RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MYT1Q01538 1121 aa8.06□□□□□ -1.12
SCN1A-220ENST00000641603 PELP1Q8IZL8 1130 aaKnown RBP7.97□□□□□ -1.13
SCN1A-220ENST00000641603 TTBK1Q5TCY1 1321 aaPredicted RBP7.49□□□□□ -1.21
SCN1A-220ENST00000641603 ZEB1P37275 1124 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-220ENST00000641603 CENPBP07199 599 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-220ENST00000641603 CCER1Q8TC90 406 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-220ENST00000641603 NISCHQ9Y2I1 1504 aa7.29□□□□□ -1.24
SCN1A-220ENST00000641603 ERICH6Q7L0X2 663 aa7.15□□□□□ -1.27
SCN1A-220ENST00000641603 YTHDC1Q96MU7 727 aaKnown RBP7.14□□□□□ -1.27
SCN1A-220ENST00000641603 HRCP23327 699 aa7.12□□□□□ -1.27
SCN1A-220ENST00000641603 CLSPNQ9HAW4 1339 aa7.04□□□□□ -1.28
SCN1A-220ENST00000641603 NEFLP07196 543 aa7.01□□□□□ -1.29
SCN1A-220ENST00000641603 PCGF6Q9BYE7 350 aa7.01□□□□□ -1.29
SCN1A-220ENST00000641603 SUPT5HO00267 1087 aaKnown RBP7□□□□□ -1.29
SCN1A-220ENST00000641603 MYT1LQ9UL68 1186 aa6.99□□□□□ -1.29
SCN1A-220ENST00000641603 TRIM26Q12899 539 aaPredicted RBP6.94□□□□□ -1.3
SCN1A-220ENST00000641603 APLP2Q06481 763 aa6.92□□□□□ -1.3
SCN1A-220ENST00000641603 RTL5Q5HYW3 569 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-220ENST00000641603 GLIPR1L2Q4G1C9 344 aa6.8□□□□□ -1.32
SCN1A-220ENST00000641603 DCAF8L2P0C7V8 631 aa6.79□□□□□ -1.32
SCN1A-220ENST00000641603 FAM9AQ8IZU1 332 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-220ENST00000641603 DAXXQ9UER7 740 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-220ENST00000641603 ACIN1Q9UKV3 1341 aaKnown RBP6.74□□□□□ -1.33
SCN1A-220ENST00000641603 DIEXFQ68CQ4 756 aaKnown RBP6.71□□□□□ -1.34
SCN1A-220ENST00000641603 SHROOM4Q9ULL8 1493 aa6.7□□□□□ -1.34
SCN1A-220ENST00000641603 DCAF1Q9Y4B6 1507 aa6.69□□□□□ -1.34
SCN1A-220ENST00000641603 TRIM41Q8WV44 630 aa6.67□□□□□ -1.34
SCN1A-220ENST00000641603 GTF3C3Q9Y5Q9 886 aa6.67□□□□□ -1.34
SCN1A-220ENST00000641603 CDK11AQ9UQ88 783 aaPredicted RBP6.61□□□□□ -1.35
SCN1A-220ENST00000641603 CHIC1Q5VXU3 224 aa6.6□□□□□ -1.35
SCN1A-220ENST00000641603 ZNF316A6NFI3 1004 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-220ENST00000641603 ANP32EQ9BTT0 268 aa6.55□□□□□ -1.36
SCN1A-220ENST00000641603 ANP32AP39687 249 aaKnown RBP6.55□□□□□ -1.36
SCN1A-220ENST00000641603 CCDC180Q9P1Z9 1646 aa6.53□□□□□ -1.36
SCN1A-220ENST00000641603 PPARGC1BQ86YN6 1023 aaKnown RBP6.51□□□□□ -1.37
SCN1A-220ENST00000641603 SCAF1Q9H7N4 1312 aaKnown RBP6.49□□□□□ -1.37
SCN1A-220ENST00000641603 ERICH6BQ5W0A0 696 aa6.49□□□□□ -1.37
SCN1A-220ENST00000641603 UBTFP17480 764 aaKnown RBP6.46□□□□□ -1.37
SCN1A-220ENST00000641603 BCL11AQ9H165 835 aa6.45□□□□□ -1.38
SCN1A-220ENST00000641603 ANP32BQ92688 251 aaKnown RBP6.44□□□□□ -1.38
SCN1A-220ENST00000641603 NCLP19338 710 aaKnown RBP6.44□□□□□ -1.38
SCN1A-220ENST00000641603 ANP32CO43423 234 aa6.44□□□□□ -1.38
SCN1A-220ENST00000641603 TNNT2P45379 298 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-220ENST00000641603 EIF5BO60841 1220 aaKnown RBP6.4□□□□□ -1.38
SCN1A-220ENST00000641603 RANGAP1P46060 587 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-220ENST00000641603 NEUROD1Q13562 356 aa6.4□□□□□ -1.39
SCN1A-220ENST00000641603 TRIM44Q96DX7 344 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-220ENST00000641603 PPM1GO15355 546 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-220ENST00000641603 DDRGK1Q96HY6 314 aa6.38□□□□□ -1.39
SCN1A-220ENST00000641603 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-220ENST00000641603 ARID4BQ4LE39 1312 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-220ENST00000641603 EHMT2Q96KQ7 1210 aa6.37□□□□□ -1.39
SCN1A-220ENST00000641603 ZBTB47Q9UFB7 747 aaPredicted RBP6.36□□□□□ -1.39
SCN1A-220ENST00000641603 UPF2Q9HAU5 1272 aaKnown RBP6.33□□□□□ -1.4
SCN1A-220ENST00000641603 FKBP8Q14318 412 aa6.31□□□□□ -1.4
SCN1A-220ENST00000641603 LOC105371045A0A1W2PR82 267 aa6.31□□□□□ -1.4
SCN1A-220ENST00000641603 HNRNPUL2Q1KMD3 747 aaKnown RBP6.29□□□□□ -1.4
SCN1A-220ENST00000641603 BCANQ96GW7 911 aa6.28□□□□□ -1.4
SCN1A-220ENST00000641603 USP35Q9P2H5 1018 aa6.27□□□□□ -1.41
SCN1A-220ENST00000641603 BECN1Q14457 450 aa6.27□□□□□ -1.41
SCN1A-220ENST00000641603 RSPH6AQ9H0K4 717 aa6.27□□□□□ -1.41
SCN1A-220ENST00000641603 EEA1Q15075 1411 aa6.27□□□□□ -1.41
SCN1A-220ENST00000641603 NEFMP07197 916 aa6.26□□□□□ -1.41
SCN1A-220ENST00000641603 L1TD1Q5T7N2 865 aaKnown RBP6.26□□□□□ -1.41
SCN1A-220ENST00000641603 NOP58Q9Y2X3 529 aaKnown RBP6.25□□□□□ -1.41
SCN1A-220ENST00000641603 PTMSP20962 102 aa6.24□□□□□ -1.41
SCN1A-220ENST00000641603 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-220ENST00000641603 ZNF326Q5BKZ1 582 aaKnown RBP6.22□□□□□ -1.41
SCN1A-220ENST00000641603 CCDC136Q96JN2 1154 aa6.22□□□□□ -1.41
SCN1A-220ENST00000641603 PPP4R2Q9NY27 417 aa6.22□□□□□ -1.41
SCN1A-220ENST00000641603 TIMELESSQ9UNS1 1208 aa6.22□□□□□ -1.41
SCN1A-220ENST00000641603 SUPT16HQ9Y5B9 1047 aaKnown RBP6.22□□□□□ -1.41
SCN1A-220ENST00000641603 CDK11BP21127 795 aaKnown RBP6.21□□□□□ -1.42
SCN1A-220ENST00000641603 GOLGA6L22H0YM25 854 aa6.21□□□□□ -1.42
SCN1A-220ENST00000641603 DEKP35659 375 aaKnown RBP6.2□□□□□ -1.42
SCN1A-220ENST00000641603 CCER2I3L3R5 266 aa6.19□□□□□ -1.42
SCN1A-220ENST00000641603 TONSLQ96HA7 1378 aa6.19□□□□□ -1.42
SCN1A-220ENST00000641603 FANCIQ9NVI1 1328 aa6.19□□□□□ -1.42
SCN1A-220ENST00000641603 SLC24A1O60721 1099 aa6.18□□□□□ -1.42
SCN1A-220ENST00000641603 HSP90AA1P07900 732 aaKnown RBP6.18□□□□□ -1.42
SCN1A-220ENST00000641603 HNRNPUQ00839 825 aaKnown RBP eCLIP6.18□□□□□ -1.42
SCN1A-220ENST00000641603 NBR1Q14596 966 aa6.17□□□□□ -1.42
SCN1A-220ENST00000641603 MIER1Q8N108 512 aa6.16□□□□□ -1.42
SCN1A-220ENST00000641603 ZCCHC6Q5VYS8 1495 aaKnown RBP6.15□□□□□ -1.42
SCN1A-220ENST00000641603 CANXP27824 592 aaKnown RBP6.15□□□□□ -1.43
SCN1A-220ENST00000641603 RBM19Q9Y4C8 960 aaKnown RBP6.15□□□□□ -1.43
SCN1A-220ENST00000641603 NAP1L5Q96NT1 182 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-220ENST00000641603 CFAP44Q96MT7 982 aa6.14□□□□□ -1.43
SCN1A-220ENST00000641603 MTERF4Q7Z6M4 381 aaKnown RBP6.14□□□□□ -1.43
SCN1A-220ENST00000641603 ATP1B4Q9UN42 357 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-220ENST00000641603 CSRNP3Q8WYN3 585 aa6.14□□□□□ -1.43
SCN1A-220ENST00000641603 NPM2Q86SE8 214 aaKnown RBP6.14□□□□□ -1.43
SCN1A-220ENST00000641603 PNNQ9H307 717 aaKnown RBP6.14□□□□□ -1.43
SCN1A-220ENST00000641603 LAS1LQ9Y4W2 734 aaKnown RBP6.13□□□□□ -1.43
SCN1A-220ENST00000641603 MAP7D2Q96T17 732 aa6.12□□□□□ -1.43
SCN1A-220ENST00000641603 TSHZ2Q9NRE2 1034 aa6.12□□□□□ -1.43
SCN1A-220ENST00000641603 CHAF1AQ13111 956 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-220ENST00000641603 TCERG1O14776 1098 aaKnown RBP6.1□□□□□ -1.43
SCN1A-220ENST00000641603 ITGAEP38570 1179 aa6.1□□□□□ -1.43
SCN1A-220ENST00000641603 POLR3GLQ9BT43 218 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms