RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NISCHQ9Y2I1 1504 aa21.95■■□□□ 1.1
CLK3-226ENST00000569406 PELP1Q8IZL8 1130 aaKnown RBP19.16■□□□□ 0.66
CLK3-226ENST00000569406 CCDC180Q9P1Z9 1646 aa18.81■□□□□ 0.6
CLK3-226ENST00000569406 MYT1Q01538 1121 aa18.74■□□□□ 0.59
CLK3-226ENST00000569406 ZCCHC6Q5VYS8 1495 aaKnown RBP18.58■□□□□ 0.56
CLK3-226ENST00000569406 SHROOM4Q9ULL8 1493 aa18.31■□□□□ 0.52
CLK3-226ENST00000569406 HRCP23327 699 aa18.11■□□□□ 0.49
CLK3-226ENST00000569406 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
CLK3-226ENST00000569406 PPARGC1BQ86YN6 1023 aaKnown RBP17.9■□□□□ 0.46
CLK3-226ENST00000569406 TTBK1Q5TCY1 1321 aaPredicted RBP17.84■□□□□ 0.45
CLK3-226ENST00000569406 SCAF1Q9H7N4 1312 aaKnown RBP17.84■□□□□ 0.45
CLK3-226ENST00000569406 SUPT5HO00267 1087 aaKnown RBP17.78■□□□□ 0.44
CLK3-226ENST00000569406 DCAF8L2P0C7V8 631 aa17.78■□□□□ 0.44
CLK3-226ENST00000569406 PRKCSHP14314 528 aaPredicted RBP17.75■□□□□ 0.43
CLK3-226ENST00000569406 MYO15BQ96JP2 1530 aa17.65■□□□□ 0.42
CLK3-226ENST00000569406 BCL11AQ9H165 835 aa17.54■□□□□ 0.4
CLK3-226ENST00000569406 ABCC9O60706 1549 aa17.49■□□□□ 0.39
CLK3-226ENST00000569406 SCRIBQ14160 1630 aa17.47■□□□□ 0.39
CLK3-226ENST00000569406 PCGF6Q9BYE7 350 aa17.41■□□□□ 0.38
CLK3-226ENST00000569406 CHIC1Q5VXU3 224 aa17.39■□□□□ 0.37
CLK3-226ENST00000569406 NACADO15069 1562 aa17.35■□□□□ 0.37
CLK3-226ENST00000569406 FAM9AQ8IZU1 332 aaPredicted RBP17.35■□□□□ 0.37
CLK3-226ENST00000569406 RSF1Q96T23 1441 aaPredicted RBP17.28■□□□□ 0.36
CLK3-226ENST00000569406 ERICH6Q7L0X2 663 aa17.26■□□□□ 0.35
CLK3-226ENST00000569406 CECR2Q9BXF3 1484 aa17.14■□□□□ 0.33
CLK3-226ENST00000569406 CENPBP07199 599 aaPredicted RBP17.12■□□□□ 0.33
CLK3-226ENST00000569406 RB1CC1Q8TDY2 1594 aa17.1■□□□□ 0.33
CLK3-226ENST00000569406 GTF3C3Q9Y5Q9 886 aa17.07■□□□□ 0.32
CLK3-226ENST00000569406 MROH2BQ7Z745 1585 aa17.07■□□□□ 0.32
CLK3-226ENST00000569406 UNC13AQ9UPW8 1703 aa17.06■□□□□ 0.32
CLK3-226ENST00000569406 APLP2Q06481 763 aa17.03■□□□□ 0.32
CLK3-226ENST00000569406 ACIN1Q9UKV3 1341 aaKnown RBP17.03■□□□□ 0.32
CLK3-226ENST00000569406 NEUROD1Q13562 356 aa16.98■□□□□ 0.31
CLK3-226ENST00000569406 WIZO95785 1651 aa16.98■□□□□ 0.31
CLK3-226ENST00000569406 BAZ1AQ9NRL2 1556 aaPredicted RBP16.86■□□□□ 0.29
CLK3-226ENST00000569406 EIF4G1Q04637 1599 aaKnown RBP16.85■□□□□ 0.29
CLK3-226ENST00000569406 LOC105371045A0A1W2PR82 267 aa16.82■□□□□ 0.28
CLK3-226ENST00000569406 BICRAQ9NZM4 1560 aa16.81■□□□□ 0.28
CLK3-226ENST00000569406 SMARCA4P51532 1647 aa16.77■□□□□ 0.28
CLK3-226ENST00000569406 ANP32EQ9BTT0 268 aa16.71■□□□□ 0.27
CLK3-226ENST00000569406 SLC24A1O60721 1099 aa16.7■□□□□ 0.26
CLK3-226ENST00000569406 TOP2AP11388 1531 aaKnown RBP16.67■□□□□ 0.26
CLK3-226ENST00000569406 ZEB1P37275 1124 aaPredicted RBP16.65■□□□□ 0.26
CLK3-226ENST00000569406 CSRNP3Q8WYN3 585 aa16.64■□□□□ 0.25
CLK3-226ENST00000569406 SMARCA2P51531 1590 aa16.62■□□□□ 0.25
CLK3-226ENST00000569406 CCDC88BA6NC98 1476 aa16.59■□□□□ 0.25
CLK3-226ENST00000569406 TRIM41Q8WV44 630 aa16.58■□□□□ 0.25
CLK3-226ENST00000569406 PEG3Q9GZU2 1588 aa16.56■□□□□ 0.24
CLK3-226ENST00000569406 PABPN1Q86U42 306 aaKnown RBP eCLIP16.51■□□□□ 0.233e-7■□□□□ 9.5
CLK3-226ENST00000569406 EHMT2Q96KQ7 1210 aa16.5■□□□□ 0.23
CLK3-226ENST00000569406 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
CLK3-226ENST00000569406 ANO8Q9HCE9 1232 aaPredicted RBP16.39■□□□□ 0.22
CLK3-226ENST00000569406 ATAD2BQ9ULI0 1458 aa16.35■□□□□ 0.21
CLK3-226ENST00000569406 TRIM26Q12899 539 aaPredicted RBP16.33■□□□□ 0.21
CLK3-226ENST00000569406 EIF5BO60841 1220 aaKnown RBP16.32■□□□□ 0.2
CLK3-226ENST00000569406 YTHDC1Q96MU7 727 aaKnown RBP16.31■□□□□ 0.2
CLK3-226ENST00000569406 SOGA1O94964 1423 aa16.26■□□□□ 0.19
CLK3-226ENST00000569406 RUSC2Q8N2Y8 1516 aa16.24■□□□□ 0.19
CLK3-226ENST00000569406 SYNJ1O43426 1573 aa16.21■□□□□ 0.19
CLK3-226ENST00000569406 DIEXFQ68CQ4 756 aaKnown RBP16.2■□□□□ 0.18
CLK3-226ENST00000569406 BAZ1BQ9UIG0 1483 aaKnown RBP16.19■□□□□ 0.18
CLK3-226ENST00000569406 WRNQ14191 1432 aaPredicted RBP eCLIP16.13■□□□□ 0.17
CLK3-226ENST00000569406 CCDC136Q96JN2 1154 aa16.11■□□□□ 0.17
CLK3-226ENST00000569406 PLEKHG5O94827 1062 aa16.11■□□□□ 0.17
CLK3-226ENST00000569406 TSHZ2Q9NRE2 1034 aa16.1■□□□□ 0.17
CLK3-226ENST00000569406 HMGXB3Q12766 1538 aa16.08■□□□□ 0.16
CLK3-226ENST00000569406 NCAPD3P42695 1498 aa16.07■□□□□ 0.16
CLK3-226ENST00000569406 DAXXQ9UER7 740 aaPredicted RBP16.07■□□□□ 0.16
CLK3-226ENST00000569406 UBE2Q2Q8WVN8 375 aa16.06■□□□□ 0.16
CLK3-226ENST00000569406 EEA1Q15075 1411 aa16.05■□□□□ 0.16
CLK3-226ENST00000569406 SALL2Q9Y467 1007 aaPredicted RBP16.03■□□□□ 0.16
CLK3-226ENST00000569406 CEP162Q5TB80 1403 aa16.03■□□□□ 0.16
CLK3-226ENST00000569406 TNIKQ9UKE5 1360 aa16.02■□□□□ 0.16
CLK3-226ENST00000569406 TOP2BQ02880 1626 aa16.02■□□□□ 0.15
CLK3-226ENST00000569406 BIVM-ERCC5R4GMW8 1640 aa16.01■□□□□ 0.15
CLK3-226ENST00000569406 KIF21BO75037 1637 aa15.98■□□□□ 0.15
CLK3-226ENST00000569406 GOLGA3Q08378 1498 aa15.93■□□□□ 0.14
CLK3-226ENST00000569406 CUX1P39880 1505 aa15.9■□□□□ 0.14
CLK3-226ENST00000569406 CFTRP13569 1480 aa15.9■□□□□ 0.14
CLK3-226ENST00000569406 RAPGEF2Q9Y4G8 1499 aa15.87■□□□□ 0.13
CLK3-226ENST00000569406 CEP164Q9UPV0 1460 aa15.87■□□□□ 0.13
CLK3-226ENST00000569406 PRDM2Q13029 1718 aa15.87■□□□□ 0.13
CLK3-226ENST00000569406 SUPT16HQ9Y5B9 1047 aaKnown RBP15.86■□□□□ 0.13
CLK3-226ENST00000569406 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.85■□□□□ 0.13
CLK3-226ENST00000569406 PKNOX2Q96KN3 472 aa15.85■□□□□ 0.13
CLK3-226ENST00000569406 PODXL2Q9NZ53 605 aa15.85■□□□□ 0.13
CLK3-226ENST00000569406 PRXQ9BXM0 1461 aa15.8■□□□□ 0.12
CLK3-226ENST00000569406 CC2D2AQ9P2K1 1620 aa15.77■□□□□ 0.11
CLK3-226ENST00000569406 UBTFP17480 764 aaKnown RBP15.75■□□□□ 0.11
CLK3-226ENST00000569406 DEKP35659 375 aaKnown RBP15.75■□□□□ 0.11
CLK3-226ENST00000569406 CCER1Q8TC90 406 aaPredicted RBP15.75■□□□□ 0.11
CLK3-226ENST00000569406 ERICH3Q5RHP9 1530 aa15.74■□□□□ 0.11
CLK3-226ENST00000569406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.72■□□□□ 0.11
CLK3-226ENST00000569406 CLIP1P30622 1438 aa15.72■□□□□ 0.11
CLK3-226ENST00000569406 VPS8Q8N3P4 1428 aa15.68■□□□□ 0.1
CLK3-226ENST00000569406 CADPSQ9ULU8 1353 aa15.66■□□□□ 0.1
CLK3-226ENST00000569406 MIER1Q8N108 512 aa15.66■□□□□ 0.1
CLK3-226ENST00000569406 RTN4Q9NQC3 1192 aaKnown RBP15.66■□□□□ 0.1
CLK3-226ENST00000569406 ARAP1Q96P48 1450 aa15.65■□□□□ 0.1
CLK3-226ENST00000569406 RBM19Q9Y4C8 960 aaKnown RBP15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms