RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 CNPY4Q8N129 248 aa14.75□□□□□ -0.05
SHMT2-201ENST00000328923 ZKSCAN5Q9Y2L8 839 aa14.75□□□□□ -0.05
SHMT2-201ENST00000328923 DEPDC5O75140 1603 aa14.75□□□□□ -0.05
SHMT2-201ENST00000328923 ZMYM3Q14202 1370 aa14.74□□□□□ -0.05
SHMT2-201ENST00000328923 ATP10AO60312 1499 aa14.74□□□□□ -0.05
SHMT2-201ENST00000328923 ZNF692Q9BU19 519 aaPredicted RBP14.73□□□□□ -0.05
SHMT2-201ENST00000328923 FRMPD1Q5SYB0 1578 aa14.73□□□□□ -0.05
SHMT2-201ENST00000328923 UPF2Q9HAU5 1272 aaKnown RBP14.73□□□□□ -0.05
SHMT2-201ENST00000328923 HDAC5Q9UQL6 1122 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 KDM2AQ9Y2K7 1162 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 HECW2Q9P2P5 1572 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 MLH3Q9UHC1 1453 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 PLEKHH1Q9ULM0 1364 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 MYCNP04198 464 aaPredicted RBP14.72□□□□□ -0.05
SHMT2-201ENST00000328923 MAPK8IP3Q9UPT6 1336 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 NINLQ9Y2I6 1382 aa14.72□□□□□ -0.05
SHMT2-201ENST00000328923 SOX12O15370 315 aa14.71□□□□□ -0.05
SHMT2-201ENST00000328923 NBPF1Q3BBV0 1214 aa14.71□□□□□ -0.05
SHMT2-201ENST00000328923 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-201ENST00000328923 TNPO1Q92973 898 aaKnown RBP14.71□□□□□ -0.05
SHMT2-201ENST00000328923 TRIM6-TRIM34B2RNG4 842 aa14.7□□□□□ -0.06
SHMT2-201ENST00000328923 MMP14P50281 582 aa14.7□□□□□ -0.06
SHMT2-201ENST00000328923 GOLGA2Q08379 1002 aa14.7□□□□□ -0.06
SHMT2-201ENST00000328923 TRIM34Q9BYJ4 488 aa14.7□□□□□ -0.06
SHMT2-201ENST00000328923 BCCIPQ9P287 314 aaKnown RBP eCLIP14.7□□□□□ -0.06
SHMT2-201ENST00000328923 CAPN2P17655 700 aa14.7□□□□□ -0.06
SHMT2-201ENST00000328923 IGHDP01880 384 aa14.69□□□□□ -0.06
SHMT2-201ENST00000328923 PSEN1P49768 467 aa14.69□□□□□ -0.06
SHMT2-201ENST00000328923 SKOR2Q2VWA4 1001 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-201ENST00000328923 DISP3Q9P2K9 1392 aa14.69□□□□□ -0.06
SHMT2-201ENST00000328923 U2AF2P26368 475 aaKnown RBP eCLIP14.69□□□□□ -0.064e-8■■□□□ 14.1
SHMT2-201ENST00000328923 TRMT2AQ8IZ69 625 aaKnown RBP14.69□□□□□ -0.06
SHMT2-201ENST00000328923 TESK2Q96S53 571 aa14.69□□□□□ -0.06
SHMT2-201ENST00000328923 RNF17Q9BXT8 1623 aaKnown RBP14.69□□□□□ -0.06
SHMT2-201ENST00000328923 PDLIM2Q96JY6 352 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 A2MP01023 1474 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 NKTRP30414 1462 aaKnown RBP14.68□□□□□ -0.06
SHMT2-201ENST00000328923 VWDEQ8N2E2 1590 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 RGL3Q3MIN7 710 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 CC2D1BQ5T0F9 858 aaKnown RBP14.68□□□□□ -0.06
SHMT2-201ENST00000328923 WWC1Q8IX03 1113 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 ADAMTS8Q9UP79 889 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 TET3O43151 1660 aa14.68□□□□□ -0.06
SHMT2-201ENST00000328923 ABCA6Q8N139 1617 aa14.67□□□□□ -0.06
SHMT2-201ENST00000328923 PIK3C2GO75747 1445 aa14.67□□□□□ -0.06
SHMT2-201ENST00000328923 SLFN5Q08AF3 891 aa14.67□□□□□ -0.06
SHMT2-201ENST00000328923 KIF3BO15066 747 aa14.66□□□□□ -0.06
SHMT2-201ENST00000328923 MCM5P33992 734 aa14.66□□□□□ -0.06
SHMT2-201ENST00000328923 PDCL2Q8N4E4 241 aa14.66□□□□□ -0.06
SHMT2-201ENST00000328923 CGNL1Q0VF96 1302 aa14.66□□□□□ -0.06
SHMT2-201ENST00000328923 MROH1Q8NDA8 1641 aa14.66□□□□□ -0.06
SHMT2-201ENST00000328923 SPHKAPQ2M3C7 1700 aa14.66□□□□□ -0.06
SHMT2-201ENST00000328923 RAPGEF3O95398 923 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 WDR43Q15061 677 aaKnown RBP eCLIP14.65□□□□□ -0.06
SHMT2-201ENST00000328923 TIGD1Q96MW7 591 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 GBP4Q96PP9 640 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 KANK1Q14678 1352 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 SYNMO15061 1565 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 TRPM2O94759 1503 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 DIP2CQ9Y2E4 1556 aa14.65□□□□□ -0.06
SHMT2-201ENST00000328923 APPP05067 770 aa14.64□□□□□ -0.07
SHMT2-201ENST00000328923 GTF2F1P35269 517 aaKnown RBP eCLIP14.64□□□□□ -0.07
SHMT2-201ENST00000328923 DDIT3P35638 169 aa14.64□□□□□ -0.07
SHMT2-201ENST00000328923 TMF1P82094 1093 aa14.64□□□□□ -0.07
SHMT2-201ENST00000328923 BCL2L12Q9HB09 334 aa14.64□□□□□ -0.07
SHMT2-201ENST00000328923 PTPRTO14522 1441 aa14.64□□□□□ -0.07
SHMT2-201ENST00000328923 PDE3AQ14432 1141 aa14.63□□□□□ -0.07
SHMT2-201ENST00000328923 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.63□□□□□ -0.07
SHMT2-201ENST00000328923 ILDR1Q86SU0 546 aaPredicted RBP14.63□□□□□ -0.07
SHMT2-201ENST00000328923 RBSNQ9H1K0 784 aa14.63□□□□□ -0.07
SHMT2-201ENST00000328923 MLECQ14165 292 aa14.63□□□□□ -0.07
SHMT2-201ENST00000328923 TULP2O00295 520 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 CLGNO14967 610 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 PRIMPOLQ96LW4 560 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 KIF3AQ9Y496 699 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 CEP152O94986 1710 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 NPC1L1Q9UHC9 1359 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 CCDC66A2RUB6 948 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 PRR29P0C7W0 189 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 PPP2R1AP30153 589 aa14.62□□□□□ -0.07
SHMT2-201ENST00000328923 SLFN14P0C7P3 912 aa14.61□□□□□ -0.07
SHMT2-201ENST00000328923 HMGN5P82970 282 aaKnown RBP14.61□□□□□ -0.07
SHMT2-201ENST00000328923 IBTKQ9P2D0 1353 aaPredicted RBP14.61□□□□□ -0.07
SHMT2-201ENST00000328923 HSCBQ8IWL3 235 aa14.61□□□□□ -0.07
SHMT2-201ENST00000328923 CCDC39Q9UFE4 941 aa14.61□□□□□ -0.07
SHMT2-201ENST00000328923 CLTCL1P53675 1640 aa14.61□□□□□ -0.07
SHMT2-201ENST00000328923 KIAA2012Q0VF49 1180 aa14.6□□□□□ -0.07
SHMT2-201ENST00000328923 ASXL1Q8IXJ9 1541 aa14.6□□□□□ -0.07
SHMT2-201ENST00000328923 RBM25P49756 843 aaKnown RBP14.6□□□□□ -0.07
SHMT2-201ENST00000328923 RAB3GAP1Q15042 981 aa14.6□□□□□ -0.07
SHMT2-201ENST00000328923 TRERF1Q96PN7 1200 aa14.6□□□□□ -0.07
SHMT2-201ENST00000328923 DDX49Q9Y6V7 483 aaKnown RBP14.6□□□□□ -0.07
SHMT2-201ENST00000328923 IQGAP1P46940 1657 aa14.59□□□□□ -0.07
SHMT2-201ENST00000328923 GABPB1Q06547 395 aaPredicted RBP14.59□□□□□ -0.07
SHMT2-201ENST00000328923 YEATS2Q9ULM3 1422 aa14.59□□□□□ -0.07
SHMT2-201ENST00000328923 NCOA3Q9Y6Q9 1424 aa14.59□□□□□ -0.07
SHMT2-201ENST00000328923 ADAMTSL3P82987 1691 aa14.59□□□□□ -0.07
SHMT2-201ENST00000328923 HSP90AB1P08238 724 aaKnown RBP14.58□□□□□ -0.07
SHMT2-201ENST00000328923 PTMSP20962 102 aa14.58□□□□□ -0.07
SHMT2-201ENST00000328923 CLUAP1Q96AJ1 413 aa14.58□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms