RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 AEBP2Q6ZN18 517 aaPredicted RBP28.68■■■□□ 2.18
VPS13A-201ENST00000355766 CHIC1Q5VXU3 224 aa27.36■■□□□ 1.97
VPS13A-201ENST00000355766 SENP3Q9H4L4 574 aaPredicted RBP24.38■■□□□ 1.49
VPS13A-201ENST00000355766 PHF23Q9BUL5 403 aaPredicted RBP24.12■■□□□ 1.45
VPS13A-201ENST00000355766 FOXD1Q16676 465 aa22.73■■□□□ 1.23
VPS13A-201ENST00000355766 PLPPR3Q6T4P5 718 aa21.92■■□□□ 1.1
VPS13A-201ENST00000355766 PPP6R1Q9UPN7 881 aa21.42■■□□□ 1.02
VPS13A-201ENST00000355766 ADRA2BP18089 450 aa21.36■■□□□ 1.01
VPS13A-201ENST00000355766 PIAS4Q8N2W9 510 aaPredicted RBP21.27■■□□□ 1
VPS13A-201ENST00000355766 MSH5O43196 834 aa21.17■□□□□ 0.98
VPS13A-201ENST00000355766 POTEDQ86YR6 584 aa20.42■□□□□ 0.86
VPS13A-201ENST00000355766 MAPK8IP2Q13387 824 aaPredicted RBP19.58■□□□□ 0.72
VPS13A-201ENST00000355766 SCAF1Q9H7N4 1312 aaKnown RBP19.48■□□□□ 0.71
VPS13A-201ENST00000355766 DMRT2Q9Y5R5 561 aa19.38■□□□□ 0.69
VPS13A-201ENST00000355766 PPP4R3CPQ6ZMV5 832 aa19.25■□□□□ 0.67
VPS13A-201ENST00000355766 CNKSR2Q8WXI2 1034 aa18.84■□□□□ 0.61
VPS13A-201ENST00000355766 HOXD11P31277 338 aaPredicted RBP18.73■□□□□ 0.59
VPS13A-201ENST00000355766 RNF216Q9NWF9 866 aaPredicted RBP18.63■□□□□ 0.57
VPS13A-201ENST00000355766 DCAF8L1A6NGE4 600 aa18.58■□□□□ 0.56
VPS13A-201ENST00000355766 NCBP3Q53F19 620 aaKnown RBP18.54■□□□□ 0.56
VPS13A-201ENST00000355766 NPM3O75607 178 aaKnown RBP18.3■□□□□ 0.52
VPS13A-201ENST00000355766 KCNA4P22459 653 aa18.11■□□□□ 0.49
VPS13A-201ENST00000355766 RNF39Q9H2S5 420 aa18.11■□□□□ 0.49
VPS13A-201ENST00000355766 CACNB1Q02641 598 aaPredicted RBP18.08■□□□□ 0.48
VPS13A-201ENST00000355766 DNAJC5BQ9UF47 199 aa18.02■□□□□ 0.48
VPS13A-201ENST00000355766 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.85■□□□□ 0.45
VPS13A-201ENST00000355766 C1QBPQ07021 282 aaKnown RBP17.84■□□□□ 0.45
VPS13A-201ENST00000355766 U3KPZ7 1027 aaPredicted RBP17.51■□□□□ 0.39
VPS13A-201ENST00000355766 SLC4A2P04920 1241 aa17.45■□□□□ 0.38
VPS13A-201ENST00000355766 SPINK5Q9NQ38 1064 aaPredicted RBP17.21■□□□□ 0.35
VPS13A-201ENST00000355766 CAPN15O75808 1086 aa17.15■□□□□ 0.34
VPS13A-201ENST00000355766 NISCHQ9Y2I1 1504 aa17.15■□□□□ 0.34
VPS13A-201ENST00000355766 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
VPS13A-201ENST00000355766 DSG3P32926 999 aa17.03■□□□□ 0.32
VPS13A-201ENST00000355766 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.32
VPS13A-201ENST00000355766 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
VPS13A-201ENST00000355766 APLP2Q06481 763 aa16.97■□□□□ 0.31
VPS13A-201ENST00000355766 SAMD1Q6SPF0 538 aaPredicted RBP16.94■□□□□ 0.3
VPS13A-201ENST00000355766 TRHP20396 242 aaPredicted RBP16.92■□□□□ 0.3
VPS13A-201ENST00000355766 MYCNP04198 464 aaPredicted RBP16.89■□□□□ 0.29
VPS13A-201ENST00000355766 ZNF219Q9P2Y4 722 aaPredicted RBP16.87■□□□□ 0.29
VPS13A-201ENST00000355766 FOXD4L1Q9NU39 408 aa16.83■□□□□ 0.28
VPS13A-201ENST00000355766 ABCB7O75027 752 aa16.78■□□□□ 0.28
VPS13A-201ENST00000355766 ZBTB22O15209 634 aa16.67■□□□□ 0.26
VPS13A-201ENST00000355766 ATF5Q9Y2D1 282 aaPredicted RBP16.54■□□□□ 0.24
VPS13A-201ENST00000355766 POLA2Q14181 598 aa16.51■□□□□ 0.23
VPS13A-201ENST00000355766 ATXN8OSP0DMR3 200 aa16.28■□□□□ 0.2
VPS13A-201ENST00000355766 RBM42Q9BTD8 480 aaKnown RBP16.19■□□□□ 0.18
VPS13A-201ENST00000355766 ZBTB12Q9Y330 459 aaPredicted RBP16.14■□□□□ 0.17
VPS13A-201ENST00000355766 CSRNP3Q8WYN3 585 aa16.05■□□□□ 0.16
VPS13A-201ENST00000355766 POTEHQ6S545 545 aa16.02■□□□□ 0.16
VPS13A-201ENST00000355766 OSCARQ8IYS5 282 aa15.98■□□□□ 0.15
VPS13A-201ENST00000355766 ABCC9O60706 1549 aa15.93■□□□□ 0.14
VPS13A-201ENST00000355766 EHMT2Q96KQ7 1210 aa15.92■□□□□ 0.14
VPS13A-201ENST00000355766 AKT1S1Q96B36 256 aa15.88■□□□□ 0.13
VPS13A-201ENST00000355766 FBLN2P98095 1184 aa15.84■□□□□ 0.13
VPS13A-201ENST00000355766 CHRDL2Q6WN34 429 aa15.8■□□□□ 0.12
VPS13A-201ENST00000355766 MKRN4PQ13434 485 aaPredicted RBP15.79■□□□□ 0.12
VPS13A-201ENST00000355766 REM2Q8IYK8 340 aaPredicted RBP15.75■□□□□ 0.11
VPS13A-201ENST00000355766 SPDYE2BA6NHP3 402 aa15.68■□□□□ 0.1
VPS13A-201ENST00000355766 SPDYE6P0CI01 402 aa15.68■□□□□ 0.1
VPS13A-201ENST00000355766 SPDYE2Q495Y8 402 aa15.68■□□□□ 0.1
VPS13A-201ENST00000355766 CCDC180Q9P1Z9 1646 aa15.59■□□□□ 0.09
VPS13A-201ENST00000355766 PITPNM1O00562 1244 aa15.58■□□□□ 0.08
VPS13A-201ENST00000355766 ZNF692Q9BU19 519 aaPredicted RBP15.53■□□□□ 0.08
VPS13A-201ENST00000355766 SSUH2Q9Y2M2 353 aa15.5■□□□□ 0.07
VPS13A-201ENST00000355766 PIP4P2Q8N4L2 257 aa15.48■□□□□ 0.07
VPS13A-201ENST00000355766 FXR2P51116 673 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS13A-201ENST00000355766 SPDYE1Q8NFV5 336 aaPredicted RBP15.37■□□□□ 0.05
VPS13A-201ENST00000355766 CLEC11AQ9Y240 323 aa15.34■□□□□ 0.05
VPS13A-201ENST00000355766 PABPN1Q86U42 306 aaKnown RBP eCLIP15.32■□□□□ 0.04
VPS13A-201ENST00000355766 PRKAR2AP13861 404 aaKnown RBP15.17■□□□□ 0.02
VPS13A-201ENST00000355766 HAX1O00165 279 aa15.14■□□□□ 0.01
VPS13A-201ENST00000355766 PRR29P0C7W0 189 aa15.12■□□□□ 0.01
VPS13A-201ENST00000355766 SPDYE4A6NLX3 237 aa15.11■□□□□ 0.01
VPS13A-201ENST00000355766 SP7Q8TDD2 431 aaPredicted RBP15.1■□□□□ 0.01
VPS13A-201ENST00000355766 CHADLQ6NUI6 762 aa15.06■□□□□ 0
VPS13A-201ENST00000355766 EVX2Q03828 476 aa15.01□□□□□ -0.01
VPS13A-201ENST00000355766 RB1CC1Q8TDY2 1594 aa15.01□□□□□ -0.01
VPS13A-201ENST00000355766 C19orf67A6NJJ6 358 aa14.91□□□□□ -0.02
VPS13A-201ENST00000355766 STAG3Q9UJ98 1225 aa14.9□□□□□ -0.02
VPS13A-201ENST00000355766 FARP1Q9Y4F1 1045 aaPredicted RBP14.84□□□□□ -0.03
VPS13A-201ENST00000355766 NACADO15069 1562 aa14.81□□□□□ -0.04
VPS13A-201ENST00000355766 CREBZFQ9NS37 354 aa14.8□□□□□ -0.04
VPS13A-201ENST00000355766 PROM2Q8N271 834 aa14.76□□□□□ -0.05
VPS13A-201ENST00000355766 CD44P16070 742 aaKnown RBP14.7□□□□□ -0.06
VPS13A-201ENST00000355766 GABBR2O75899 941 aa14.65□□□□□ -0.06
VPS13A-201ENST00000355766 UNC13AQ9UPW8 1703 aa14.61□□□□□ -0.07
VPS13A-201ENST00000355766 BICRAQ9NZM4 1560 aa14.6□□□□□ -0.07
VPS13A-201ENST00000355766 MNX1P50219 401 aaPredicted RBP14.56□□□□□ -0.08
VPS13A-201ENST00000355766 FKBP8Q14318 412 aa14.53□□□□□ -0.08
VPS13A-201ENST00000355766 ZRANB1Q9UGI0 708 aa14.52□□□□□ -0.09
VPS13A-201ENST00000355766 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
VPS13A-201ENST00000355766 DCAF8L2P0C7V8 631 aa14.5□□□□□ -0.09
VPS13A-201ENST00000355766 NPM1P06748 294 aaKnown RBP eCLIP14.49□□□□□ -0.09
VPS13A-201ENST00000355766 ZNF579Q8NAF0 562 aaKnown RBP14.47□□□□□ -0.09
VPS13A-201ENST00000355766 CLCN6P51797 869 aa14.43□□□□□ -0.1
VPS13A-201ENST00000355766 SHROOM4Q9ULL8 1493 aa14.43□□□□□ -0.1
VPS13A-201ENST00000355766 CECR2Q9BXF3 1484 aa14.4□□□□□ -0.1
VPS13A-201ENST00000355766 PAK3O75914 559 aaPredicted RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms