RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	FIT1	Q04433	528 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	YMR252C	Q04814	134 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	HEM25	Q07534	307 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	YPL225W	Q08971	146 aa	Known RBP	3.03	□□□□□ -1.92
SSL1	YLR005W	FCY1	Q12178	158 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	JID1	Q12350	301 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	TRM10	Q12400	293 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	TFC7	Q12415	435 aa		3.03	□□□□□ -1.92
SSL1	YLR005W	TDH1	P00360	332 aa	Known RBP	3.02	□□□□□ -1.93
SSL1	YLR005W	PET54	P10834	293 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	LSB5	P25369	354 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	ARO4	P32449	370 aa	Known RBP	3.02	□□□□□ -1.93
SSL1	YLR005W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	not detected
SSL1	YLR005W	UTP30	P36144	274 aa	Known RBP	3.02	□□□□□ -1.93
SSL1	YLR005W	RFC2	P40348	353 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	SYS1	P41544	203 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	BNA6	P43619	295 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	GWT1	P47026	490 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	SOL1	P50278	321 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	YNL234W	P53857	426 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	GRX5	Q02784	150 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	YMR130W	Q04223	302 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	LPP1	Q04396	274 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	YDR286C	Q05530	114 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	YDL242W	Q07746	117 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	SWT1	Q12104	458 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	MED11	Q99278	115 aa		3.02	□□□□□ -1.93
SSL1	YLR005W	FUS3	P16892	353 aa	Known RBP	3.01	□□□□□ -1.93
SSL1	YLR005W	IFM1	P25038	676 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	PET18	P25362	215 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	OCH1	P31755	480 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	ECM4	P36156	370 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	SWD3	P38123	315 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	IKI1	P38874	309 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	ECM27	P47144	725 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	ILM1	P47155	203 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	BXI1	P48558	297 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	DIE2	P50076	525 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	RPL9B	P51401	191 aa	Known RBP	3.01	□□□□□ -1.93
SSL1	YLR005W	TOS8	P53147	276 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	ACT1	P60010	375 aa	Known RBP	3.01	□□□□□ -1.93
SSL1	YLR005W	YHP1	Q04116	353 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	DPB4	Q04603	196 aa	Known RBP	3.01	□□□□□ -1.93
SSL1	YLR005W	YOL029C	Q08187	201 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	ERG27	Q12452	347 aa	Known RBP	3.01	□□□□□ -1.93
SSL1	YLR005W	YLR099W-A	Q3E798	87 aa		3.01	□□□□□ -1.93
SSL1	YLR005W	GCN4	P03069	281 aa		3	□□□□□ -1.93
SSL1	YLR005W	ERG24	P32462	438 aa	Known RBP	3	□□□□□ -1.93
SSL1	YLR005W	SEC66	P33754	206 aa		3	□□□□□ -1.93
SSL1	YLR005W	YUH1	P35127	236 aa		3	□□□□□ -1.93
SSL1	YLR005W	YBR137W	P38276	179 aa		3	□□□□□ -1.93
SSL1	YLR005W	FCY21	P40039	528 aa		3	□□□□□ -1.93
SSL1	YLR005W	YAE1	P47118	141 aa	Predicted RBP	3	□□□□□ -1.93
SSL1	YLR005W	RCF1	Q03713	159 aa		3	□□□□□ -1.93
SSL1	YLR005W	ASR1	Q06834	288 aa		3	□□□□□ -1.93
SSL1	YLR005W	YNG1	Q08465	219 aa		3	□□□□□ -1.93
SSL1	YLR005W	YBR126W-A	Q8TGU7	68 aa		3	□□□□□ -1.93
SSL1	YLR005W	RPL9A	P05738	191 aa	Known RBP	3	□□□□□ -1.93
SSL1	YLR005W	CHO1	P08456	276 aa		3	□□□□□ -1.93
SSL1	YLR005W	CKA1	P15790	372 aa		3	□□□□□ -1.93
SSL1	YLR005W	AUA1	P32450	94 aa		3	□□□□□ -1.93
SSL1	YLR005W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
SSL1	YLR005W	MPC2	P38857	129 aa		3	□□□□□ -1.93
SSL1	YLR005W	YNL194C	P40169	301 aa		3	□□□□□ -1.93
SSL1	YLR005W	YJR012C	P47087	207 aa		3	□□□□□ -1.93
SSL1	YLR005W	GPI14	P47088	403 aa	Known RBP	3	□□□□□ -1.93
SSL1	YLR005W	DOC1	P53068	250 aa		3	□□□□□ -1.93
SSL1	YLR005W	TDA1	Q03533	586 aa		3	□□□□□ -1.93
SSL1	YLR005W	GRX3	Q03835	250 aa		3	□□□□□ -1.93
SSL1	YLR005W	TSA2	Q04120	196 aa		3	□□□□□ -1.93
SSL1	YLR005W	GRH1	Q04410	372 aa	Known RBP	3	□□□□□ -1.93
SSL1	YLR005W	NMA1	Q06178	401 aa	Known RBP	3	□□□□□ -1.93
SSL1	YLR005W	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	3	□□□□□ -1.93	not detected
SSL1	YLR005W	YOR192C-C	Q3E736	78 aa		3	□□□□□ -1.93
SSL1	YLR005W	YBR255C-A	Q3E776	120 aa		3	□□□□□ -1.93
SSL1	YLR005W	YOS1	Q3E834	85 aa		3	□□□□□ -1.93
SSL1	YLR005W	YEL009C-A	A0A023PZF2	135 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	STF2	P16965	84 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	YMR31	P19955	123 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	BUD23	P25627	275 aa	Predicted RBP	2.99	□□□□□ -1.93
SSL1	YLR005W	ERV1	P27882	189 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	VMA5	P31412	392 aa	Known RBP	2.99	□□□□□ -1.93
SSL1	YLR005W	PDC2	P32896	925 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	VAM7	P32912	316 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	RIB7	P33312	244 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	GEP4	P38812	185 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	SSO2	P39926	295 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	COX15	P40086	486 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	PCL7	P40186	285 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	ALG9	P53868	555 aa	Known RBP	2.99	□□□□□ -1.93
SSL1	YLR005W	SCW10	Q04951	389 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	MSC3	Q05812	728 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	MCH1	Q07376	486 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	NDE2	Q07500	545 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	YOR292C	Q08743	309 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	ATX2	Q12067	313 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	RBD2	Q12270	262 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	YLR365W	Q7LIF2	110 aa		2.99	□□□□□ -1.93
SSL1	YLR005W	YLL053C	P0CD98	152 aa		2.98	□□□□□ -1.93
SSL1	YLR005W	URA6	P15700	204 aa		2.98	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 43.8 ms