RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 C3orf80F5H4A9 247 aa11.52□□□□□ -0.57
VPS13A-201ENST00000355766 FANCAO15360 1455 aa11.51□□□□□ -0.57
VPS13A-201ENST00000355766 SMAPO00193 183 aa11.51□□□□□ -0.57
VPS13A-201ENST00000355766 LRCH3Q96II8 777 aa11.51□□□□□ -0.57
VPS13A-201ENST00000355766 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.51□□□□□ -0.57
VPS13A-201ENST00000355766 SPATA31D1Q6ZQQ2 1576 aa11.5□□□□□ -0.57
VPS13A-201ENST00000355766 ARID3CA6NKF2 412 aa11.5□□□□□ -0.57
VPS13A-201ENST00000355766 POGZQ7Z3K3 1410 aa11.5□□□□□ -0.57
VPS13A-201ENST00000355766 ZMYM4Q5VZL5 1548 aa11.5□□□□□ -0.57
VPS13A-201ENST00000355766 KCNV2Q8TDN2 545 aa11.49□□□□□ -0.57
VPS13A-201ENST00000355766 ARHGEF1Q92888 912 aaKnown RBP11.49□□□□□ -0.57
VPS13A-201ENST00000355766 FHOD3Q2V2M9 1422 aa11.49□□□□□ -0.57
VPS13A-201ENST00000355766 DENND4BO75064 1496 aaPredicted RBP11.49□□□□□ -0.57
VPS13A-201ENST00000355766 TTC37Q6PGP7 1564 aa11.49□□□□□ -0.57
VPS13A-201ENST00000355766 RICTORQ6R327 1708 aa11.49□□□□□ -0.57
VPS13A-201ENST00000355766 NYAP1Q6ZVC0 841 aa11.48□□□□□ -0.57
VPS13A-201ENST00000355766 TSR3Q9UJK0 312 aaKnown RBP11.48□□□□□ -0.57
VPS13A-201ENST00000355766 HPS5Q9UPZ3 1129 aa11.48□□□□□ -0.57
VPS13A-201ENST00000355766 AKNAQ7Z591 1439 aa11.48□□□□□ -0.57
VPS13A-201ENST00000355766 SIGLEC1Q9BZZ2 1709 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 RAPGEF6Q8TEU7 1601 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 EFCAB5A4FU69 1503 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 ZFYVE16Q7Z3T8 1539 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 PRXQ9BXM0 1461 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 A0A0G2JS52 829 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 ITGBL1O95965 494 aaPredicted RBP11.47□□□□□ -0.57
VPS13A-201ENST00000355766 TATDN2Q93075 761 aa11.47□□□□□ -0.57
VPS13A-201ENST00000355766 CFAP74Q9C0B2 1584 aa11.46□□□□□ -0.57
VPS13A-201ENST00000355766 MLLT3P42568 568 aaPredicted RBP11.46□□□□□ -0.57
VPS13A-201ENST00000355766 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.57
VPS13A-201ENST00000355766 PNMA3Q9UL41 463 aa11.46□□□□□ -0.57
VPS13A-201ENST00000355766 SAMD7Q7Z3H4 446 aa11.45□□□□□ -0.58
VPS13A-201ENST00000355766 SAMD9Q5K651 1589 aa11.45□□□□□ -0.58
VPS13A-201ENST00000355766 YEATS2Q9ULM3 1422 aa11.44□□□□□ -0.58
VPS13A-201ENST00000355766 NBPF26B4DH59 902 aa11.44□□□□□ -0.58
VPS13A-201ENST00000355766 RBM27Q9P2N5 1060 aaKnown RBP11.44□□□□□ -0.58
VPS13A-201ENST00000355766 NUP153P49790 1475 aaKnown RBP11.44□□□□□ -0.58
VPS13A-201ENST00000355766 FER1L4A9Z1Z3 1794 aa11.44□□□□□ -0.58
VPS13A-201ENST00000355766 PREX1Q8TCU6 1659 aa11.43□□□□□ -0.58
VPS13A-201ENST00000355766 NUDT18Q6ZVK8 323 aa11.43□□□□□ -0.58
VPS13A-201ENST00000355766 FAM9AQ8IZU1 332 aaPredicted RBP11.43□□□□□ -0.58
VPS13A-201ENST00000355766 MAGI2Q86UL8 1455 aa11.43□□□□□ -0.58
VPS13A-201ENST00000355766 ARHGEF12Q9NZN5 1544 aa11.42□□□□□ -0.58
VPS13A-201ENST00000355766 TTC13Q8NBP0 860 aa11.42□□□□□ -0.58
VPS13A-201ENST00000355766 PPP4CP60510 307 aa11.41□□□□□ -0.58
VPS13A-201ENST00000355766 HECW1Q76N89 1606 aa11.4□□□□□ -0.58
VPS13A-201ENST00000355766 RGS20O76081 388 aa11.4□□□□□ -0.58
VPS13A-201ENST00000355766 PADI6Q6TGC4 694 aa11.4□□□□□ -0.58
VPS13A-201ENST00000355766 P3H3Q8IVL6 736 aa11.4□□□□□ -0.58
VPS13A-201ENST00000355766 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.4□□□□□ -0.59
VPS13A-201ENST00000355766 KCNC4Q03721 635 aa11.39□□□□□ -0.59
VPS13A-201ENST00000355766 STRCQ7RTU9 1775 aa11.38□□□□□ -0.59
VPS13A-201ENST00000355766 C9orf84Q5VXU9 1444 aa11.37□□□□□ -0.59
VPS13A-201ENST00000355766 UHRF1BP1Q6BDS2 1440 aa11.37□□□□□ -0.59
VPS13A-201ENST00000355766 MLECQ14165 292 aa11.37□□□□□ -0.59
VPS13A-201ENST00000355766 IQSEC2Q5JU85 1478 aa11.36□□□□□ -0.59
VPS13A-201ENST00000355766 PTPRTO14522 1441 aa11.35□□□□□ -0.59
VPS13A-201ENST00000355766 PLCB2Q00722 1185 aa11.35□□□□□ -0.59
VPS13A-201ENST00000355766 ATP10AO60312 1499 aa11.35□□□□□ -0.59
VPS13A-201ENST00000355766 LTBP4Q8N2S1 1624 aa11.35□□□□□ -0.59
VPS13A-201ENST00000355766 HDGFP51858 240 aaKnown RBP11.33□□□□□ -0.6
VPS13A-201ENST00000355766 SCAPERQ9BY12 1400 aa11.33□□□□□ -0.6
VPS13A-201ENST00000355766 PLEKHD1A6NEE1 506 aa11.32□□□□□ -0.6
VPS13A-201ENST00000355766 RNF40O75150 1001 aa11.32□□□□□ -0.6
VPS13A-201ENST00000355766 PTGDRQ13258 359 aa11.32□□□□□ -0.6
VPS13A-201ENST00000355766 EYA1Q99502 592 aa11.32□□□□□ -0.6
VPS13A-201ENST00000355766 SEMA3EO15041 775 aa11.31□□□□□ -0.6
VPS13A-201ENST00000355766 CEBPAP49715 358 aaPredicted RBP11.31□□□□□ -0.6
VPS13A-201ENST00000355766 TJAP1Q5JTD0 557 aa11.31□□□□□ -0.6
VPS13A-201ENST00000355766 SWT1Q5T5J6 900 aaKnown RBP11.31□□□□□ -0.6
VPS13A-201ENST00000355766 PLCH2O75038 1416 aa11.31□□□□□ -0.6
VPS13A-201ENST00000355766 EEA1Q15075 1411 aa11.29□□□□□ -0.6
VPS13A-201ENST00000355766 KDM5CP41229 1560 aa11.28□□□□□ -0.6
VPS13A-201ENST00000355766 REREQ9P2R6 1566 aa11.28□□□□□ -0.6
VPS13A-201ENST00000355766 NCOA1Q15788 1441 aa11.28□□□□□ -0.6
VPS13A-201ENST00000355766 ZNF518AQ6AHZ1 1483 aa11.28□□□□□ -0.6
VPS13A-201ENST00000355766 NUTM2FA1L443 756 aa11.28□□□□□ -0.6
VPS13A-201ENST00000355766 APLP1P51693 650 aa11.28□□□□□ -0.6
VPS13A-201ENST00000355766 CDK13Q14004 1512 aaKnown RBP11.28□□□□□ -0.6
VPS13A-201ENST00000355766 MTRQ99707 1265 aa11.27□□□□□ -0.61
VPS13A-201ENST00000355766 DIP2CQ9Y2E4 1556 aa11.27□□□□□ -0.61
VPS13A-201ENST00000355766 SLF2Q8IX21 1173 aa11.26□□□□□ -0.61
VPS13A-201ENST00000355766 C3P01024 1663 aa11.26□□□□□ -0.61
VPS13A-201ENST00000355766 IRX2Q9BZI1 471 aaPredicted RBP11.25□□□□□ -0.61
VPS13A-201ENST00000355766 IL21Q9HBE4 155 aa11.25□□□□□ -0.61
VPS13A-201ENST00000355766 ADGRG1Q9Y653 693 aa11.24□□□□□ -0.61
VPS13A-201ENST00000355766 TRAPPC8Q9Y2L5 1435 aa11.24□□□□□ -0.61
VPS13A-201ENST00000355766 AGLP35573 1532 aa11.24□□□□□ -0.61
VPS13A-201ENST00000355766 ABCA6Q8N139 1617 aa11.24□□□□□ -0.61
VPS13A-201ENST00000355766 MYO5CQ9NQX4 1742 aa11.23□□□□□ -0.61
VPS13A-201ENST00000355766 FAM161AQ3B820 660 aa11.23□□□□□ -0.61
VPS13A-201ENST00000355766 ZNF516Q92618 1163 aa11.23□□□□□ -0.61
VPS13A-201ENST00000355766 CAMSAP1Q5T5Y3 1602 aa11.21□□□□□ -0.61
VPS13A-201ENST00000355766 FCHSD2O94868 740 aa11.21□□□□□ -0.61
VPS13A-201ENST00000355766 EFCAB2Q5VUJ9 269 aa11.21□□□□□ -0.61
VPS13A-201ENST00000355766 RBM46Q8TBY0 533 aaKnown RBP11.21□□□□□ -0.61
VPS13A-201ENST00000355766 NECTIN2Q92692 538 aa11.21□□□□□ -0.61
VPS13A-201ENST00000355766 KIF14Q15058 1648 aa11.2□□□□□ -0.62
VPS13A-201ENST00000355766 ARHGAP5Q13017 1502 aa11.2□□□□□ -0.62
VPS13A-201ENST00000355766 MLH3Q9UHC1 1453 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 145 ms