RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 PAXIP1Q6ZW49 1069 aaPredicted RBP11.98□□□□□ -0.49
SF3A3-201ENST00000373019 CC2D1BQ5T0F9 858 aaKnown RBP11.98□□□□□ -0.49
SF3A3-201ENST00000373019 PLCD3Q8N3E9 789 aa11.98□□□□□ -0.49
SF3A3-201ENST00000373019 SCAPERQ9BY12 1400 aa11.98□□□□□ -0.49
SF3A3-201ENST00000373019 ZBTB22O15209 634 aa11.97□□□□□ -0.49
SF3A3-201ENST00000373019 TNNT2P45379 298 aaPredicted RBP11.97□□□□□ -0.49
SF3A3-201ENST00000373019 ZKSCAN5Q9Y2L8 839 aa11.97□□□□□ -0.49
SF3A3-201ENST00000373019 CCDC144AA2RUR9 1427 aa11.97□□□□□ -0.49
SF3A3-201ENST00000373019 RAPGEF3O95398 923 aa11.96□□□□□ -0.5
SF3A3-201ENST00000373019 CSPP1Q1MSJ5 1256 aa11.96□□□□□ -0.5
SF3A3-201ENST00000373019 CGNL1Q0VF96 1302 aa11.96□□□□□ -0.5
SF3A3-201ENST00000373019 RSPH4AQ5TD94 716 aa11.96□□□□□ -0.5
SF3A3-201ENST00000373019 TSPY4P0CV99 314 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 TSPY10P0CW01 314 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 SMC5Q8IY18 1101 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 TSC1Q92574 1164 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 GBP4Q96PP9 640 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 TSPOAP1O95153 1857 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 PDZRN3Q9UPQ7 1066 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 ARHGAP5Q13017 1502 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 COG6Q9Y2V7 657 aa11.95□□□□□ -0.5
SF3A3-201ENST00000373019 NKTRP30414 1462 aaKnown RBP11.94□□□□□ -0.5
SF3A3-201ENST00000373019 DIP2BQ9P265 1576 aa11.94□□□□□ -0.5
SF3A3-201ENST00000373019 ROCK1Q13464 1354 aa11.94□□□□□ -0.5
SF3A3-201ENST00000373019 PDE3AQ14432 1141 aa11.94□□□□□ -0.5
SF3A3-201ENST00000373019 PANK1Q8TE04 598 aa11.94□□□□□ -0.5
SF3A3-201ENST00000373019 HSCBQ8IWL3 235 aa11.94□□□□□ -0.5
SF3A3-201ENST00000373019 PCDHB15Q9Y5E8 787 aa11.94□□□□□ -0.5
SF3A3-201ENST00000373019 MYRIPQ8NFW9 859 aa11.93□□□□□ -0.5
SF3A3-201ENST00000373019 MFAP1P55081 439 aaKnown RBP11.93□□□□□ -0.5
SF3A3-201ENST00000373019 KLHL40Q2TBA0 621 aa11.93□□□□□ -0.5
SF3A3-201ENST00000373019 CIZ1Q9ULV3 898 aaPredicted RBP11.93□□□□□ -0.5
SF3A3-201ENST00000373019 CAMSAP2Q08AD1 1489 aa11.93□□□□□ -0.5
SF3A3-201ENST00000373019 ZNF445P59923 1031 aa11.93□□□□□ -0.5
SF3A3-201ENST00000373019 RBSNQ9H1K0 784 aa11.93□□□□□ -0.5
SF3A3-201ENST00000373019 MCM5P33992 734 aa11.92□□□□□ -0.5
SF3A3-201ENST00000373019 FANCAO15360 1455 aa11.92□□□□□ -0.5
SF3A3-201ENST00000373019 SNX21Q969T3 373 aa11.91□□□□□ -0.5
SF3A3-201ENST00000373019 PTMSP20962 102 aa11.91□□□□□ -0.5
SF3A3-201ENST00000373019 KIAA1107Q9UPP5 1409 aa11.91□□□□□ -0.5
SF3A3-201ENST00000373019 CLEC17AQ6ZS10 378 aa11.91□□□□□ -0.5
SF3A3-201ENST00000373019 PLCH2O75038 1416 aa11.9□□□□□ -0.5
SF3A3-201ENST00000373019 DAPK1P53355 1430 aa11.9□□□□□ -0.5
SF3A3-201ENST00000373019 GTF2F1P35269 517 aaKnown RBP eCLIP11.9□□□□□ -0.5
SF3A3-201ENST00000373019 ARHGAP31Q2M1Z3 1444 aa11.9□□□□□ -0.5
SF3A3-201ENST00000373019 IGSF3O75054 1194 aa11.9□□□□□ -0.5
SF3A3-201ENST00000373019 ESF1Q9H501 851 aaKnown RBP11.9□□□□□ -0.5
SF3A3-201ENST00000373019 GLI2P10070 1586 aa11.9□□□□□ -0.5
SF3A3-201ENST00000373019 DMRT2Q9Y5R5 561 aa11.9□□□□□ -0.51
SF3A3-201ENST00000373019 HNRNPMP52272 730 aaKnown RBP eCLIP11.89□□□□□ -0.51
SF3A3-201ENST00000373019 TAF3Q5VWG9 929 aa11.89□□□□□ -0.51
SF3A3-201ENST00000373019 CGNQ9P2M7 1197 aaKnown RBP11.89□□□□□ -0.51
SF3A3-201ENST00000373019 DDX49Q9Y6V7 483 aaKnown RBP11.89□□□□□ -0.51
SF3A3-201ENST00000373019 HSP90AB1P08238 724 aaKnown RBP11.89□□□□□ -0.51
SF3A3-201ENST00000373019 PMFBP1Q8TBY8 1022 aa11.89□□□□□ -0.51
SF3A3-201ENST00000373019 ZSCAN23Q3MJ62 389 aa11.89□□□□□ -0.51
SF3A3-201ENST00000373019 ABCC5O15440 1437 aa11.89□□□□□ -0.51
SF3A3-201ENST00000373019 SSFA2P28290 1259 aa11.88□□□□□ -0.51
SF3A3-201ENST00000373019 FTSJ3Q8IY81 847 aaKnown RBP11.88□□□□□ -0.51
SF3A3-201ENST00000373019 ADGRL1O94910 1474 aa11.88□□□□□ -0.51
SF3A3-201ENST00000373019 PRIM1P49642 420 aaKnown RBP11.88□□□□□ -0.51
SF3A3-201ENST00000373019 RBM25P49756 843 aaKnown RBP11.88□□□□□ -0.51
SF3A3-201ENST00000373019 SPDYE4A6NLX3 237 aa11.88□□□□□ -0.51
SF3A3-201ENST00000373019 CD2BP2O95400 341 aaKnown RBP11.88□□□□□ -0.51
SF3A3-201ENST00000373019 SPAG9O60271 1321 aaKnown RBP11.87□□□□□ -0.51
SF3A3-201ENST00000373019 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.87□□□□□ -0.51
SF3A3-201ENST00000373019 ARHGEF12Q9NZN5 1544 aa11.87□□□□□ -0.51
SF3A3-201ENST00000373019 NEO1Q92859 1461 aa11.87□□□□□ -0.51
SF3A3-201ENST00000373019 FAM177BA6PVY3 158 aa11.87□□□□□ -0.51
SF3A3-201ENST00000373019 IRX5P78411 483 aaPredicted RBP11.87□□□□□ -0.51
SF3A3-201ENST00000373019 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.87□□□□□ -0.518e-7■■■□□ 14.8
SF3A3-201ENST00000373019 NINLQ9Y2I6 1382 aa11.86□□□□□ -0.51
SF3A3-201ENST00000373019 AK9Q5TCS8 1911 aa11.86□□□□□ -0.51
SF3A3-201ENST00000373019 DNMT1P26358 1616 aaKnown RBP11.86□□□□□ -0.51
SF3A3-201ENST00000373019 BAG4O95429 457 aaKnown RBP11.86□□□□□ -0.51
SF3A3-201ENST00000373019 RLBP1P12271 317 aa11.86□□□□□ -0.51
SF3A3-201ENST00000373019 KIF2CQ99661 725 aa11.86□□□□□ -0.51
SF3A3-201ENST00000373019 AFAP1Q8N556 730 aa11.86□□□□□ -0.51
SF3A3-201ENST00000373019 ZNF644Q9H582 1327 aaPredicted RBP11.86□□□□□ -0.51
SF3A3-201ENST00000373019 PKD2Q13563 968 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 TNNQ9UQP3 1299 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 DISP3Q9P2K9 1392 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 FOXD4L1Q9NU39 408 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 KDM2AQ9Y2K7 1162 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 ABCA9Q8IUA7 1624 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 HMGN5P82970 282 aaKnown RBP11.85□□□□□ -0.51
SF3A3-201ENST00000373019 WDR43Q15061 677 aaKnown RBP eCLIP11.85□□□□□ -0.51
SF3A3-201ENST00000373019 CAVIN1Q6NZI2 390 aaKnown RBP11.85□□□□□ -0.51
SF3A3-201ENST00000373019 CCDC39Q9UFE4 941 aa11.85□□□□□ -0.51
SF3A3-201ENST00000373019 COL17A1Q9UMD9 1497 aaPredicted RBP11.85□□□□□ -0.51
SF3A3-201ENST00000373019 PPP2R1AP30153 589 aa11.84□□□□□ -0.51
SF3A3-201ENST00000373019 DHX37Q8IY37 1157 aaKnown RBP11.84□□□□□ -0.51
SF3A3-201ENST00000373019 PRIMPOLQ96LW4 560 aa11.84□□□□□ -0.51
SF3A3-201ENST00000373019 CCDC146Q8IYE0 955 aa11.84□□□□□ -0.51
SF3A3-201ENST00000373019 ANKRD30AQ9BXX3 1397 aa11.84□□□□□ -0.51
SF3A3-201ENST00000373019 E9PSI1 815 aa11.84□□□□□ -0.51
SF3A3-201ENST00000373019 PLXNC1O60486 1568 aa11.84□□□□□ -0.51
SF3A3-201ENST00000373019 GPATCH8Q9UKJ3 1502 aaKnown RBP11.83□□□□□ -0.51
SF3A3-201ENST00000373019 KIF13AQ9H1H9 1805 aa11.83□□□□□ -0.52
SF3A3-201ENST00000373019 ZBTB7CA1YPR0 619 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms