RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 TRIM34Q9BYJ4 488 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 TSPYL1Q9H0U9 437 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 ST20-MTHFSA0A0A6YYL1 179 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 PES1O00541 588 aaKnown RBP7.33□□□□□ -1.24
SCN1A-203ENST00000409050 CNTROBQ8N137 903 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 TAOK2Q9UL54 1235 aa7.33□□□□□ -1.24
SCN1A-203ENST00000409050 ERLIN1O75477 346 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 RALYLQ86SE5 291 aaKnown RBP7.32□□□□□ -1.24
SCN1A-203ENST00000409050 PNISRQ8TF01 805 aaKnown RBP7.32□□□□□ -1.24
SCN1A-203ENST00000409050 CRBNQ96SW2 442 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 SRCIN1Q9C0H9 1055 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 CBFA2T2O43439 604 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 PCMTD1Q96MG8 357 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-203ENST00000409050 EIF3JO75822 258 aaKnown RBP7.32□□□□□ -1.24
SCN1A-203ENST00000409050 CTDP1Q9Y5B0 961 aaPredicted RBP7.32□□□□□ -1.24
SCN1A-203ENST00000409050 FHOD3Q2V2M9 1422 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 TXLNAP40222 546 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 ERICH3Q5RHP9 1530 aa7.32□□□□□ -1.24
SCN1A-203ENST00000409050 TRHP20396 242 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-203ENST00000409050 NASPP49321 788 aaPredicted RBP7.31□□□□□ -1.24
SCN1A-203ENST00000409050 CCAR2Q8N163 923 aaKnown RBP7.31□□□□□ -1.24
SCN1A-203ENST00000409050 KIF21BO75037 1637 aa7.31□□□□□ -1.24
SCN1A-203ENST00000409050 FGD6Q6ZV73 1430 aa7.31□□□□□ -1.24
SCN1A-203ENST00000409050 SLC3A2P08195 630 aaKnown RBP7.31□□□□□ -1.24
SCN1A-203ENST00000409050 MCTP1Q6DN14 999 aa7.31□□□□□ -1.24
SCN1A-203ENST00000409050 GAS2L2Q8NHY3 880 aa7.31□□□□□ -1.24
SCN1A-203ENST00000409050 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.31□□□□□ -1.24
SCN1A-203ENST00000409050 PTPRGP23470 1445 aa7.31□□□□□ -1.24
SCN1A-203ENST00000409050 LEKR1Q6ZMV7 388 aa7.31□□□□□ -1.24
SCN1A-203ENST00000409050 SAFB2Q14151 953 aaKnown RBP eCLIP7.3□□□□□ -1.24
SCN1A-203ENST00000409050 EXOC6Q8TAG9 804 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 ZSCAN31Q96LW9 406 aaPredicted RBP7.3□□□□□ -1.24
SCN1A-203ENST00000409050 GBP3Q9H0R5 595 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 EFCAB5A4FU69 1503 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 TSPY26PQ9H489 355 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 IFT57Q9NWB7 429 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 KINO60870 393 aaKnown RBP7.3□□□□□ -1.24
SCN1A-203ENST00000409050 JPH4Q96JJ6 628 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 CCDC43Q96MW1 224 aaKnown RBP7.3□□□□□ -1.24
SCN1A-203ENST00000409050 PRM3Q9NNZ6 103 aa7.3□□□□□ -1.24
SCN1A-203ENST00000409050 DHX29Q7Z478 1369 aaKnown RBP7.3□□□□□ -1.24
SCN1A-203ENST00000409050 CASKIN1Q8WXD9 1431 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 MCM3P25205 808 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 VSIG10Q8N0Z9 540 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 ZNHIT6Q9NWK9 470 aaKnown RBP7.29□□□□□ -1.24
SCN1A-203ENST00000409050 DAPK1P53355 1430 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 WDR33Q9C0J8 1336 aaKnown RBP7.29□□□□□ -1.24
SCN1A-203ENST00000409050 ODF2Q5BJF6 829 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 CCDC146Q8IYE0 955 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 PLEKHH1Q9ULM0 1364 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 OFD1O75665 1012 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 VPS53Q5VIR6 699 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 CREBRFQ8IUR6 639 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 ATAD2BQ9ULI0 1458 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 STIM1Q13586 685 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 CCDC30Q5VVM6 783 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 WDR63Q8IWG1 891 aa7.29□□□□□ -1.24
SCN1A-203ENST00000409050 SOX12O15370 315 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 RIPK4P57078 832 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 CT47A1Q5JQC4 288 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 CLASRPQ8N2M8 674 aaKnown RBP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 INCENPQ9NQS7 918 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 MAGEC2Q9UBF1 373 aaPredicted RBP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 TBC1D2BQ9UPU7 963 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 COG6Q9Y2V7 657 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 CCDC192P0DO97 292 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 NFXL1Q6ZNB6 911 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 FAM107BQ9H098 131 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 ZSCAN25Q6NSZ9 544 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 TDRD9Q8NDG6 1382 aaKnown RBP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 HNRNPMP52272 730 aaKnown RBP eCLIP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 KRT32Q14532 448 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 R3HCC1Q9Y3T6 440 aaKnown RBP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 SMARCA4P51532 1647 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 GOLGA6L10A6NI86 522 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 APAF1O14727 1248 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 CDKL5O76039 1030 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 EPS15P42566 896 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 CCT4P50991 539 aaKnown RBP7.28□□□□□ -1.24
SCN1A-203ENST00000409050 ZNF592Q92610 1267 aa7.28□□□□□ -1.24
SCN1A-203ENST00000409050 SDF4Q9BRK5 362 aa7.27□□□□□ -1.25
SCN1A-203ENST00000409050 H0YHG0 523 aa7.27□□□□□ -1.25
SCN1A-203ENST00000409050 UBTFL1P0CB47 393 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-203ENST00000409050 RPGRIP1LQ68CZ1 1315 aa7.27□□□□□ -1.25
SCN1A-203ENST00000409050 POLA1P09884 1462 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-203ENST00000409050 NFKBIBQ15653 356 aa7.27□□□□□ -1.25
SCN1A-203ENST00000409050 ZNF330Q9Y3S2 320 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-203ENST00000409050 VPS37CA5D8V6 355 aaPredicted RBP7.27□□□□□ -1.25
SCN1A-203ENST00000409050 FKBP5Q13451 457 aaPredicted RBP7.26□□□□□ -1.25
SCN1A-203ENST00000409050 DNAI2Q9GZS0 605 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 TRAK1Q9UPV9 953 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 RRP9O43818 475 aaKnown RBP7.26□□□□□ -1.25
SCN1A-203ENST00000409050 TRAK2O60296 914 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 MLECQ14165 292 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 WASF1Q92558 559 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 PKNOX2Q96KN3 472 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 SMG6Q86US8 1419 aaKnown RBP7.26□□□□□ -1.25
SCN1A-203ENST00000409050 SMTNL1A8MU46 457 aa7.26□□□□□ -1.25
SCN1A-203ENST00000409050 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.26□□□□□ -1.25
SCN1A-203ENST00000409050 FAM13BQ9NYF5 915 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms