RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	CDC25	P04821	1589 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	ATP5	P09457	212 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	RPL30	P14120	105 aa	Known RBP	1.17	□□□□□ -2.22
NCL1	YBL024W	PEX34	P25584	144 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	BUB2	P26448	306 aa	Predicted RBP	1.17	□□□□□ -2.22
NCL1	YBL024W	MPM1	P40364	252 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	FLX1	P40464	311 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	APQ12	P40532	138 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	NQM1	P53228	333 aa	Predicted RBP	1.17	□□□□□ -2.22
NCL1	YBL024W	RRP17	Q04031	235 aa	Predicted RBP	1.17	□□□□□ -2.22
NCL1	YBL024W	ATG41	Q12048	136 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	BUD4	P47136	1447 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	TRM3	Q07527	1436 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	UBC8	P28263	218 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	PTC1	P35182	281 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	YEL073C	P39974	107 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	DLS1	P40366	167 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	ALB1	P47019	175 aa	Predicted RBP	1.17	□□□□□ -2.22
NCL1	YBL024W	YHP1	Q04116	353 aa		1.17	□□□□□ -2.22
NCL1	YBL024W	BEM2	P39960	2167 aa	Known RBP	1.17	□□□□□ -2.22
NCL1	YBL024W	RPO31	P04051	1460 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	FPR1	P20081	114 aa	Known RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	RPB7	P34087	171 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	HPA3	P39979	161 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	FIP1	P45976	327 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	YAE1	P47118	141 aa	Predicted RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	UPS3	Q04006	179 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	YNL146C-A	Q3E7Z1	64 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	RPA190	P10964	1664 aa	Known RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	YLR422W	Q06409	1932 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	YCF1	P39109	1515 aa	Known RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	TCB3	Q03640	1545 aa	Known RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	PBI2	P0CT04	75 aa	Known RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	YEL008W	P40001	126 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	HYR1	P40581	163 aa	Known RBP	1.16	□□□□□ -2.22
NCL1	YBL024W	CCC1	P47818	322 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	YDC1	Q02896	317 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	YMR252C	Q04814	134 aa		1.16	□□□□□ -2.22
NCL1	YBL024W	GEA2	P39993	1459 aa	Known RBP	1.15	□□□□□ -2.22
NCL1	YBL024W	HIR3	P47171	1648 aa		1.15	□□□□□ -2.22
NCL1	YBL024W	YOR093C	Q12275	1648 aa		1.15	□□□□□ -2.22
NCL1	YBL024W	HSL1	P34244	1518 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	PET54	P10834	293 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	STF2	P16965	84 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	1.15	□□□□□ -2.23	not detected
NCL1	YBL024W	PAC10	P48363	199 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	HHT1	P61830	136 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	YDR102C	Q03864	110 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	ELP6	Q04868	273 aa		1.15	□□□□□ -2.23
NCL1	YBL024W	HTD2	P38790	280 aa	Known RBP	1.14	□□□□□ -2.23
NCL1	YBL024W	CCS1	P40202	249 aa	Known RBP	1.14	□□□□□ -2.23
NCL1	YBL024W	YGL193C	P53097	103 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	CWC27	Q02770	301 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	GRX5	Q02784	150 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	RCE1	Q03530	315 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	LIP1	Q03579	150 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	CYR1	P08678	2026 aa	Known RBP	1.14	□□□□□ -2.23
NCL1	YBL024W	DUR1,2	P32528	1835 aa	Known RBP	1.14	□□□□□ -2.23
NCL1	YBL024W	MAK31	P23059	88 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	SRP102	P36057	244 aa	Predicted RBP	1.14	□□□□□ -2.23
NCL1	YBL024W	YEL067C	P39978	195 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	MOG1	P47123	218 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	UBC7	Q02159	165 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	SIN3	P22579	1536 aa		1.14	□□□□□ -2.23
NCL1	YBL024W	THO2	P53552	1597 aa	Known RBP	1.13	□□□□□ -2.23
NCL1	YBL024W	YHL042W	P38729	150 aa		1.13	□□□□□ -2.23
NCL1	YBL024W	YNR064C	P53750	290 aa		1.13	□□□□□ -2.23
NCL1	YBL024W	YPR114W	Q06107	315 aa		1.13	□□□□□ -2.23
NCL1	YBL024W	SEN2	P16658	377 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	YPT31	P38555	223 aa	Known RBP	1.12	□□□□□ -2.23
NCL1	YBL024W	IPI1	P38803	334 aa	Predicted RBP	1.12	□□□□□ -2.23
NCL1	YBL024W	YER181C	P40097	107 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	YJL218W	P40892	196 aa	Known RBP	1.12	□□□□□ -2.23
NCL1	YBL024W	YDL241W	Q07738	123 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	ATG10	Q07879	167 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	DNF2	Q12675	1612 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	INO4	P13902	151 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	MRS4	P23500	304 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	YCL042W	P25572	119 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	SPT14	P32363	452 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	YBL010C	P32788	280 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	ETR1	P38071	380 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	MOB1	P40484	314 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	YFL065C	P43539	102 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	LSM1	P47017	172 aa	Known RBP	1.12	□□□□□ -2.23
NCL1	YBL024W	MZM1	Q03429	123 aa	Predicted RBP	1.12	□□□□□ -2.23
NCL1	YBL024W	YDR391C	Q04170	232 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	HRD1	Q08109	551 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	YMR030W-A	Q3E760	96 aa		1.12	□□□□□ -2.23
NCL1	YBL024W	ESC1	Q03661	1658 aa	Known RBP	1.11	□□□□□ -2.23
NCL1	YBL024W	AQY2	P0CD90	149 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	PHO13	P19881	312 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	YGR269W	P40326	108 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	YJR015W	P47090	510 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	YML079W	Q03629	201 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	PKR1	Q03880	122 aa	Known RBP	1.11	□□□□□ -2.23
NCL1	YBL024W	UIP4	Q08926	304 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	TAR1	Q8TGM6	124 aa		1.11	□□□□□ -2.23
NCL1	YBL024W	PDR15	Q04182	1529 aa	Known RBP	1.11	□□□□□ -2.23
NCL1	YBL024W	SSK2	P53599	1579 aa		1.11	□□□□□ -2.23

Retrieved 100 of 5,963 RNA–protein pairs in 21.3 ms