RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 NISCHQ9Y2I1 1504 aa18.03■□□□□ 0.48
SF3A3-201ENST00000373019 HRCP23327 699 aa16.42■□□□□ 0.22
SF3A3-201ENST00000373019 PELP1Q8IZL8 1130 aaKnown RBP16.38■□□□□ 0.21
SF3A3-201ENST00000373019 PPARGC1BQ86YN6 1023 aaKnown RBP16.07■□□□□ 0.16
SF3A3-201ENST00000373019 DCAF8L2P0C7V8 631 aa15.88■□□□□ 0.13
SF3A3-201ENST00000373019 CCDC180Q9P1Z9 1646 aa15.85■□□□□ 0.13
SF3A3-201ENST00000373019 MYT1Q01538 1121 aa15.83■□□□□ 0.13
SF3A3-201ENST00000373019 PCGF6Q9BYE7 350 aa15.83■□□□□ 0.12
SF3A3-201ENST00000373019 SCAF1Q9H7N4 1312 aaKnown RBP15.8■□□□□ 0.12
SF3A3-201ENST00000373019 MYO15BQ96JP2 1530 aa15.68■□□□□ 0.1
SF3A3-201ENST00000373019 ABCC9O60706 1549 aa15.64■□□□□ 0.09
SF3A3-201ENST00000373019 SUPT5HO00267 1087 aaKnown RBP15.35■□□□□ 0.05
SF3A3-201ENST00000373019 CHIC1Q5VXU3 224 aa15.34■□□□□ 0.05
SF3A3-201ENST00000373019 DCAF1Q9Y4B6 1507 aa15.34■□□□□ 0.05
SF3A3-201ENST00000373019 SHROOM4Q9ULL8 1493 aa15.25■□□□□ 0.03
SF3A3-201ENST00000373019 ACIN1Q9UKV3 1341 aaKnown RBP15.23■□□□□ 0.03
SF3A3-201ENST00000373019 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
SF3A3-201ENST00000373019 NEUROD1Q13562 356 aa15.2■□□□□ 0.02
SF3A3-201ENST00000373019 ZEB1P37275 1124 aaPredicted RBP15.18■□□□□ 0.02
SF3A3-201ENST00000373019 GTF3C3Q9Y5Q9 886 aa15.12■□□□□ 0.01
SF3A3-201ENST00000373019 LOC105371045A0A1W2PR82 267 aa15.03■□□□□ -0
SF3A3-201ENST00000373019 RB1CC1Q8TDY2 1594 aa15.01□□□□□ -0.01
SF3A3-201ENST00000373019 TTBK1Q5TCY1 1321 aaPredicted RBP15.01□□□□□ -0.01
SF3A3-201ENST00000373019 ZCCHC6Q5VYS8 1495 aaKnown RBP15□□□□□ -0.01
SF3A3-201ENST00000373019 NACADO15069 1562 aa14.99□□□□□ -0.01
SF3A3-201ENST00000373019 CENPBP07199 599 aaPredicted RBP14.87□□□□□ -0.03
SF3A3-201ENST00000373019 PABPN1Q86U42 306 aaKnown RBP eCLIP14.87□□□□□ -0.03
SF3A3-201ENST00000373019 BCL11AQ9H165 835 aa14.86□□□□□ -0.03
SF3A3-201ENST00000373019 FAM9AQ8IZU1 332 aaPredicted RBP14.78□□□□□ -0.04
SF3A3-201ENST00000373019 DIEXFQ68CQ4 756 aaKnown RBP14.72□□□□□ -0.05
SF3A3-201ENST00000373019 SCRIBQ14160 1630 aa14.64□□□□□ -0.07
SF3A3-201ENST00000373019 PRKCSHP14314 528 aaPredicted RBP14.61□□□□□ -0.07
SF3A3-201ENST00000373019 ANP32EQ9BTT0 268 aa14.59□□□□□ -0.07
SF3A3-201ENST00000373019 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.53□□□□□ -0.08
SF3A3-201ENST00000373019 TRIM41Q8WV44 630 aa14.52□□□□□ -0.09
SF3A3-201ENST00000373019 YTHDC1Q96MU7 727 aaKnown RBP14.48□□□□□ -0.09
SF3A3-201ENST00000373019 CSRNP3Q8WYN3 585 aa14.47□□□□□ -0.09
SF3A3-201ENST00000373019 CCER1Q8TC90 406 aaPredicted RBP14.45□□□□□ -0.1
SF3A3-201ENST00000373019 TSHZ2Q9NRE2 1034 aa14.38□□□□□ -0.11
SF3A3-201ENST00000373019 UNC13AQ9UPW8 1703 aa14.38□□□□□ -0.11
SF3A3-201ENST00000373019 MIER1Q8N108 512 aa14.34□□□□□ -0.11
SF3A3-201ENST00000373019 BICRAQ9NZM4 1560 aa14.33□□□□□ -0.12
SF3A3-201ENST00000373019 ZNF316A6NFI3 1004 aaPredicted RBP14.33□□□□□ -0.12
SF3A3-201ENST00000373019 SUPT16HQ9Y5B9 1047 aaKnown RBP14.32□□□□□ -0.12
SF3A3-201ENST00000373019 DNAJC5BQ9UF47 199 aa14.22□□□□□ -0.13
SF3A3-201ENST00000373019 CLSPNQ9HAW4 1339 aa14.19□□□□□ -0.14
SF3A3-201ENST00000373019 ERICH6Q7L0X2 663 aa14.16□□□□□ -0.14
SF3A3-201ENST00000373019 APLP2Q06481 763 aa14.13□□□□□ -0.15
SF3A3-201ENST00000373019 EHMT2Q96KQ7 1210 aa14.12□□□□□ -0.15
SF3A3-201ENST00000373019 EIF4G1Q04637 1599 aaKnown RBP14.09□□□□□ -0.15
SF3A3-201ENST00000373019 CECR2Q9BXF3 1484 aa14.04□□□□□ -0.16
SF3A3-201ENST00000373019 BAZ1AQ9NRL2 1556 aaPredicted RBP14.02□□□□□ -0.16
SF3A3-201ENST00000373019 CC2D2AQ9P2K1 1620 aa13.99□□□□□ -0.17
SF3A3-201ENST00000373019 RBM19Q9Y4C8 960 aaKnown RBP13.98□□□□□ -0.17
SF3A3-201ENST00000373019 MSH5O43196 834 aa13.96□□□□□ -0.17
SF3A3-201ENST00000373019 SMARCA4P51532 1647 aa13.92□□□□□ -0.18
SF3A3-201ENST00000373019 ANO8Q9HCE9 1232 aaPredicted RBP13.92□□□□□ -0.18
SF3A3-201ENST00000373019 SMARCA2P51531 1590 aa13.91□□□□□ -0.18
SF3A3-201ENST00000373019 MROH2BQ7Z745 1585 aa13.89□□□□□ -0.19
SF3A3-201ENST00000373019 BAZ1BQ9UIG0 1483 aaKnown RBP13.88□□□□□ -0.19
SF3A3-201ENST00000373019 WRNQ14191 1432 aaPredicted RBP eCLIP13.87□□□□□ -0.19
SF3A3-201ENST00000373019 ATAD2BQ9ULI0 1458 aa13.87□□□□□ -0.19
SF3A3-201ENST00000373019 BCANQ96GW7 911 aa13.87□□□□□ -0.19
SF3A3-201ENST00000373019 RSF1Q96T23 1441 aaPredicted RBP13.84□□□□□ -0.19
SF3A3-201ENST00000373019 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
SF3A3-201ENST00000373019 FKBP8Q14318 412 aa13.78□□□□□ -0.2
SF3A3-201ENST00000373019 DEKP35659 375 aaKnown RBP13.75□□□□□ -0.21
SF3A3-201ENST00000373019 FANCIQ9NVI1 1328 aa13.74□□□□□ -0.21
SF3A3-201ENST00000373019 KCNH8Q96L42 1107 aa13.74□□□□□ -0.21
SF3A3-201ENST00000373019 SALL2Q9Y467 1007 aaPredicted RBP13.74□□□□□ -0.21
SF3A3-201ENST00000373019 HMGXB3Q12766 1538 aa13.73□□□□□ -0.21
SF3A3-201ENST00000373019 WIZO95785 1651 aa13.72□□□□□ -0.21
SF3A3-201ENST00000373019 ITGAEP38570 1179 aa13.7□□□□□ -0.22
SF3A3-201ENST00000373019 MYT1LQ9UL68 1186 aa13.69□□□□□ -0.22
SF3A3-201ENST00000373019 PEG3Q9GZU2 1588 aa13.68□□□□□ -0.22
SF3A3-201ENST00000373019 CEP162Q5TB80 1403 aa13.67□□□□□ -0.22
SF3A3-201ENST00000373019 HNRNPUL2Q1KMD3 747 aaKnown RBP13.65□□□□□ -0.22
SF3A3-201ENST00000373019 UBE2Q2Q8WVN8 375 aa13.65□□□□□ -0.23
SF3A3-201ENST00000373019 CCDC136Q96JN2 1154 aa13.62□□□□□ -0.23
SF3A3-201ENST00000373019 TOP2AP11388 1531 aaKnown RBP13.62□□□□□ -0.23
SF3A3-201ENST00000373019 ERICH6BQ5W0A0 696 aa13.61□□□□□ -0.23
SF3A3-201ENST00000373019 ERCC6Q03468 1493 aa13.6□□□□□ -0.23
SF3A3-201ENST00000373019 CADPSQ9ULU8 1353 aa13.54□□□□□ -0.24
SF3A3-201ENST00000373019 NEFLP07196 543 aa13.54□□□□□ -0.24
SF3A3-201ENST00000373019 TNIKQ9UKE5 1360 aa13.54□□□□□ -0.24
SF3A3-201ENST00000373019 PDS5BQ9NTI5 1447 aa13.53□□□□□ -0.24
SF3A3-201ENST00000373019 DHX57Q6P158 1386 aaKnown RBP13.5□□□□□ -0.25
SF3A3-201ENST00000373019 CCDC88BA6NC98 1476 aa13.5□□□□□ -0.25
SF3A3-201ENST00000373019 IL27Q8NEV9 243 aa13.49□□□□□ -0.25
SF3A3-201ENST00000373019 NESP48681 1621 aa13.47□□□□□ -0.25
SF3A3-201ENST00000373019 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.46□□□□□ -0.26
SF3A3-201ENST00000373019 CDK11AQ9UQ88 783 aaPredicted RBP13.46□□□□□ -0.26
SF3A3-201ENST00000373019 NBR1Q14596 966 aa13.44□□□□□ -0.26
SF3A3-201ENST00000373019 LAMC3Q9Y6N6 1575 aa13.44□□□□□ -0.26
SF3A3-201ENST00000373019 SLC24A1O60721 1099 aa13.43□□□□□ -0.26
SF3A3-201ENST00000373019 TRIM52Q96A61 297 aa13.43□□□□□ -0.26
SF3A3-201ENST00000373019 ABCC8Q09428 1581 aa13.42□□□□□ -0.26
SF3A3-201ENST00000373019 PAK3O75914 559 aaPredicted RBP13.41□□□□□ -0.26
SF3A3-201ENST00000373019 RTN4Q9NQC3 1192 aaKnown RBP13.4□□□□□ -0.26
SF3A3-201ENST00000373019 NOP58Q9Y2X3 529 aaKnown RBP13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms