RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PPRC1Q5VV67 1664 aaKnown RBP13.86□□□□□ -0.19
CLK3-226ENST00000569406 SPAG9O60271 1321 aaKnown RBP13.85□□□□□ -0.19
CLK3-226ENST00000569406 MROH2AA6NES4 1674 aa13.85□□□□□ -0.19
CLK3-226ENST00000569406 MYOM1P52179 1685 aa13.85□□□□□ -0.19
CLK3-226ENST00000569406 UTP14CQ5TAP6 766 aaKnown RBP13.85□□□□□ -0.19
CLK3-226ENST00000569406 BCCIPQ9P287 314 aaKnown RBP eCLIP13.85□□□□□ -0.19
CLK3-226ENST00000569406 ADGRL1O94910 1474 aa13.85□□□□□ -0.19
CLK3-226ENST00000569406 RGS22Q8NE09 1264 aa13.84□□□□□ -0.19
CLK3-226ENST00000569406 KCNG1Q9UIX4 513 aa13.84□□□□□ -0.19
CLK3-226ENST00000569406 ERBB4Q15303 1308 aa13.84□□□□□ -0.19
CLK3-226ENST00000569406 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.84□□□□□ -0.19
CLK3-226ENST00000569406 MYH16Q9H6N6 1097 aa13.84□□□□□ -0.19
CLK3-226ENST00000569406 RIPK4P57078 832 aa13.83□□□□□ -0.19
CLK3-226ENST00000569406 SCAPERQ9BY12 1400 aa13.83□□□□□ -0.2
CLK3-226ENST00000569406 EFCAB6Q5THR3 1501 aa13.82□□□□□ -0.2
CLK3-226ENST00000569406 KIAA1210Q9ULL0 1709 aa13.82□□□□□ -0.2
CLK3-226ENST00000569406 SMG6Q86US8 1419 aaKnown RBP13.82□□□□□ -0.2
CLK3-226ENST00000569406 RNF123Q5XPI4 1314 aa13.82□□□□□ -0.2
CLK3-226ENST00000569406 RNF216Q9NWF9 866 aaPredicted RBP13.81□□□□□ -0.2
CLK3-226ENST00000569406 CGNQ9P2M7 1197 aaKnown RBP13.81□□□□□ -0.2
CLK3-226ENST00000569406 LMTK2Q8IWU2 1503 aa13.81□□□□□ -0.2
CLK3-226ENST00000569406 APPP05067 770 aa13.8□□□□□ -0.2
CLK3-226ENST00000569406 ABCA6Q8N139 1617 aa13.8□□□□□ -0.2
CLK3-226ENST00000569406 ZSCAN20P17040 1043 aaPredicted RBP13.8□□□□□ -0.2
CLK3-226ENST00000569406 BRD4O60885 1362 aaPredicted RBP13.79□□□□□ -0.2
CLK3-226ENST00000569406 KTN1Q86UP2 1357 aaKnown RBP13.79□□□□□ -0.2
CLK3-226ENST00000569406 NRXN1Q9ULB1 1477 aa13.79□□□□□ -0.2
CLK3-226ENST00000569406 MAP3K4Q9Y6R4 1608 aa13.78□□□□□ -0.2
CLK3-226ENST00000569406 PATL2C9JE40 543 aaKnown RBP13.78□□□□□ -0.2
CLK3-226ENST00000569406 R3HCC1Q9Y3T6 440 aaKnown RBP13.78□□□□□ -0.2
CLK3-226ENST00000569406 SKAP1Q86WV1 359 aa13.78□□□□□ -0.2
CLK3-226ENST00000569406 MYBBP1AQ9BQG0 1328 aaKnown RBP13.78□□□□□ -0.2
CLK3-226ENST00000569406 SIGLEC1Q9BZZ2 1709 aa13.78□□□□□ -0.2
CLK3-226ENST00000569406 TMC1Q8TDI8 760 aa13.77□□□□□ -0.2
CLK3-226ENST00000569406 KIF20AO95235 890 aa13.77□□□□□ -0.21
CLK3-226ENST00000569406 MS4A1P11836 297 aa13.77□□□□□ -0.21
CLK3-226ENST00000569406 SLKQ9H2G2 1235 aaPredicted RBP13.76□□□□□ -0.21
CLK3-226ENST00000569406 KIF1BO60333 1816 aa13.75□□□□□ -0.21
CLK3-226ENST00000569406 ZNF518AQ6AHZ1 1483 aa13.75□□□□□ -0.21
CLK3-226ENST00000569406 POGZQ7Z3K3 1410 aa13.75□□□□□ -0.21
CLK3-226ENST00000569406 MYOM2P54296 1465 aa13.75□□□□□ -0.21
CLK3-226ENST00000569406 HDAC5Q9UQL6 1122 aa13.75□□□□□ -0.21
CLK3-226ENST00000569406 RALBP1Q15311 655 aa13.75□□□□□ -0.21
CLK3-226ENST00000569406 ADGRB3O60242 1522 aa13.74□□□□□ -0.21
CLK3-226ENST00000569406 SYNMO15061 1565 aa13.74□□□□□ -0.21
CLK3-226ENST00000569406 MYCNP04198 464 aaPredicted RBP13.73□□□□□ -0.21
CLK3-226ENST00000569406 SCAF11Q99590 1463 aaKnown RBP13.73□□□□□ -0.21
CLK3-226ENST00000569406 MLH3Q9UHC1 1453 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 MYO3AQ8NEV4 1616 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 MTERF4Q7Z6M4 381 aaKnown RBP13.73□□□□□ -0.21
CLK3-226ENST00000569406 CNKSR2Q8WXI2 1034 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 ZBTB9Q96C00 473 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 CHMP4CQ96CF2 233 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 PPLO60437 1756 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 CBX1P83916 185 aa13.73□□□□□ -0.21
CLK3-226ENST00000569406 KIF3BO15066 747 aa13.72□□□□□ -0.21
CLK3-226ENST00000569406 HECW2Q9P2P5 1572 aa13.72□□□□□ -0.21
CLK3-226ENST00000569406 UQCRHLA0A096LP55 91 aa13.72□□□□□ -0.21
CLK3-226ENST00000569406 LETM1O95202 739 aaPredicted RBP13.72□□□□□ -0.21
CLK3-226ENST00000569406 UQCRHP07919 91 aa13.72□□□□□ -0.21
CLK3-226ENST00000569406 PANK3Q9H999 370 aa13.72□□□□□ -0.21
CLK3-226ENST00000569406 BLMP54132 1417 aaPredicted RBP13.71□□□□□ -0.21
CLK3-226ENST00000569406 NPATQ14207 1427 aa13.71□□□□□ -0.21
CLK3-226ENST00000569406 RICTORQ6R327 1708 aa13.71□□□□□ -0.21
CLK3-226ENST00000569406 ZC3H13Q5T200 1668 aaKnown RBP13.71□□□□□ -0.21
CLK3-226ENST00000569406 ZMYM4Q5VZL5 1548 aa13.71□□□□□ -0.22
CLK3-226ENST00000569406 MRE11P49959 708 aa13.71□□□□□ -0.22
CLK3-226ENST00000569406 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.71□□□□□ -0.22
CLK3-226ENST00000569406 GTPBP4Q9BZE4 634 aaKnown RBP13.71□□□□□ -0.22
CLK3-226ENST00000569406 NUDCQ9Y266 331 aa13.71□□□□□ -0.22
CLK3-226ENST00000569406 CFAP74Q9C0B2 1584 aa13.71□□□□□ -0.22
CLK3-226ENST00000569406 ADGRF5Q8IZF2 1346 aa13.7□□□□□ -0.22
CLK3-226ENST00000569406 PIK3C2BO00750 1634 aa13.7□□□□□ -0.22
CLK3-226ENST00000569406 IGSF3O75054 1194 aa13.7□□□□□ -0.22
CLK3-226ENST00000569406 CFAP65Q6ZU64 1925 aaKnown RBP13.7□□□□□ -0.22
CLK3-226ENST00000569406 EXOC6Q8TAG9 804 aa13.7□□□□□ -0.22
CLK3-226ENST00000569406 CD109Q6YHK3 1445 aa13.7□□□□□ -0.22
CLK3-226ENST00000569406 ERVK-7P63135 1459 aa13.69□□□□□ -0.22
CLK3-226ENST00000569406 FAM193AP78312 1265 aa13.69□□□□□ -0.22
CLK3-226ENST00000569406 CCDC94Q9BW85 323 aaPredicted RBP13.69□□□□□ -0.22
CLK3-226ENST00000569406 ADGRB1O14514 1584 aa13.69□□□□□ -0.22
CLK3-226ENST00000569406 HSP90B1P14625 803 aaKnown RBP13.69□□□□□ -0.22
CLK3-226ENST00000569406 NLRP13Q86W25 1043 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 OSCARQ8IYS5 282 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 SLC52A1Q9NWF4 448 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 OFD1O75665 1012 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 MSNP26038 577 aaKnown RBP13.68□□□□□ -0.22
CLK3-226ENST00000569406 ABCC3O15438 1527 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 FSD2A1L4K1 749 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 NGEFQ8N5V2 710 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 DIP2CQ9Y2E4 1556 aa13.68□□□□□ -0.22
CLK3-226ENST00000569406 TAF3Q5VWG9 929 aa13.67□□□□□ -0.22
CLK3-226ENST00000569406 INSRP06213 1382 aa13.67□□□□□ -0.22
CLK3-226ENST00000569406 CAMSAP1Q5T5Y3 1602 aa13.67□□□□□ -0.22
CLK3-226ENST00000569406 GRPEL1Q9HAV7 217 aa13.67□□□□□ -0.22
CLK3-226ENST00000569406 KDM5AP29375 1690 aaKnown RBP13.66□□□□□ -0.22
CLK3-226ENST00000569406 SETBP1Q9Y6X0 1596 aa13.66□□□□□ -0.22
CLK3-226ENST00000569406 KCNJ4P48050 445 aa13.66□□□□□ -0.22
CLK3-226ENST00000569406 TMED8Q6PL24 325 aaPredicted RBP13.66□□□□□ -0.22
CLK3-226ENST00000569406 TMF1P82094 1093 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms