RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 GGNBP2Q9H3C7 697 aa10.92□□□□□ -0.66
CLIP1-218ENST00000545889 ADGBQ8N7X0 1667 aa10.92□□□□□ -0.66
CLIP1-218ENST00000545889 SF3B2Q13435 895 aaKnown RBP10.91□□□□□ -0.66
CLIP1-218ENST00000545889 SYTL4Q96C24 671 aaPredicted RBP10.91□□□□□ -0.66
CLIP1-218ENST00000545889 PPP4R2Q9NY27 417 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 MLH3Q9UHC1 1453 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 GCC2Q8IWJ2 1684 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 HSPA2P54652 639 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 NUTM2GQ5VZR2 741 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 CDK19Q9BWU1 502 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 ABCA9Q8IUA7 1624 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 NLRP13Q86W25 1043 aa10.91□□□□□ -0.66
CLIP1-218ENST00000545889 IPO9Q96P70 1041 aaKnown RBP10.9□□□□□ -0.66
CLIP1-218ENST00000545889 C14orf93Q9H972 538 aaKnown RBP10.9□□□□□ -0.66
CLIP1-218ENST00000545889 NPATQ14207 1427 aa10.9□□□□□ -0.66
CLIP1-218ENST00000545889 CABP1Q9NZU7 370 aa10.9□□□□□ -0.66
CLIP1-218ENST00000545889 CCDC146Q8IYE0 955 aa10.9□□□□□ -0.66
CLIP1-218ENST00000545889 STK31Q9BXU1 1019 aa10.89□□□□□ -0.67
CLIP1-218ENST00000545889 PSME1Q06323 249 aa10.89□□□□□ -0.67
CLIP1-218ENST00000545889 TPRNQ4KMQ1 711 aa10.89□□□□□ -0.67
CLIP1-218ENST00000545889 CFAP74Q9C0B2 1584 aa10.89□□□□□ -0.67
CLIP1-218ENST00000545889 CALD1Q05682 793 aaKnown RBP10.89□□□□□ -0.67
CLIP1-218ENST00000545889 CGNL1Q0VF96 1302 aa10.89□□□□□ -0.67
CLIP1-218ENST00000545889 AMOTL2Q9Y2J4 779 aa10.89□□□□□ -0.67
CLIP1-218ENST00000545889 MAST1Q9Y2H9 1570 aa10.88□□□□□ -0.67
CLIP1-218ENST00000545889 CNTLNQ9NXG0 1405 aa10.88□□□□□ -0.67
CLIP1-218ENST00000545889 HECW2Q9P2P5 1572 aa10.87□□□□□ -0.67
CLIP1-218ENST00000545889 MYBBP1AQ9BQG0 1328 aaKnown RBP10.87□□□□□ -0.67
CLIP1-218ENST00000545889 PRAG1Q86YV5 1406 aa10.87□□□□□ -0.67
CLIP1-218ENST00000545889 GOLGA6L22H0YM25 854 aa10.87□□□□□ -0.67
CLIP1-218ENST00000545889 HDAC5Q9UQL6 1122 aa10.87□□□□□ -0.67
CLIP1-218ENST00000545889 ARAP3Q8WWN8 1544 aa10.86□□□□□ -0.67
CLIP1-218ENST00000545889 ESCO1Q5FWF5 840 aa10.86□□□□□ -0.67
CLIP1-218ENST00000545889 UGGT1Q9NYU2 1555 aa10.86□□□□□ -0.67
CLIP1-218ENST00000545889 COG3Q96JB2 828 aa10.86□□□□□ -0.67
CLIP1-218ENST00000545889 BECN1Q14457 450 aa10.86□□□□□ -0.67
CLIP1-218ENST00000545889 RIMS2Q9UQ26 1411 aa10.86□□□□□ -0.67
CLIP1-218ENST00000545889 AMER1Q5JTC6 1135 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-218ENST00000545889 APBB1O00213 710 aa10.85□□□□□ -0.67
CLIP1-218ENST00000545889 CCDC184Q52MB2 194 aa10.85□□□□□ -0.67
CLIP1-218ENST00000545889 XPCQ01831 940 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-218ENST00000545889 PDE4CQ08493 712 aa10.85□□□□□ -0.67
CLIP1-218ENST00000545889 RRP7AQ9Y3A4 280 aaKnown RBP10.84□□□□□ -0.67
CLIP1-218ENST00000545889 C1orf141Q5JVX7 400 aa10.84□□□□□ -0.67
CLIP1-218ENST00000545889 DISP3Q9P2K9 1392 aa10.83□□□□□ -0.68
CLIP1-218ENST00000545889 IPO8O15397 1037 aaKnown RBP10.83□□□□□ -0.68
CLIP1-218ENST00000545889 NUDT16Q96DE0 195 aaKnown RBP10.83□□□□□ -0.68
CLIP1-218ENST00000545889 MAGI2Q86UL8 1455 aa10.82□□□□□ -0.68
CLIP1-218ENST00000545889 NCKAP5LQ9HCH0 1330 aa10.82□□□□□ -0.68
CLIP1-218ENST00000545889 NLRP6P59044 892 aa10.82□□□□□ -0.68
CLIP1-218ENST00000545889 TEFQ10587 303 aa10.82□□□□□ -0.68
CLIP1-218ENST00000545889 PLA2R1Q13018 1463 aa10.82□□□□□ -0.68
CLIP1-218ENST00000545889 SCAF11Q99590 1463 aaKnown RBP10.82□□□□□ -0.68
CLIP1-218ENST00000545889 GSE1Q14687 1217 aa10.82□□□□□ -0.68
CLIP1-218ENST00000545889 PPP1R1BQ9UD71 204 aaPredicted RBP10.82□□□□□ -0.68
CLIP1-218ENST00000545889 RGS3P49796 1198 aa10.81□□□□□ -0.68
CLIP1-218ENST00000545889 COL17A1Q9UMD9 1497 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-218ENST00000545889 LTKP29376 864 aa10.81□□□□□ -0.68
CLIP1-218ENST00000545889 MTHFSP49914 203 aa10.81□□□□□ -0.68
CLIP1-218ENST00000545889 PIP4K2BP78356 416 aa10.81□□□□□ -0.68
CLIP1-218ENST00000545889 TTC5Q8N0Z6 440 aa10.81□□□□□ -0.68
CLIP1-218ENST00000545889 CCDC61Q9Y6R9 512 aa10.8□□□□□ -0.68
CLIP1-218ENST00000545889 RALGAPBQ86X10 1494 aa10.8□□□□□ -0.68
CLIP1-218ENST00000545889 DIP2BQ9P265 1576 aa10.8□□□□□ -0.68
CLIP1-218ENST00000545889 GNL2Q13823 731 aaKnown RBP10.8□□□□□ -0.68
CLIP1-218ENST00000545889 TESK2Q96S53 571 aa10.8□□□□□ -0.68
CLIP1-218ENST00000545889 PLXNC1O60486 1568 aa10.79□□□□□ -0.68
CLIP1-218ENST00000545889 PRDM15P57071 1507 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-218ENST00000545889 KIAA1211Q6ZU35 1233 aa10.79□□□□□ -0.68
CLIP1-218ENST00000545889 ABTB2Q8N961 1025 aa10.79□□□□□ -0.68
CLIP1-218ENST00000545889 USP35Q9P2H5 1018 aa10.79□□□□□ -0.68
CLIP1-218ENST00000545889 NUTM2BA6NNL0 878 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-218ENST00000545889 NUTM2EB1AL46 878 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-218ENST00000545889 NUTM2AQ8IVF1 878 aaPredicted RBP10.79□□□□□ -0.68
CLIP1-218ENST00000545889 ARID3AQ99856 593 aa10.79□□□□□ -0.68
CLIP1-218ENST00000545889 WASLO00401 505 aaPredicted RBP10.78□□□□□ -0.68
CLIP1-218ENST00000545889 GOLGA6L4A6NEF3 574 aa10.78□□□□□ -0.68
CLIP1-218ENST00000545889 PPP2R1AP30153 589 aa10.78□□□□□ -0.68
CLIP1-218ENST00000545889 SLC4A10Q6U841 1118 aa10.78□□□□□ -0.68
CLIP1-218ENST00000545889 APAF1O14727 1248 aa10.78□□□□□ -0.68
CLIP1-218ENST00000545889 LMOD3Q0VAK6 560 aa10.78□□□□□ -0.68
CLIP1-218ENST00000545889 CROCC2H7BZ55 1655 aa10.78□□□□□ -0.68
CLIP1-218ENST00000545889 KCNA6P17658 529 aa10.77□□□□□ -0.68
CLIP1-218ENST00000545889 RAPGEF4Q8WZA2 1011 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 FOXO3O43524 673 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 HMOX1P09601 288 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 TOMM22Q9NS69 142 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 NLRP2Q9NX02 1062 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 ABCC3O15438 1527 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 MCCP23508 829 aa10.77□□□□□ -0.69
CLIP1-218ENST00000545889 NGEFQ8N5V2 710 aa10.76□□□□□ -0.69
CLIP1-218ENST00000545889 NSD3Q9BZ95 1437 aa10.76□□□□□ -0.69
CLIP1-218ENST00000545889 ATAD2Q6PL18 1390 aa10.76□□□□□ -0.69
CLIP1-218ENST00000545889 FBLN1P23142 703 aa10.76□□□□□ -0.69
CLIP1-218ENST00000545889 ADAMTS8Q9UP79 889 aa10.76□□□□□ -0.69
CLIP1-218ENST00000545889 KDM5DQ9BY66 1539 aa10.76□□□□□ -0.69
CLIP1-218ENST00000545889 UHRF1BP1Q6BDS2 1440 aa10.75□□□□□ -0.69
CLIP1-218ENST00000545889 DIAPH1O60610 1272 aaKnown RBP10.75□□□□□ -0.69
CLIP1-218ENST00000545889 RRS1Q15050 365 aaKnown RBP10.75□□□□□ -0.69
CLIP1-218ENST00000545889 NME9Q86XW9 330 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms