RNA–Protein interactions for RNA: YMR067C

UBX4, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX4, Length 1,251 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX4	YMR067C	YGL235W	P53071	178 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	YNR064C	P53750	290 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	NCE101	Q02820	53 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	GRE1	Q08969	168 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	DGK1	Q12382	290 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	YMR030W-A	Q3E760	96 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	MHF1	Q3E835	90 aa		0.33	□□□□□ -2.36
UBX4	YMR067C	RPL39	P04650	51 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	ROX3	P25046	220 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	RFA3	P26755	122 aa	Known RBP	0.32	□□□□□ -2.36
UBX4	YMR067C	YKT6	P36015	200 aa	Known RBP	0.32	□□□□□ -2.36
UBX4	YMR067C	FMP23	P38231	175 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	NSG1	P38837	291 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	YJR111C	P47148	283 aa	Known RBP	0.32	□□□□□ -2.36
UBX4	YMR067C	CCC1	P47818	322 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	GEP7	P53171	287 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	YNL140C	P53910	189 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	NHP10	Q03435	203 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	TMA23	Q03525	211 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	ELP6	Q04868	273 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	FIT3	Q08907	204 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	RUD3	Q12234	484 aa	Known RBP	0.32	□□□□□ -2.36
UBX4	YMR067C	YCL012C	Q8J0M4	134 aa		0.32	□□□□□ -2.36
UBX4	YMR067C	QCR6	P00127	147 aa		0.31	□□□□□ -2.36
UBX4	YMR067C	MRS1	P07266	363 aa		0.31	□□□□□ -2.36
UBX4	YMR067C	RPB4	P20433	221 aa	Predicted RBP	0.31	□□□□□ -2.36
UBX4	YMR067C	PTC1	P35182	281 aa		0.31	□□□□□ -2.36
UBX4	YMR067C	TRS20	P38334	175 aa		0.31	□□□□□ -2.36
UBX4	YMR067C	IRC19	Q07843	230 aa		0.31	□□□□□ -2.36
UBX4	YMR067C	BRX1	Q08235	291 aa	Known RBP	0.31	□□□□□ -2.36
UBX4	YMR067C	PRM3	Q08931	133 aa		0.31	□□□□□ -2.36
UBX4	YMR067C	KIN28	P06242	306 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	NMT1	P14743	455 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	HSP30	P25619	332 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	RPS1A	P33442	255 aa	Known RBP	0.3	□□□□□ -2.36
UBX4	YMR067C	YKR070W	P36151	352 aa	Known RBP	0.3	□□□□□ -2.36
UBX4	YMR067C	SRL3	P36167	246 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	ECM31	P38122	312 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	MPC2	P38857	129 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	FMP32	P43557	207 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YFL019C	P43576	117 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	VPS55	P47111	140 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	XPT1	P47165	209 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	PAC10	P48363	199 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	EFM5	P53200	248 aa	Known RBP	0.3	□□□□□ -2.36
UBX4	YMR067C	RCF2	P53721	224 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YDC1	Q02896	317 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YDR102C	Q03864	110 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YHP1	Q04116	353 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	HPT1	Q04178	221 aa	Known RBP	0.3	□□□□□ -2.36
UBX4	YMR067C	YDR278C	Q05612	105 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	HOR7	Q05827	59 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YOR214C	Q12282	236 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YOR343C	Q12484	108 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	YMR105W-A	Q8TGS8	64 aa		0.3	□□□□□ -2.36
UBX4	YMR067C	DDP1	Q99321	188 aa	Known RBP	0.3	□□□□□ -2.36
UBX4	YMR067C	ANB1	P19211	157 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	RPC19	P28000	142 aa	Known RBP	0.29	□□□□□ -2.36
UBX4	YMR067C	HYM1	P32464	399 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	TIM12	P32830	109 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	YNL200C	P40165	246 aa	Known RBP	0.29	□□□□□ -2.36
UBX4	YMR067C	YJL218W	P40892	196 aa	Known RBP	0.29	□□□□□ -2.36
UBX4	YMR067C	NSE4	P43124	402 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	COX12	Q01519	83 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	GRX5	Q02784	150 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	YDR476C	Q03362	224 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	CSN9	Q03981	162 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	GPI17	Q04080	534 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	KEI1	Q06346	221 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	DAS2	Q12084	232 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	FCY1	Q12178	158 aa		0.29	□□□□□ -2.36
UBX4	YMR067C	COX5B	P00425	151 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	CMD1	P06787	147 aa	Known RBP	0.28	□□□□□ -2.36
UBX4	YMR067C	RPL30	P14120	105 aa	Known RBP	0.28	□□□□□ -2.36
UBX4	YMR067C	BUB2	P26448	306 aa	Predicted RBP	0.28	□□□□□ -2.36
UBX4	YMR067C	NTG1	P31378	399 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	CAF4	P36130	643 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	RGI1	P40043	161 aa	Predicted RBP	0.28	□□□□□ -2.36
UBX4	YMR067C	YGR017W	P53210	297 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	YNL184C	P53876	108 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	NRK1	P53915	240 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	RPL22B	P56628	122 aa	Known RBP	0.28	□□□□□ -2.36
UBX4	YMR067C	YPL067C	Q02754	198 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	UPS1	Q05776	175 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	ATG38	Q05789	226 aa	Known RBP	0.28	□□□□□ -2.36
UBX4	YMR067C	YPR127W	Q06494	345 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	YET3	Q07451	203 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	RFU1	Q08003	200 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	YLR412C-A	Q3E742	68 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	MHF2	Q3E829	80 aa		0.28	□□□□□ -2.36
UBX4	YMR067C	HTB1	P02293	131 aa	Known RBP	0.27	□□□□□ -2.37
UBX4	YMR067C	HTB2	P02294	131 aa		0.27	□□□□□ -2.37
UBX4	YMR067C	CBF1	P17106	351 aa		0.27	□□□□□ -2.37
UBX4	YMR067C	PHO13	P19881	312 aa		0.27	□□□□□ -2.37
UBX4	YMR067C	RPS1B	P23248	255 aa	Known RBP	0.27	□□□□□ -2.37
UBX4	YMR067C	LHP1	P33399	275 aa	Known RBP	0.27	□□□□□ -2.37
UBX4	YMR067C	CPR5	P35176	225 aa		0.27	□□□□□ -2.37
UBX4	YMR067C	SRP102	P36057	244 aa	Predicted RBP	0.27	□□□□□ -2.37
UBX4	YMR067C	YER137C	P40083	148 aa	Known RBP	0.27	□□□□□ -2.37
UBX4	YMR067C	RFC2	P40348	353 aa		0.27	□□□□□ -2.37

Retrieved 100 of 5,963 RNA–protein pairs in 89.7 ms