP23246 707 aaKnown RBP eCLIP5.52□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC38Q502W7 563 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 ZHX1Q9UKY1 873 aaPredicted RBP5.52□□□□□ -1.53
SCN1A-220ENST00000641603 CFAP45Q9UL16 551 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 COG6Q9Y2V7 657 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 TRIM29Q14134 588 aa5.52□□□□□ -1.53
SCN1A-220ENST00000641603 ABCC11Q96J66 1382 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 HDGFP51858 240 aaKnown RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 CTCFLQ8NI51 663 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 SYNE3Q6ZMZ3 975 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 WDR63Q8IWG1 891 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.51□□□□□ -1.531e-6■■■□□ 16.7
SCN1A-220ENST00000641603 NUP62CLQ9H1M0 184 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 CASKIN1Q8WXD9 1431 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 KIF1CO43896 1103 aaKnown RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC148Q8NFR7 591 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ANKRD18AQ8IVF6 992 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 TNMDQ9H2S6 317 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 MROH2BQ7Z745 1585 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ANKRD18BA2A2Z9 1011 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 LRSAM1Q6UWE0 723 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 MIPOL1Q8TD10 442 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ATP8B1O43520 1251 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 GNAI1P63096 354 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 SPATA24Q86W54 205 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ARFGAP3Q9NP61 516 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ZNHIT6Q9NWK9 470 aaKnown RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 CHGAP10645 457 aaKnown RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 TMCO5BA8MYB1 307 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC146Q8IYE0 955 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 TBC1D32Q96NH3 1257 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 MNAT1P51948 309 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ANO10Q9NW15 660 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 SWAP70Q9UH65 585 aa5.51□□□□□ -1.53
SCN1A-220ENST00000641603 LRPPRCP42704 1394 aaKnown RBP5.51□□□□□ -1.53
SCN1A-220ENST00000641603 ABCC8Q09428 1581 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 VGFO15240 615 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 NOLC1Q14978 699 aaKnown RBP eCLIP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 CEP112Q8N8E3 955 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 SMARCC1Q92922 1105 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 NKTRP30414 1462 aaKnown RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 CAMSAP2Q08AD1 1489 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 CARMIL2Q6F5E8 1435 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 ELP1O95163 1332 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 RSRC1Q96IZ7 334 aaKnown RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 SDF4Q9BRK5 362 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 TNNT1P13805 278 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 NCBP3Q53F19 620 aaKnown RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 GPRASP1Q5JY77 1395 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 PPFIA3O75145 1194 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 SLU7O95391 586 aaKnown RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 SH2B1Q9NRF2 756 aaPredicted RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 SPECC1LQ69YQ0 1117 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 WDR66Q8TBY9 1149 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 RBM33Q96EV2 1170 aaKnown RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 MPHOSPH10O00566 681 aaKnown RBP5.5□□□□□ -1.53
SCN1A-220ENST00000641603 ATP6V1AP38606 617 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 TXLNAP40222 546 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 CCDC102AQ96A19 550 aa5.5□□□□□ -1.53
SCN1A-220ENST00000641603 EHBP1L1Q8N3D4 1523 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms